mRNA_P-wetherbeei_contig12595.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12595.2.1
Unique NamemRNA_P-wetherbeei_contig12595.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12595.2.1 vs. uniprot
Match: A0A127EWA7_9HYPH (AIG2 family protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EWA7_9HYPH)

HSP 1 Score: 186 bits (471), Expect = 2.810e-55
Identity = 94/145 (64.83%), Postives = 110/145 (75.86%), Query Frame = 3
Query:  468 DLGRDAAERPAFAV-TLHFAYGSNMSRSIMRRHAPLAQAIGVAALAGYRFLITADGYASVIPERAQTVHGVLWRLTPRDLIGLDRWENIAGGLYRKAILPVRCAGRRSQALVYLARPGGEGRPKQGYMELVIAAARERGLPEPYV 899
            DLGRDA E+    V TLHFAYG+NMSR+IM+RHA  A+ +G A LA +RF+IT DGYASV P+ AQTVHGVLWR+TP D + LD WEN+A GLY  A +PVR AG    ALVY ARP GEGRPK GY+ELV+AAARE  LP  Y+
Sbjct:    4 DLGRDATEQDTGRVMTLHFAYGANMSRAIMKRHARDAEPLGAAELAAHRFVITGDGYASVEPQPAQTVHGVLWRITPHDRVTLDAWENVAAGLYHTATVPVRHAGELMPALVYFARPRGEGRPKPGYIELVLAAAREWRLPGSYI 148          
BLAST of mRNA_P-wetherbeei_contig12595.2.1 vs. uniprot
Match: A0A317I1U9_9PROT (Gamma-glutamylcyclotransferase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317I1U9_9PROT)

HSP 1 Score: 170 bits (430), Expect = 3.910e-49
Identity = 90/144 (62.50%), Postives = 104/144 (72.22%), Query Frame = 3
Query:  471 LGRDAAER-PAFAVTLHFAYGSNMSRSIMRRHAPLAQAIGVAALAGYRFLITADGYASVIPERAQTVHGVLWRLTPRDLIGLDRWENIAGGLYRKAILPVRCAGRRSQALVYLARPGGEGRPKQGYMELVIAAARERGLPEPYV 899
            +G DAAE+  A ++ LHFAYGSNM R++MR HAP AQ +G+A LA  RF+ITADGYASV P R +TVHGVLWRLT RD + LD WE I    YR A L V  AGRR  ALVY+ARP   GR + GYMELVIAAA+E  LP  YV
Sbjct:    1 MGGDAAEQCGAQSLMLHFAYGSNMDRAVMRTHAPHAQPLGIATLADVRFVITADGYASVAPRRGETVHGVLWRLTSRDRVTLDAWEGITARRYRAAALTVGSAGRRRPALVYIARPLPAGRARAGYMELVIAAAQEWQLPAAYV 144          
BLAST of mRNA_P-wetherbeei_contig12595.2.1 vs. uniprot
Match: A0A1W7A0G0_9HYPH (Uncharacterized protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W7A0G0_9HYPH)

HSP 1 Score: 152 bits (383), Expect = 2.780e-42
Identity = 73/131 (55.73%), Postives = 94/131 (71.76%), Query Frame = 3
Query:  507 VTLHFAYGSNMSRSIMRRHAPLAQAIGVAALAGYRFLITADGYASVIPERAQTVHGVLWRLTPRDLIGLDRWENIAGGLYRKAILPVRCAGRRSQALVYLARPGGEGRPKQGYMELVIAAARERGLPEPYV 899
            + LHFAYGSNMSR  MR+  P A   G+A L  +RF++  +GYASV+P   +TVHGVLWR+TPRDL  L+ +EN+AGGLYR+A+LPV    +   AL+YL    GEGRP+ GY+ELV+ AARE  LP  Y+
Sbjct:    1 MLLHFAYGSNMSRVPMRQRCPGAAEAGLAILRHHRFVVMTNGYASVVPAPGETVHGVLWRITPRDLAALNAYENVAGGLYRQAMLPVIQGAKTMAALIYLGNDMGEGRPRPGYIELVVEAAREWNLPSDYI 131          
BLAST of mRNA_P-wetherbeei_contig12595.2.1 vs. uniprot
Match: A0A6N7GWV1_9HYPH (Gamma-glutamylcyclotransferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GWV1_9HYPH)

HSP 1 Score: 148 bits (374), Expect = 6.180e-41
Identity = 71/131 (54.20%), Postives = 93/131 (70.99%), Query Frame = 3
Query:  507 VTLHFAYGSNMSRSIMRRHAPLAQAIGVAALAGYRFLITADGYASVIPERAQTVHGVLWRLTPRDLIGLDRWENIAGGLYRKAILPVRCAGRRSQALVYLARPGGEGRPKQGYMELVIAAARERGLPEPYV 899
            +T+HFAYGSNMSR  M+   P A A+G A LAG+RF+I  DGY S+ P+    VHGVLW+L  RDL  ++ +EN+AGGLY + +LPV   G+R  +LVY+A   GEG P+ GYM LV+ AAR+  LPEPY+
Sbjct:    1 MTVHFAYGSNMSRPHMQARCPGATALGTATLAGWRFVINPDGYGSIAPQPGGLVHGVLWKLGARDLAAINAYENVAGGLYVRRMLPVLHEGKRQTSLVYIAVRQGEGTPRPGYMALVVEAARDWALPEPYI 131          
BLAST of mRNA_P-wetherbeei_contig12595.2.1 vs. uniprot
Match: A0A363TGB0_9BRAD (Gamma-glutamylcyclotransferase n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TGB0_9BRAD)

HSP 1 Score: 144 bits (363), Expect = 2.730e-39
Identity = 72/131 (54.96%), Postives = 93/131 (70.99%), Query Frame = 3
Query:  507 VTLHFAYGSNMSRSIMRRHAPLAQAIGVAALAGYRFLITADGYASVIPERAQTVHGVLWRLTPRDLIGLDRWENIAGGLYRKAILPVRCAGRRSQALVYLARPGGEGRPKQGYMELVIAAARERGLPEPYV 899
            +TL+FAYGSNM+R+ M R  P AQ  G AAL G+RF+IT D YAS++P     VHGVLWRL PRDL  L+ +E++  GLYR+A L VR  GR ++ALVY+ R   EGRP  GY+E V+AA R+  LP+ Y+
Sbjct:    1 MTLYFAYGSNMARAPMARRCPTAQPHGPAALHGWRFVITTDRYASIVPAPGGVVHGVLWRLAPRDLAALNAYESLDSGLYRRARLGVRIRGRVARALVYVGRERAEGRPAPGYVETVVAAGRDWRLPQRYL 131          
BLAST of mRNA_P-wetherbeei_contig12595.2.1 vs. uniprot
Match: A0A537SY16_9PROT (Gamma-glutamylcyclotransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SY16_9PROT)

HSP 1 Score: 144 bits (362), Expect = 3.850e-39
Identity = 69/131 (52.67%), Postives = 92/131 (70.23%), Query Frame = 3
Query:  507 VTLHFAYGSNMSRSIMRRHAPLAQAIGVAALAGYRFLITADGYASVIPERAQTVHGVLWRLTPRDLIGLDRWENIAGGLYRKAILPVRCAGRRSQALVYLARPGGEGRPKQGYMELVIAAARERGLPEPYV 899
            +TLHFAYGSNMSR +MR   P A+AIG A L G+RFLI  +G+ S+ P+    VHGVLWRL+ RD+  ++ +E+I   LY +  LPVRC   ++ ALVY+AR  GEG P+ GY+ LV+ AARE  LP+ Y+
Sbjct:    1 MTLHFAYGSNMSRVLMRARCPRAEAIGTATLLGWRFLIIPEGFGSIAPQPGGRVHGVLWRLSARDVAAVNAYESIDSRLYMRRRLPVRCGATQAMALVYIARRQGEGLPRPGYIPLVVEAAREWHLPDAYI 131          
BLAST of mRNA_P-wetherbeei_contig12595.2.1 vs. uniprot
Match: A0A537UZ61_9PROT (Gamma-glutamylcyclotransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537UZ61_9PROT)

HSP 1 Score: 140 bits (353), Expect = 8.520e-38
Identity = 67/131 (51.15%), Postives = 92/131 (70.23%), Query Frame = 3
Query:  507 VTLHFAYGSNMSRSIMRRHAPLAQAIGVAALAGYRFLITADGYASVIPERAQTVHGVLWRLTPRDLIGLDRWENIAGGLYRKAILPVRCAGRRSQALVYLARPGGEGRPKQGYMELVIAAARERGLPEPYV 899
            +TLHFAYGSNMSR++M      A+A G+A L+G+RF+I  +G+ S+ P     VHGVLWRL+ RDL  ++ +E++  GLY +  LPVRC   ++ ALVY+AR  GEG P+ GY+ LV+ AARE  LPE Y+
Sbjct:    1 MTLHFAYGSNMSRALMGARCRGAEAAGIAVLSGWRFVINPEGFGSIAPRPGGRVHGVLWRLSARDLAAINAYESVDSGLYLRRRLPVRCGDVQAMALVYIARRQGEGTPRPGYISLVVEAAREWQLPEIYI 131          
BLAST of mRNA_P-wetherbeei_contig12595.2.1 vs. uniprot
Match: UPI001843DB7E (Gamma-glutamylcyclotransferase n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI001843DB7E)

HSP 1 Score: 139 bits (351), Expect = 1.690e-37
Identity = 71/131 (54.20%), Postives = 88/131 (67.18%), Query Frame = 3
Query:  507 VTLHFAYGSNMSRSIMRRHAPLAQAIGVAALAGYRFLITADGYASVIPERAQTVHGVLWRLTPRDLIGLDRWENIAGGLYRKAILPVRCAGRRSQALVYLARPGGEGRPKQGYMELVIAAARERGLPEPYV 899
            +TL+FAYGSNMSR++MRR  P A+ +G A L G+R LI  DGYA+V+P     V GVLWRL+PRD   L+ +E    GLYR   + VR    R +ALVY+AR   EGRP+ GY  LV+ AAR  GLP PYV
Sbjct:    1 MTLYFAYGSNMSRALMRRRCPAARELGSAVLDGFRLLINDDGYATVVPSAGGRVEGVLWRLSPRDRAALNAYERTDIGLYRAVPMAVRAGVARVRALVYVARSRREGRPRPGYHALVVEAARAAGLPAPYV 131          
BLAST of mRNA_P-wetherbeei_contig12595.2.1 vs. uniprot
Match: A0A3S4B3M5_9HYPH (GGACT domain-containing protein n=1 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A3S4B3M5_9HYPH)

HSP 1 Score: 139 bits (350), Expect = 2.390e-37
Identity = 69/131 (52.67%), Postives = 90/131 (68.70%), Query Frame = 3
Query:  507 VTLHFAYGSNMSRSIMRRHAPLAQAIGVAALAGYRFLITADGYASVIPERAQTVHGVLWRLTPRDLIGLDRWENIAGGLYRKAILPVRCAGRRSQALVYLARPGGEGRPKQGYMELVIAAARERGLPEPYV 899
            +TL+FAYGSNMSR +MRR  P A+ IG A L G+R ++  DGY +++P     + GVLWRLTPRD   L+ +E +  GLYR A + VR    R +AL Y+AR    GRP+ GY+ LV+AAARE GLPEP+V
Sbjct:    1 MTLYFAYGSNMSRPLMRRRCPFAREIGPAVLDGFRAIVNDDGYITIVPAAGARLPGVLWRLTPRDRAALNAYERLDVGLYRAAPVTVRTGRVRVRALAYVARSRRRGRPRPGYLALVVAAAREVGLPEPHV 131          
BLAST of mRNA_P-wetherbeei_contig12595.2.1 vs. uniprot
Match: A0A6N7GQN7_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GQN7_9HYPH)

HSP 1 Score: 139 bits (350), Expect = 3.740e-37
Identity = 72/166 (43.37%), Postives = 106/166 (63.86%), Query Frame = 1
Query:    7 LFSPSGRLAPRSFAVAVLAVYVLSFLSQALLSAAVTGRAGLWPFAVLQALLIWTWFAVHARRLRDAGRSSGFALGIACLYALAMXXXXXXXXXXXXXDS-SSEAAQTGQGLLHLFAVLYVLGVLLGSSDFGVLGYWLVGFLALILTPVAIALGFSIWAGTRPSVPP 501
            LFS SGR+AP+ FA+A +AVY+ SFLSQ LL+A +T RA + PF ++Q  + WTW+A+H RRLRDAGR +G A+ +  LY+LA+                +   A    G   +F VL+++G + G  + G+ GY L+G +AL++ P+ IA+ F++W GTRPS  P
Sbjct:    4 LFSASGRIAPKPFALAAIAVYLASFLSQFLLAAPITVRASVVPFLLVQIAIAWTWYALHVRRLRDAGRPTGSAIALTVLYSLAIVLLLLVMLAIDPSARPTGPEASPFAGAFQIFLVLFLIGTIAGDPNLGMFGYVLLGVIALVMLPIVIAIIFTVWVGTRPSATP 169          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12595.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127EWA7_9HYPH2.810e-5564.83AIG2 family protein n=1 Tax=Rhodoplanes sp. Z2-YC6... [more]
A0A317I1U9_9PROT3.910e-4962.50Gamma-glutamylcyclotransferase n=1 Tax=Proteobacte... [more]
A0A1W7A0G0_9HYPH2.780e-4255.73Uncharacterized protein n=1 Tax=Pseudorhodoplanes ... [more]
A0A6N7GWV1_9HYPH6.180e-4154.20Gamma-glutamylcyclotransferase n=1 Tax=Hyphomicrob... [more]
A0A363TGB0_9BRAD2.730e-3954.96Gamma-glutamylcyclotransferase n=1 Tax=Bradyrhizob... [more]
A0A537SY16_9PROT3.850e-3952.67Gamma-glutamylcyclotransferase n=1 Tax=Alphaproteo... [more]
A0A537UZ61_9PROT8.520e-3851.15Gamma-glutamylcyclotransferase n=1 Tax=Alphaproteo... [more]
UPI001843DB7E1.690e-3754.20Gamma-glutamylcyclotransferase n=1 Tax=Rhodoplanes... [more]
A0A3S4B3M5_9HYPH2.390e-3752.67GGACT domain-containing protein n=1 Tax=Rhodoplane... [more]
A0A6N7GQN7_9HYPH3.740e-3743.37Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12595contigP-wetherbeei_contig12595:1067..1965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size899
Hectar predicted targeting categorysignal anchor
Exons1
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185954.0536945-CDS-P-wetherbeei_contig12595:1066..15761683185954.0536945-CDS-P-wetherbeei_contig12595:1066..1576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12595 1067..1576 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185954.06314-UTR-P-wetherbeei_contig12595:1576..19651683185954.06314-UTR-P-wetherbeei_contig12595:1576..1965Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12595 1577..1965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12595.2.1prot_P-wetherbeei_contig12595.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12595 1067..1576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12595.2.1

>prot_P-wetherbeei_contig12595.2.1 ID=prot_P-wetherbeei_contig12595.2.1|Name=mRNA_P-wetherbeei_contig12595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
MSLFSPSGRLAPRSFAVAVLAVYVLSFLSQALLSAAVTGRAGLWPFAVLQ
ALLIWTWFAVHARRLRDAGRSSGFALGIACLYALAMVLLLLVMVMITATD
SSSEAAQTGQGLLHLFAVLYVLGVLLGSSDFGVLGYWLVGFLALILTPVA
IALGFSIWAGTRPSVPPSP*
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mRNA from alignment at P-wetherbeei_contig12595:1067..1965+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12595.2.1 ID=mRNA_P-wetherbeei_contig12595.2.1|Name=mRNA_P-wetherbeei_contig12595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=899bp|location=Sequence derived from alignment at P-wetherbeei_contig12595:1067..1965+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCTGTTCTCACCCTCCGGCCGGTTGGCGCCGCGGTCGTTCGCCGT CGCGGTGCTCGCGGTCTATGTCCTGAGCTTCCTGTCGCAGGCTTTGTTGT CGGCGGCGGTCACCGGGCGAGCCGGCCTCTGGCCCTTCGCTGTCCTGCAG GCGCTGCTGATCTGGACCTGGTTTGCCGTTCACGCCAGGCGCCTGCGCGA CGCCGGGCGGTCTTCGGGCTTCGCGCTCGGCATTGCCTGCCTCTATGCGC TGGCGATGGTGCTGCTGCTGCTGGTCATGGTGATGATCACCGCGACGGAC AGCAGCAGCGAAGCCGCGCAAACCGGCCAAGGTCTGCTCCACCTCTTTGC TGTGTTGTATGTTCTGGGCGTGCTGCTCGGAAGTTCGGACTTCGGCGTGC TTGGCTATTGGCTGGTGGGTTTCCTGGCGCTGATCCTGACGCCGGTCGCG ATCGCGCTCGGTTTTTCGATCTGGGCCGGGACGCGGCCGAGCGTCCCGCC TTCGCCGTGACGCTGCACTTCGCTTATGGCTCGAACATGAGCCGGTCGAT CATGCGCCGGCACGCGCCGCTGGCGCAGGCGATCGGCGTGGCGGCGCTGG CCGGCTATCGCTTCCTCATCACTGCCGACGGCTATGCCTCGGTGATCCCG GAGCGCGCGCAGACCGTGCACGGCGTGCTGTGGCGGCTGACGCCGCGCGA TCTCATCGGGCTCGACCGCTGGGAGAACATCGCCGGCGGCCTTTACCGCA AAGCGATCCTGCCGGTGCGTTGCGCGGGCCGCCGAAGCCAGGCGCTGGTC TATTTGGCGCGGCCCGGCGGCGAAGGCCGGCCGAAGCAGGGATATATGGA GTTGGTGATCGCCGCCGCGCGGGAACGCGGCTTGCCGGAGCCCTACGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12595:1067..1965+

>mRNA_P-wetherbeei_contig12595.2.1 ID=mRNA_P-wetherbeei_contig12595.2.1|Name=mRNA_P-wetherbeei_contig12595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig12595:1067..1965+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCTGTTCTCACCCTCCGGCCGGTTGGCGCCGCGGTCGTTCGCCGT
CGCGGTGCTCGCGGTCTATGTCCTGAGCTTCCTGTCGCAGGCTTTGTTGT
CGGCGGCGGTCACCGGGCGAGCCGGCCTCTGGCCCTTCGCTGTCCTGCAG
GCGCTGCTGATCTGGACCTGGTTTGCCGTTCACGCCAGGCGCCTGCGCGA
CGCCGGGCGGTCTTCGGGCTTCGCGCTCGGCATTGCCTGCCTCTATGCGC
TGGCGATGGTGCTGCTGCTGCTGGTCATGGTGATGATCACCGCGACGGAC
AGCAGCAGCGAAGCCGCGCAAACCGGCCAAGGTCTGCTCCACCTCTTTGC
TGTGTTGTATGTTCTGGGCGTGCTGCTCGGAAGTTCGGACTTCGGCGTGC
TTGGCTATTGGCTGGTGGGTTTCCTGGCGCTGATCCTGACGCCGGTCGCG
ATCGCGCTCGGTTTTTCGATCTGGGCCGGGACGCGGCCGAGCGTCCCGCC
TTCGCCGTGA
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