mRNA_P-wetherbeei_contig58157.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58157.1.1
Unique NamemRNA_P-wetherbeei_contig58157.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58157.1.1 vs. uniprot
Match: A0A0S8EQN7_9GAMM (PMT_2 domain-containing protein n=1 Tax=Thiotrichales bacterium SG8_50 TaxID=1703416 RepID=A0A0S8EQN7_9GAMM)

HSP 1 Score: 83.2 bits (204), Expect = 1.340e-15
Identity = 65/152 (42.76%), Postives = 81/152 (53.29%), Query Frame = 1 
Query:    7 SLLWYCRL--GALLALFVLW-WAGSGTLLADFGGDNAIYFLTANHYSPYGVSHAAAAQFAAQSVYPPLYPWLLALTGGGMSLAAAHRVTALIIILAGVAVFALARAVGLSRGAALAVLALCACARISLLEGLELHSEHLYL-----ACWASA 438
            S  WY  L    L  L+ +W W+   T L DFGGDNA Y LTA H+SP+      A+ FA  S YPPL+P +LALTGGG S+ AAH V A   ++A V  +    A+  +R  A     L       LLE L +HSE LYL     A W+ A
Sbjct:   15 SFSWYHLLLFSGLTVLYGVWCWS---TELGDFGGDNAYYLLTARHFSPWLGPSDVASHFAVHSPYPPLFPLVLALTGGGASVLAAHLVVAAGWVVAIVVFYLWLDALEFTRVPATVAAVLFGLLPAVLLEALSVHSEALYLPLTLVALWSIA 163
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BLAST of mRNA_P-wetherbeei_contig58157.1.1 vs. uniprot
Match: A0A836TYU4_9GAMM (Uncharacterized protein n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A836TYU4_9GAMM)

HSP 1 Score: 78.2 bits (191), Expect = 7.290e-14
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 1 
Query:   79 LLADFGGDNAIYFLTANHYSPYGVSHAAAAQFAAQSVYPPLYPWLLALTGGGMSLAAAHRVTALIIILAGVAVFALARAVGLSRGAALAVLALCACARISLLEGLELHSEHLYLACWASAALLLATERPSPR 474
            +LA FGGDNA Y LTA  +SPY  S  A   F+  S YPPLYP LL L GGG S+  AH +T   +I A + ++  A  +GL R  +L ++ + +  + + ++ L + SE+LYL    S   +++ +  S +
Sbjct:   26 ILAQFGGDNATYLLTAKLFSPYSQSTYAVEYFSIHSRYPPLYPLLLGLLGGGESVLIAHLLTTSFLIAAILVLYKWASIMGLGRLHSLVLIVIFSMMQNTYMQALSILSENLYLLLSLSVLYIISLKDNSEK 157
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BLAST of mRNA_P-wetherbeei_contig58157.1.1 vs. uniprot
Match: A0A0S8AHT0_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Desulfobacterales bacterium SG8_35 TaxID=1703400 RepID=A0A0S8AHT0_9DELT)

HSP 1 Score: 71.2 bits (173), Expect = 8.260e-12
Identity = 52/129 (40.31%), Postives = 72/129 (55.81%), Query Frame = 1 
Query:   37 LLALFVLW-WAGSGTLLADFGGDNAIYFLTANHYSPYGVSHAAAAQFAAQSVYPPLYPWLLALTGGGMSLAAAHRVTALIIILAGVAVFALARAVGLSRGAALAVLALCACARISLLEGLELHSEHLYL 420
            L AL++ W W      +A  GGDN IY LTA  YSP+      A  FAA S YPPL+P +L L GGG S+ AAH +    ++LA +A+ A   A+GL +  A  V+   A    ++   + + SE+LYL
Sbjct:   21 LTALYLFWTWNPE---VAGLGGDNGIYLLTARSYSPWSPPSLIAQHFAAHSQYPPLFPLVLGLLGGGESILAAHLINTACLLLAFLAIRAWLVALGLQKTTANLVVIFIALLPGTVKLAMFILSENLYL 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58157.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0S8EQN7_9GAMM1.340e-1542.76PMT_2 domain-containing protein n=1 Tax=Thiotricha... [more]
A0A836TYU4_9GAMM7.290e-1437.88Uncharacterized protein n=1 Tax=Thiotrichaceae bac... [more]
A0A0S8AHT0_9DELT8.260e-1240.31Uncharacterized protein (Fragment) n=1 Tax=Desulfo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58157contigP-wetherbeei_contig58157:3..485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size483
Hectar predicted targeting categorysignal peptide
Exons1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.841577-CDS-P-wetherbeei_contig58157:2..4851683186861.841577-CDS-P-wetherbeei_contig58157:2..485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58157 3..485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58157.1.1prot_P-wetherbeei_contig58157.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58157 3..485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58157.1.1

>prot_P-wetherbeei_contig58157.1.1 ID=prot_P-wetherbeei_contig58157.1.1|Name=mRNA_P-wetherbeei_contig58157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
RLSLLWYCRLGALLALFVLWWAGSGTLLADFGGDNAIYFLTANHYSPYGV
SHAAAAQFAAQSVYPPLYPWLLALTGGGMSLAAAHRVTALIIILAGVAVF
ALARAVGLSRGAALAVLALCACARISLLEGLELHSEHLYLACWASAALLL
ATERPSPRVLL
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mRNA from alignment at P-wetherbeei_contig58157:3..485-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58157.1.1 ID=mRNA_P-wetherbeei_contig58157.1.1|Name=mRNA_P-wetherbeei_contig58157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig58157:3..485- (Phaeothamnion wetherbeei SAG_119_79)
CGACTATCGCTACTCTGGTACTGCCGGCTAGGTGCCCTGCTGGCCTTGTT
CGTCCTGTGGTGGGCCGGCAGCGGCACTTTGCTCGCTGATTTCGGTGGCG
ACAACGCGATCTATTTTCTAACCGCCAATCACTACTCACCCTATGGCGTC
TCGCATGCGGCGGCGGCGCAATTCGCTGCCCAGAGCGTGTATCCGCCGCT
CTATCCGTGGCTGCTGGCGCTGACCGGTGGTGGCATGTCGCTGGCGGCCG
CCCACCGCGTGACCGCGCTGATCATCATCCTGGCCGGCGTCGCGGTATTT
GCACTGGCGCGTGCCGTCGGCTTGTCGCGCGGCGCCGCATTGGCAGTGCT
CGCTTTGTGTGCCTGCGCGCGTATCAGTCTGCTTGAAGGTCTGGAGCTGC
ACAGCGAACATCTTTATCTCGCCTGCTGGGCGAGCGCAGCGCTGCTGCTG
GCGACTGAGCGCCCGTCGCCACGCGTATTACTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58157:3..485-

>mRNA_P-wetherbeei_contig58157.1.1 ID=mRNA_P-wetherbeei_contig58157.1.1|Name=mRNA_P-wetherbeei_contig58157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig58157:3..485- (Phaeothamnion wetherbeei SAG_119_79)
CGACTATCGCTACTCTGGTACTGCCGGCTAGGTGCCCTGCTGGCCTTGTT
CGTCCTGTGGTGGGCCGGCAGCGGCACTTTGCTCGCTGATTTCGGTGGCG
ACAACGCGATCTATTTTCTAACCGCCAATCACTACTCACCCTATGGCGTC
TCGCATGCGGCGGCGGCGCAATTCGCTGCCCAGAGCGTGTATCCGCCGCT
CTATCCGTGGCTGCTGGCGCTGACCGGTGGTGGCATGTCGCTGGCGGCCG
CCCACCGCGTGACCGCGCTGATCATCATCCTGGCCGGCGTCGCGGTATTT
GCACTGGCGCGTGCCGTCGGCTTGTCGCGCGGCGCCGCATTGGCAGTGCT
CGCTTTGTGTGCCTGCGCGCGTATCAGTCTGCTTGAAGGTCTGGAGCTGC
ACAGCGAACATCTTTATCTCGCCTGCTGGGCGAGCGCAGCGCTGCTGCTG
GCGACTGAGCGCCCGTCGCCACGCGTATTACTG
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