mRNA_P-wetherbeei_contig57740.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57740.1.1
Unique NamemRNA_P-wetherbeei_contig57740.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57740.1.1 vs. uniprot
Match: A0A7V8VXA7_9CHLR (Sec-independent protein translocase protein TatA n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8VXA7_9CHLR)

HSP 1 Score: 58.9 bits (141), Expect = 3.900e-10
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 LVIVVIIFGVGKLPEIGGALGKGIREFKQESGVDENGKPIDDAKLDKGTST 153
            LVIVVIIFGVGKLPEIGGALGKGIREFK ES  +E     + A+L KG S+
Sbjct:   13 LVIVVIIFGVGKLPEIGGALGKGIREFKTESTTEEK----EAARLAKGDSS 59          
BLAST of mRNA_P-wetherbeei_contig57740.1.1 vs. uniprot
Match: A0A7V9B1U8_9CHLR (Sec-independent protein translocase protein TatA n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9B1U8_9CHLR)

HSP 1 Score: 57.8 bits (138), Expect = 1.200e-9
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1
Query:    1 LVIVVIIFGVGKLPEIGGALGKGIREFKQESGVDENGKPID 123
            LVI++IIFGVGKLPEIGGALGKGI+EFK E+  D++GK I+
Sbjct:   14 LVIIIIIFGVGKLPEIGGALGKGIKEFKTEA-TDDDGKKIE 53          
BLAST of mRNA_P-wetherbeei_contig57740.1.1 vs. uniprot
Match: A0A7W0PLM7_9CHLR (Sec-independent protein translocase protein TatA n=3 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PLM7_9CHLR)

HSP 1 Score: 57.4 bits (137), Expect = 1.620e-9
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1
Query:    1 LVIVVIIFGVGKLPEIGGALGKGIREFKQESGVDE 105
            LVI+VIIFGVGKLPEIGGALGKGIREFK ES  +E
Sbjct:   13 LVIIVIIFGVGKLPEIGGALGKGIREFKTESTAEE 47          
BLAST of mRNA_P-wetherbeei_contig57740.1.1 vs. uniprot
Match: A0A838GG61_9CHLR (Twin-arginine translocase TatA/TatE family subunit (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GG61_9CHLR)

HSP 1 Score: 56.2 bits (134), Expect = 1.720e-9
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1
Query:    4 VIVVIIFGVGKLPEIGGALGKGIREFKQESGVDE 105
            VI+VIIFGVGKLPEIGGALGKGIREFK ES  +E
Sbjct:   14 VIIVIIFGVGKLPEIGGALGKGIREFKTESTTEE 47          
BLAST of mRNA_P-wetherbeei_contig57740.1.1 vs. uniprot
Match: A0A0A2HVP0_9DELT (Sec-independent protein translocase protein TatA n=4 Tax=Bacteria TaxID=2 RepID=A0A0A2HVP0_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 2.420e-9
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 LVIVVIIFGVGKLPEIGGALGKGIREFKQESGVDENGKPIDDAKLDKGTST 153
            LVIVVIIFG GKLPEIG  +GKGI+ FK  +  +E  K IDD K D  T+T
Sbjct:   13 LVIVVIIFGAGKLPEIGSGIGKGIKNFKDATKKEEEPKKIDDDKNDSSTAT 63          
BLAST of mRNA_P-wetherbeei_contig57740.1.1 vs. uniprot
Match: A0A497AZ52_9CHLR (Sec-independent protein translocase protein TatA n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497AZ52_9CHLR)

HSP 1 Score: 55.1 bits (131), Expect = 6.180e-9
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 LVIVVIIFGVGKLPEIGGALGKGIREFKQESGVDENGKPIDDAKLD 138
            LVI++IIFGVGKLPE+GGALGK IREF+Q S   E  +P ++ K D
Sbjct:   13 LVIIIIIFGVGKLPELGGALGKSIREFRQASAGMEEEEPKEEHKAD 58          
BLAST of mRNA_P-wetherbeei_contig57740.1.1 vs. uniprot
Match: A0A3A0AA37_9CHLR (Sec-independent protein translocase protein TatA n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AA37_9CHLR)

HSP 1 Score: 54.7 bits (130), Expect = 1.250e-8
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    1 LVIVVIIFGVGKLPEIGGALGKGIREFKQES-GVDENGKPIDDAKLDK 141
            L+IV+IIFGVGKLPEIGGALGKGIREF+  +    ++G P+ + K DK
Sbjct:   13 LLIVIIIFGVGKLPEIGGALGKGIREFRSNATDPGDDGAPVAEKKSDK 60          
BLAST of mRNA_P-wetherbeei_contig57740.1.1 vs. uniprot
Match: A0A1M7Y8A8_9DELT (Sec-independent protein translocase protein TatA n=2 Tax=Desulfocapsaceae TaxID=2886822 RepID=A0A1M7Y8A8_9DELT)

HSP 1 Score: 54.3 bits (129), Expect = 1.430e-8
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 LVIVVIIFGVGKLPEIGGALGKGIREFKQESGVDENGKPIDDAKLDKGTST 153
            LVI+VIIFG GKLPEIG  +GKGI+ FK+ +  D+  K ID+ K D    T
Sbjct:   13 LVIIVIIFGAGKLPEIGSGIGKGIKNFKEATRQDDTAKKIDEEKKDNSDKT 63          
BLAST of mRNA_P-wetherbeei_contig57740.1.1 vs. uniprot
Match: A0A7C6TDQ1_9CHLR (Sec-independent protein translocase protein TatA n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6TDQ1_9CHLR)

HSP 1 Score: 54.3 bits (129), Expect = 1.540e-8
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 LVIVVIIFGVGKLPEIGGALGKGIREFKQESGVDENGKPIDDAKLD 138
            LVIV+I+FGVGKLPE+GGALGKGIREF+  S      K I++AK D
Sbjct:   13 LVIVIIVFGVGKLPEVGGALGKGIREFRNAS------KEIEEAKED 52          
BLAST of mRNA_P-wetherbeei_contig57740.1.1 vs. uniprot
Match: A0A444IVZ8_9DELT (Sec-independent protein translocase protein TatA n=3 Tax=Candidatus Electrothrix TaxID=1859128 RepID=A0A444IVZ8_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 1.900e-8
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1
Query:    1 LVIVVIIFGVGKLPEIGGALGKGIREFKQESGVDENGKPIDD 126
            LVI+VIIFG GKLPEIG  +GKGIR FK  +  D++ KPI+D
Sbjct:   13 LVIIVIIFGAGKLPEIGSGIGKGIRNFKDATKSDDDPKPIED 54          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57740.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V8VXA7_9CHLR3.900e-1070.59Sec-independent protein translocase protein TatA n... [more]
A0A7V9B1U8_9CHLR1.200e-973.17Sec-independent protein translocase protein TatA n... [more]
A0A7W0PLM7_9CHLR1.620e-985.71Sec-independent protein translocase protein TatA n... [more]
A0A838GG61_9CHLR1.720e-985.29Twin-arginine translocase TatA/TatE family subunit... [more]
A0A0A2HVP0_9DELT2.420e-960.78Sec-independent protein translocase protein TatA n... [more]
A0A497AZ52_9CHLR6.180e-963.04Sec-independent protein translocase protein TatA n... [more]
A0A3A0AA37_9CHLR1.250e-862.50Sec-independent protein translocase protein TatA n... [more]
A0A1M7Y8A8_9DELT1.430e-854.90Sec-independent protein translocase protein TatA n... [more]
A0A7C6TDQ1_9CHLR1.540e-865.22Sec-independent protein translocase protein TatA n... [more]
A0A444IVZ8_9DELT1.900e-864.29Sec-independent protein translocase protein TatA n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57740contigP-wetherbeei_contig57740:357..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog56780.SYN_00926
PFAMsMttA_Hcf106
Model size153
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K03116
KEGG TC2.A.64
KEGG Pathwayko03060,ko03070,map03060,map03070
KEGG ModuleM00336
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.27e-08
EggNOG OGsCOG1826@1|root,COG1826@2|Bacteria,1NGDP@1224|Proteobacteria,42V5P@68525|delta/epsilon subdivisions,2WSKZ@28221|Deltaproteobacteria,2MQQE@213462|Syntrophobacterales
DescriptionPart of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system
Cds size153
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.0331457-CDS-P-wetherbeei_contig57740:356..5091683186856.0331457-CDS-P-wetherbeei_contig57740:356..509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57740 357..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57740.1.1prot_P-wetherbeei_contig57740.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57740 357..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57740.1.1

>prot_P-wetherbeei_contig57740.1.1 ID=prot_P-wetherbeei_contig57740.1.1|Name=mRNA_P-wetherbeei_contig57740.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
LVIVVIIFGVGKLPEIGGALGKGIREFKQESGVDENGKPIDDAKLDKGTS
T
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mRNA from alignment at P-wetherbeei_contig57740:357..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57740.1.1 ID=mRNA_P-wetherbeei_contig57740.1.1|Name=mRNA_P-wetherbeei_contig57740.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig57740:357..509- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTCATCGTCGTGATCATCTTCGGTGTCGGCAAGCTGCCGGAAATCGG GGGCGCCCTCGGCAAGGGCATCCGCGAGTTCAAGCAGGAATCCGGCGTCG ATGAGAACGGCAAGCCGATCGACGACGCCAAGCTCGACAAGGGCACGTCG ACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57740:357..509-

>mRNA_P-wetherbeei_contig57740.1.1 ID=mRNA_P-wetherbeei_contig57740.1.1|Name=mRNA_P-wetherbeei_contig57740.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig57740:357..509- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTCATCGTCGTGATCATCTTCGGTGTCGGCAAGCTGCCGGAAATCGG
GGGCGCCCTCGGCAAGGGCATCCGCGAGTTCAAGCAGGAATCCGGCGTCG
ATGAGAACGGCAAGCCGATCGACGACGCCAAGCTCGACAAGGGCACGTCG
ACC
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