mRNA_P-wetherbeei_contig58141.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58141.2.1
Unique NamemRNA_P-wetherbeei_contig58141.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58141.2.1 vs. uniprot
Match: UPI001BA5821C (hypothetical protein n=8 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA5821C)

HSP 1 Score: 84.0 bits (206), Expect = 5.640e-19
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 MAYRANQQLREDIWDYRSSSASDGSAGSQPDEDEKVVSFSRQPAKGHGTTALSLMQQAANMFE 189
            MAYRANQQLREDIWDYR  SA    A    +E+EKVV+F+RQPAKG GTTALSLMQQA  MFE
Sbjct:    1 MAYRANQQLREDIWDYRYPSAP---APLPDEEEEKVVNFARQPAKGPGTTALSLMQQATEMFE 60
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BLAST of mRNA_P-wetherbeei_contig58141.2.1 vs. uniprot
Match: UPI00201C3B69 (hypothetical protein n=2 Tax=Bradyrhizobium sp. dw_411 TaxID=2720082 RepID=UPI00201C3B69)

HSP 1 Score: 63.2 bits (152), Expect = 6.840e-11
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 MAYRANQQLREDIWDYRSSSASDGSAGSQPDEDEKVVSFSRQPAKGHGTTALSLMQQAANMF 186
            MA+RANQQLRED+WDYR  S    S    P E EK+VSF    ++ +GT+AL+L+QQAA++F
Sbjct:    1 MAFRANQQLREDMWDYRYKS----SPVEAPVESEKIVSFPPSTSREYGTSALNLVQQAADIF 58
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BLAST of mRNA_P-wetherbeei_contig58141.2.1 vs. uniprot
Match: A0A1H0F6X5_9BRAD (Uncharacterized protein n=3 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1H0F6X5_9BRAD)

HSP 1 Score: 58.2 bits (139), Expect = 5.450e-9
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 MAYRANQQLREDIWDYRSSSASDGSAGSQPDEDEKVVSFSRQPAKGHGTTALSLMQQAANMFE 189
            MAYR+NQQLREDIWDYR  S+S         E E V+ F R   + +G TAL L+ QAA +F+
Sbjct:    1 MAYRSNQQLREDIWDYRDRSSSR--------ERENVLRFPRSDEEDYGETALDLVNQAAELFD 55
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BLAST of mRNA_P-wetherbeei_contig58141.2.1 vs. uniprot
Match: A0A1M6X288_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M6X288_9BRAD)

HSP 1 Score: 52.4 bits (124), Expect = 9.560e-7
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 MAYRANQQLREDIWDYRSSSASDGSAGSQPDEDEKVVSFSRQPAKG----HGTTALSLMQQAANMF 186
            MA+ ANQQLREDIWDYR  S++         E+E ++ F +  AK     +GTTAL+L+ QAA +F
Sbjct:    1 MAFGANQQLREDIWDYRYKSSAA--------ENENILRFDQPAAKNAARDYGTTALNLVHQAAEIF 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58141.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI001BA5821C5.640e-1973.02hypothetical protein n=8 Tax=Bradyrhizobium TaxID=... [more]
UPI00201C3B696.840e-1154.84hypothetical protein n=2 Tax=Bradyrhizobium sp. dw... [more]
A0A1H0F6X5_9BRAD5.450e-950.79Uncharacterized protein n=3 Tax=Bradyrhizobiaceae ... [more]
A0A1M6X288_9BRAD9.560e-746.97Uncharacterized protein n=1 Tax=Bradyrhizobium lab... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58141contigP-wetherbeei_contig58141:317..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1298867.AUES01000010_gene5736
Model size189
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.49e-09
EggNOG OGs2AA5D@1|root,30ZEC@2|Bacteria,1RKMT@1224|Proteobacteria,2U9ZI@28211|Alphaproteobacteria,3JZQ7@41294|Bradyrhizobiaceae
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.6223803-CDS-P-wetherbeei_contig58141:316..5051683186861.6223803-CDS-P-wetherbeei_contig58141:316..505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58141 317..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58141.2.1prot_P-wetherbeei_contig58141.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58141 317..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58141.2.1

>prot_P-wetherbeei_contig58141.2.1 ID=prot_P-wetherbeei_contig58141.2.1|Name=mRNA_P-wetherbeei_contig58141.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
MAYRANQQLREDIWDYRSSSASDGSAGSQPDEDEKVVSFSRQPAKGHGTT
ALSLMQQAANMFE
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mRNA from alignment at P-wetherbeei_contig58141:317..505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58141.2.1 ID=mRNA_P-wetherbeei_contig58141.2.1|Name=mRNA_P-wetherbeei_contig58141.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig58141:317..505+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTACCGTGCAAATCAGCAGCTTCGTGAAGACATCTGGGACTACCG
CTCCTCTTCTGCGTCAGACGGCTCCGCCGGTTCCCAGCCCGACGAAGACG
AGAAGGTCGTCAGTTTTTCCCGGCAGCCGGCAAAAGGACACGGCACCACC
GCGCTGAGCCTGATGCAGCAGGCCGCCAATATGTTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58141:317..505+

>mRNA_P-wetherbeei_contig58141.2.1 ID=mRNA_P-wetherbeei_contig58141.2.1|Name=mRNA_P-wetherbeei_contig58141.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig58141:317..505+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTACCGTGCAAATCAGCAGCTTCGTGAAGACATCTGGGACTACCG
CTCCTCTTCTGCGTCAGACGGCTCCGCCGGTTCCCAGCCCGACGAAGACG
AGAAGGTCGTCAGTTTTTCCCGGCAGCCGGCAAAAGGACACGGCACCACC
GCGCTGAGCCTGATGCAGCAGGCCGCCAATATGTTCGAG
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