mRNA_P-wetherbeei_contig57769.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57769.1.1
Unique NamemRNA_P-wetherbeei_contig57769.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57769.1.1 vs. uniprot
Match: A0A1M5X790_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5X790_9BRAD)

HSP 1 Score: 49.3 bits (116), Expect = 1.080e-5
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 3 
Query:   15 PARWLYGL*RALPGERLFCLRRALGSRMPPGAWTPATRRQDHTSLPYASAALVR 176
            P   +YGL RALPG+RLF     +   M     TPA+RRQDHTS P A +ALVR
Sbjct:   32 PCAMVYGLYRALPGDRLFD---TVVGEMTSTNLTPASRRQDHTSSPSAFSALVR 82
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BLAST of mRNA_P-wetherbeei_contig57769.1.1 vs. uniprot
Match: A0A1M5MI71_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5MI71_9BRAD)

HSP 1 Score: 50.1 bits (118), Expect = 1.260e-5
Identity = 28/54 (51.85%), Postives = 33/54 (61.11%), Query Frame = 3 
Query:    3 HPTFPARWLYGL*RALPGERLFCLRRALGSRMPPGAWTPATRRQDHTSLPYASA 164
            HPTFP   +YGL RALPG+RL C RR           TPA+  QDHTS P A++
Sbjct:   30 HPTFPHAMVYGLYRALPGDRLSCHRRYADRS---ANLTPASGCQDHTSSPSAAS 80
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BLAST of mRNA_P-wetherbeei_contig57769.1.1 vs. uniprot
Match: A0A5H2YYI5_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. SG09 TaxID=2599805 RepID=A0A5H2YYI5_9BRAD)

HSP 1 Score: 48.5 bits (114), Expect = 1.350e-5
Identity = 29/62 (46.77%), Postives = 31/62 (50.00%), Query Frame = 3 
Query:    6 PTFPARWLYGL*RALPGERLFCLRRALGSRMPPG-----------AWTPATRRQDHTSLPYA 158
            P FPA+WLYGL R LPGER  C    +  RM  G            W     RQDHT LPYA
Sbjct:   22 PAFPAQWLYGLCRDLPGER--CTIAPVALRMADGRARLDDTHHHKTWRTDPGRQDHTILPYA 81
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57769.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1M5X790_9BRAD1.080e-553.70Uncharacterized protein n=1 Tax=Bradyrhizobium ery... [more]
A0A1M5MI71_9BRAD1.260e-551.85Uncharacterized protein n=1 Tax=Bradyrhizobium ery... [more]
A0A5H2YYI5_9BRAD1.350e-546.77Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57769contigP-wetherbeei_contig57769:299..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size207
Hectar predicted targeting categoryother localisation
Exons1
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.2779167-CDS-P-wetherbeei_contig57769:298..5051683186856.2779167-CDS-P-wetherbeei_contig57769:298..505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57769 299..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57769.1.1prot_P-wetherbeei_contig57769.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57769 299..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57769.1.1

>prot_P-wetherbeei_contig57769.1.1 ID=prot_P-wetherbeei_contig57769.1.1|Name=mRNA_P-wetherbeei_contig57769.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
NIRHSLRDGFTAYNVLSPENGSFASVAPWEVECPQVHGRQQRGVRTTRLC
RTLRPRSSGDNLSVHRSPP
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mRNA from alignment at P-wetherbeei_contig57769:299..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57769.1.1 ID=mRNA_P-wetherbeei_contig57769.1.1|Name=mRNA_P-wetherbeei_contig57769.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig57769:299..505- (Phaeothamnion wetherbeei SAG_119_79)
AACATCCGACATTCCCTGCGCGATGGCTTTACGGCTTATAACGTGCTCTC
CCCGGAGAACGGCTCTTTTGCCTCCGTCGCGCCCTGGGAAGTCGAATGCC
CCCAGGTGCATGGACGCCAGCAACGCGGCGTCAGGACCACACGTCTTTGC
CGTACGCTTCGGCCGCGCTCGTCAGGCGACAACCTCAGCGTCCACCGCTC
CCCGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57769:299..505-

>mRNA_P-wetherbeei_contig57769.1.1 ID=mRNA_P-wetherbeei_contig57769.1.1|Name=mRNA_P-wetherbeei_contig57769.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig57769:299..505- (Phaeothamnion wetherbeei SAG_119_79)
AACATCCGACATTCCCTGCGCGATGGCTTTACGGCTTATAACGTGCTCTC
CCCGGAGAACGGCTCTTTTGCCTCCGTCGCGCCCTGGGAAGTCGAATGCC
CCCAGGTGCATGGACGCCAGCAACGCGGCGTCAGGACCACACGTCTTTGC
CGTACGCTTCGGCCGCGCTCGTCAGGCGACAACCTCAGCGTCCACCGCTC
CCCGCCC
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