mRNA_P-wetherbeei_contig57608.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57608.1.1
Unique NamemRNA_P-wetherbeei_contig57608.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57608.1.1 vs. uniprot
Match: A0A7V9AKC9_9CHLR (Carbohydrate ABC transporter permease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9AKC9_9CHLR)

HSP 1 Score: 280 bits (716), Expect = 8.890e-93
Identity = 136/167 (81.44%), Postives = 156/167 (93.41%), Query Frame = 1
Query:    1 HWLWNSFGIAVLTTLGKLAISVPAAFAFSRLKFRGDKLLFAMVLATMIVPGVVTVVPNYVVVSRLGWLDTWTGVIIPSLPATAFYVFLLRQSMLTLPQDLIDAAKLDGSSTMQMLWQIVMPNVRPAIAVVMILSFLGAWNQYLWPLLVLNDFVSKTLATGMQFFTSN 501
             W WNSFGIAVLTTLGK+ ISVPAAFAF+RL+FRGDK+LFAMVLATMIVPG+VTVVPNY++VS L W++TW GVIIPSLPATAF+VFLLRQS+L LPQDL+DAA++DG+ST ++L QIVMPN+RPAIAVV ILSFLGAWNQYLWPLL+LNDF SKTLATGMQFFT+N
Sbjct:   81 RWFWNSFGIAVLTTLGKILISVPAAFAFARLRFRGDKILFAMVLATMIVPGIVTVVPNYILVSNLNWMNTWVGVIIPSLPATAFFVFLLRQSVLQLPQDLLDAARIDGASTFKLLLQIVMPNIRPAIAVVTILSFLGAWNQYLWPLLILNDFESKTLATGMQFFTAN 247          
BLAST of mRNA_P-wetherbeei_contig57608.1.1 vs. uniprot
Match: UPI001555BE0B (carbohydrate ABC transporter permease n=1 Tax=Pseudoruegeria sp. HB172150 TaxID=2721164 RepID=UPI001555BE0B)

HSP 1 Score: 174 bits (442), Expect = 1.840e-51
Identity = 86/168 (51.19%), Postives = 119/168 (70.83%), Query Frame = 1
Query:    4 WLWNSFGIAVLTTLGKLAISVPAAFAFSRLKFRGDKLLFAMVLATMIVPGVVTVVPNYVVVSRLGWLDTWTGVIIPSLPATAFYVFLLRQSMLTLPQDLIDAAKLDGSSTMQMLWQIVMPNVRPAIAVVMILSFLGAWNQYLWPLLVLNDFVSKTLATGMQFFTSNQD 507
            WLWNS  IA L T+GKLAI+VPA FAF+ L+FRG +  F  ++ATM  P ++ +VP YV +S +GW DT  GVI+PS+    FYVF +RQS  TLP+++ +AA++D +   + L QI +PNV P+IA + ++SF+GAWN YLW LLVL+    +TLA G++ FTS  D
Sbjct:   69 WLWNSILIATLVTVGKLAIAVPAGFAFAHLRFRGREAAFWTIVATMTFPTIIGIVPLYVGISMVGWFDTRAGVIVPSIAYIGFYVFFMRQSFRTLPREMFEAARMDAAGPFRQLLQIAIPNVLPSIASLSVISFMGAWNIYLWALLVLDSPEKRTLAVGLKAFTSIDD 236          
BLAST of mRNA_P-wetherbeei_contig57608.1.1 vs. uniprot
Match: A0A5P2ZS29_9RHOB (Lactose transport system permease protein LacG n=2 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A5P2ZS29_9RHOB)

HSP 1 Score: 170 bits (430), Expect = 1.150e-49
Identity = 85/168 (50.60%), Postives = 117/168 (69.64%), Query Frame = 1
Query:    4 WLWNSFGIAVLTTLGKLAISVPAAFAFSRLKFRGDKLLFAMVLATMIVPGVVTVVPNYVVVSRLGWLDTWTGVIIPSLPATAFYVFLLRQSMLTLPQDLIDAAKLDGSSTMQMLWQIVMPNVRPAIAVVMILSFLGAWNQYLWPLLVLNDFVSKTLATGMQFFTSNQD 507
            WLWNS  IA   TLGKL I+VPA FAF+ L+FRG +  F  ++ATM  P V+ +VP YV +S+LGW D+  GVI+PS+    FYVF +RQ+  TLP ++ +AA++D +   + L QI +PNV PA+A + ++SF+GAWN YLW LLVL+    +TLA G++ FTS  D
Sbjct:   68 WLWNSILIATAVTLGKLVIAVPAGFAFAHLRFRGREAAFWTIVATMTFPTVIGIVPLYVGISKLGWFDSRAGVIVPSIAYIGFYVFFMRQTFRTLPGEMFEAARIDSAGPFRQLIQIGLPNVLPAMASLSVISFMGAWNIYLWALLVLDSPEKRTLAVGLKAFTSIDD 235          
BLAST of mRNA_P-wetherbeei_contig57608.1.1 vs. uniprot
Match: A0A7W6E729_9RHOB (Multiple sugar transport system permease protein/sn-glycerol 3-phosphate transport system permease protein n=1 Tax=Sulfitobacter undariae TaxID=1563671 RepID=A0A7W6E729_9RHOB)

HSP 1 Score: 168 bits (425), Expect = 7.070e-49
Identity = 84/169 (49.70%), Postives = 118/169 (69.82%), Query Frame = 1
Query:    1 HWLWNSFGIAVLTTLGKLAISVPAAFAFSRLKFRGDKLLFAMVLATMIVPGVVTVVPNYVVVSRLGWLDTWTGVIIPSLPATAFYVFLLRQSMLTLPQDLIDAAKLDGSSTMQMLWQIVMPNVRPAIAVVMILSFLGAWNQYLWPLLVLNDFVSKTLATGMQFFTSNQD 507
            +W+WNS  IAVL ++GKLAI+VPA FAFS ++FRG   LF +++ATM  P ++ +VP Y+ +S +GW DT T VI+PS+    FYVF +RQ   +LP  + +AA+LD +   + L++I +PNV PAIA + I+SFLGAWN YLW LLVL+    +TLA G++ F    D
Sbjct:   70 NWIWNSILIAVLVSVGKLAIAVPAGFAFSHMQFRGRDALFWVIVATMTFPTIIGIVPLYIGISLIGWYDTQTAVIVPSIAYIGFYVFFMRQIFRSLPNAMFEAARLDNAGPFKQLFEIAIPNVLPAIASLSIISFLGAWNIYLWALLVLDTPEKRTLAIGLKSFVVIDD 238          
BLAST of mRNA_P-wetherbeei_contig57608.1.1 vs. uniprot
Match: A0A7V9KIJ0_9CHLR (Carbohydrate ABC transporter permease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9KIJ0_9CHLR)

HSP 1 Score: 166 bits (420), Expect = 6.330e-48
Identity = 81/168 (48.21%), Postives = 123/168 (73.21%), Query Frame = 1
Query:    4 WLWNSFGIAVLTTLGKLAISVPAAFAFSRLKFRGDKLLFAMVLATMIVPGVVTVVPNYVVVSRLGWLDTWTGVIIPSLPATAFYVFLLRQSMLTLPQDLIDAAKLDGSSTMQMLWQIVMPNVRPAIAVVMILSFLGAWNQYLWPLLVLNDFVSKTLATGMQFFTSNQD 507
            W+ N+  IAV TTL +L I++PAA+AF+RL+F    +L  +V+ TMI+PGVVT++PNY++++RLGW++T  GV++P   ++AF++FL RQ +L +P DL DAA+LDG+  ++ML  I +P + PAI  ++ LSFL +WN YLWPLLVL    ++TLA G+  +  + D
Sbjct:   88 WIRNTVLIAVATTLLRLLITIPAAYAFARLRFPRKGVLLGIVIGTMIIPGVVTLIPNYLLIARLGWINTLQGVVVPMAASSAFFIFLFRQHILQIPIDLYDAAELDGAGHLRMLRDITVPLIVPAIGAMIALSFLWSWNAYLWPLLVLPTLDAQTLAVGLGTYAGDPD 255          
BLAST of mRNA_P-wetherbeei_contig57608.1.1 vs. uniprot
Match: A0A3N1KUL0_9PROT (Multiple sugar transport system permease protein/sn-glycerol 3-phosphate transport system permease protein n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1KUL0_9PROT)

HSP 1 Score: 164 bits (416), Expect = 2.040e-47
Identity = 81/169 (47.93%), Postives = 115/169 (68.05%), Query Frame = 1
Query:    1 HWLWNSFGIAVLTTLGKLAISVPAAFAFSRLKFRGDKLLFAMVLATMIVPGVVTVVPNYVVVSRLGWLDTWTGVIIPSLPATAFYVFLLRQSMLTLPQDLIDAAKLDGSSTMQMLWQIVMPNVRPAIAVVMILSFLGAWNQYLWPLLVLNDFVSKTLATGMQFFTSNQD 507
            HWL NS   A     GK+ IS+PAAFAF+  +FRG   LFA+++ TM +P V+T++P Y+ V +L   +T TGVI+PS+    F +F LRQS   +P +L++AA +DG+  ++ L  IV+PN  PAIA + +LSFL AWN YLWP L+LND   KTL+ G++ F +NQ+
Sbjct:   79 HWLVNSMITATAIAAGKMLISIPAAFAFAHFRFRGRDWLFALIVGTMTIPYVITLIPTYIAVVKLDLYNTLTGVIVPSIAFCGFAIFFLRQSFKVVPTELLEAAVIDGAGPLRTLVSIVVPNTLPAIASLTVLSFLSAWNLYLWPHLILNDAEMKTLSIGLKLFATNQE 247          
BLAST of mRNA_P-wetherbeei_contig57608.1.1 vs. uniprot
Match: A0A2E8PEM0_9RHOB (Carbohydrate ABC transporter permease n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A2E8PEM0_9RHOB)

HSP 1 Score: 163 bits (412), Expect = 5.580e-47
Identity = 79/163 (48.47%), Postives = 116/163 (71.17%), Query Frame = 1
Query:    4 WLWNSFGIAVLTTLGKLAISVPAAFAFSRLKFRGDKLLFAMVLATMIVPGVVTVVPNYVVVSRLGWLDTWTGVIIPSLPATAFYVFLLRQSMLTLPQDLIDAAKLDGSSTMQMLWQIVMPNVRPAIAVVMILSFLGAWNQYLWPLLVLNDFVSKTLATGMQFF 492
            +LWNS    VL   G+L I++ AA+AF+R  FRG   LFAMVL  M++P ++T++P Y++++RLGW DTW  +IIP+L A  F VFLLRQ ML  P+DL+DAA++DG+   + LW++V+PN+ PA++ + I+ F+  WN+Y WPLLV     S+TL  G++ F
Sbjct:   67 YLWNSVATTVLRVSGQLVIALLAAWAFARFAFRGRDTLFAMVLGAMMIPHLLTMIPVYILMARLGWFDTWAALIIPNL-AMPFAVFLLRQHMLAFPRDLLDAAEMDGAGPWRALWRVVVPNLAPALSALTIILFVECWNEYFWPLLVTETEASRTLQMGLREF 228          
BLAST of mRNA_P-wetherbeei_contig57608.1.1 vs. uniprot
Match: A0A1Z8V0C0_9PROT (ABC transmembrane type-1 domain-containing protein n=1 Tax=Candidatus Puniceispirillum sp. TMED52 TaxID=1986639 RepID=A0A1Z8V0C0_9PROT)

HSP 1 Score: 162 bits (409), Expect = 1.580e-46
Identity = 76/168 (45.24%), Postives = 119/168 (70.83%), Query Frame = 1
Query:    4 WLWNSFGIAVLTTLGKLAISVPAAFAFSRLKFRGDKLLFAMVLATMIVPGVVTVVPNYVVVSRLGWLDTWTGVIIPSLPATAFYVFLLRQSMLTLPQDLIDAAKLDGSSTMQMLWQIVMPNVRPAIAVVMILSFLGAWNQYLWPLLVLNDFVSKTLATGMQFFTSNQD 507
            +L NS    +   +G++ I +  A+AF+R +FRG   LF +VLA M++P  +T++PNY++++ LGW DTWTG+++P+L A  F VFLLRQ ML  P++  DAA++DG+S ++ LW +V+PN+RPAIA + I+ F+ +WN+Y WPLL+     S+TL  G++ F  N+D
Sbjct:   67 FLLNSTATTLYRVIGQILICIATAYAFARFEFRGKNFLFILVLAAMMIPPQLTMIPNYILIANLGWFDTWTGLVVPNL-AMPFGVFLLRQHMLGFPKEFFDAAEIDGASELEKLWYVVLPNLRPAIAALTIIVFIESWNEYFWPLLISETTASETLQIGLRRFM-NED 232          
BLAST of mRNA_P-wetherbeei_contig57608.1.1 vs. uniprot
Match: A0A1F3BDD7_9BACT (Sugar ABC transporter permease n=1 Tax=Armatimonadetes bacterium RBG_16_58_9 TaxID=1797287 RepID=A0A1F3BDD7_9BACT)

HSP 1 Score: 160 bits (406), Expect = 4.110e-46
Identity = 82/164 (50.00%), Postives = 114/164 (69.51%), Query Frame = 1
Query:    1 HWLWNSFGIAVLTTLGKLAISVPAAFAFSRLKFRGDKLLFAMVLATMIVPGVVTVVPNYVVVSRLGWLDTWTGVIIPSLPATAFYVFLLRQSMLTLPQDLIDAAKLDGSSTMQMLWQIVMPNVRPAIAVVMILSFLGAWNQYLWPLLVLNDFVSKTLATGMQFF 492
             + WNS  +AV  T+G +  S  AAFAF+RL+FRG   LF + LAT++VPG VT++P ++VV  LGW+DT+ G+I+P    +AF  FLLRQ  LT+P+DL DAA +DG S  ++ WQ++MP VRPA+A + I SFLG+WN  LWPL+V      +T+  G+ FF
Sbjct:   64 RFYWNSVVVAVGVTVGSVFTSSLAAFAFARLQFRGRDSLFLLYLATLMVPGQVTMIPAFIVVRYLGWIDTYRGLILPGC-FSAFGTFLLRQFFLTIPRDLEDAATVDGCSPFRVYWQVIMPLVRPALAALAIFSFLGSWNNLLWPLVVTTKMEMRTIPVGLTFF 226          
BLAST of mRNA_P-wetherbeei_contig57608.1.1 vs. uniprot
Match: A0A2E6Y9W2_9HYPH (ABC transporter permease n=1 Tax=Stappia sp. TaxID=1870903 RepID=A0A2E6Y9W2_9HYPH)

HSP 1 Score: 160 bits (405), Expect = 7.220e-46
Identity = 83/168 (49.40%), Postives = 112/168 (66.67%), Query Frame = 1
Query:    4 WLWNSFGIAVLTTLGKLAISVPAAFAFSRLKFRGDKLLFAMVLATMIVPGVVTVVPNYVVVSRLGWLDTWTGVIIPSLPATAFYVFLLRQSMLTLPQDLIDAAKLDGSSTMQMLWQIVMPNVRPAIAVVMILSFLGAWNQYLWPLLVLNDFVSKTLATGMQFFTSNQD 507
            WL NS  IA L TLGKLAI+ PA FAF+ L+F G   +F  ++ATM  P  + +VP YV VS  GW DT  GVI+PS+    FYVF  RQ+  TLP ++ +AA+LD +   +  +QI +PN+ PA+A + ++SF+GAWN YLW LLVL+    +TLA G++ FTS  D
Sbjct:   71 WLVNSVVIASLVTLGKLAIAFPAGFAFAHLRFPGRDWMFRGIIATMAFPVAIGIVPLYVGVSLTGWYDTRAGVIVPSIAYVGFYVFFARQAFKTLPGEMFEAARLDNAGPFRQFFQIALPNIMPAVASLAVVSFMGAWNIYLWALLVLDSPEKRTLAIGLKAFTSLDD 238          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57608.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V9AKC9_9CHLR8.890e-9381.44Carbohydrate ABC transporter permease n=1 Tax=Chlo... [more]
UPI001555BE0B1.840e-5151.19carbohydrate ABC transporter permease n=1 Tax=Pseu... [more]
A0A5P2ZS29_9RHOB1.150e-4950.60Lactose transport system permease protein LacG n=2... [more]
A0A7W6E729_9RHOB7.070e-4949.70Multiple sugar transport system permease protein/s... [more]
A0A7V9KIJ0_9CHLR6.330e-4848.21Carbohydrate ABC transporter permease n=1 Tax=Chlo... [more]
A0A3N1KUL0_9PROT2.040e-4747.93Multiple sugar transport system permease protein/s... [more]
A0A2E8PEM0_9RHOB5.580e-4748.47Carbohydrate ABC transporter permease n=2 Tax=Rhod... [more]
A0A1Z8V0C0_9PROT1.580e-4645.24ABC transmembrane type-1 domain-containing protein... [more]
A0A1F3BDD7_9BACT4.110e-4650.00Sugar ABC transporter permease n=1 Tax=Armatimonad... [more]
A0A2E6Y9W2_9HYPH7.220e-4649.40ABC transporter permease n=1 Tax=Stappia sp. TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57608contigP-wetherbeei_contig57608:3..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1532558.JL39_27795
PFAMsBPD_transp_1
Model size507
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.37e-45
EggNOG OGsCOG0395@1|root,COG0395@2|Bacteria,1MUWS@1224|Proteobacteria,2TS8M@28211|Alphaproteobacteria
DescriptionABC-type sugar transport system, permease component
Cds size507
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.403947-CDS-P-wetherbeei_contig57608:2..5091683186854.403947-CDS-P-wetherbeei_contig57608:2..509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57608 3..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57608.1.1prot_P-wetherbeei_contig57608.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57608 3..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57608.1.1

>prot_P-wetherbeei_contig57608.1.1 ID=prot_P-wetherbeei_contig57608.1.1|Name=mRNA_P-wetherbeei_contig57608.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
HWLWNSFGIAVLTTLGKLAISVPAAFAFSRLKFRGDKLLFAMVLATMIVP
GVVTVVPNYVVVSRLGWLDTWTGVIIPSLPATAFYVFLLRQSMLTLPQDL
IDAAKLDGSSTMQMLWQIVMPNVRPAIAVVMILSFLGAWNQYLWPLLVLN
DFVSKTLATGMQFFTSNQD
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mRNA from alignment at P-wetherbeei_contig57608:3..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57608.1.1 ID=mRNA_P-wetherbeei_contig57608.1.1|Name=mRNA_P-wetherbeei_contig57608.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57608:3..509- (Phaeothamnion wetherbeei SAG_119_79)
CACTGGCTCTGGAACAGCTTCGGCATTGCCGTGCTCACGACCCTCGGCAA GCTGGCGATCAGCGTCCCGGCGGCCTTCGCCTTCTCCCGGCTGAAGTTCC GGGGCGACAAGCTGCTCTTCGCGATGGTGCTGGCGACGATGATCGTGCCG GGCGTCGTCACCGTCGTCCCGAACTACGTGGTGGTCTCCCGCCTCGGCTG GCTGGACACCTGGACCGGCGTCATCATCCCATCGCTGCCGGCCACGGCGT TCTACGTCTTCCTGCTGCGCCAGTCGATGCTGACCCTGCCGCAGGACCTG ATCGACGCCGCGAAGCTGGACGGCTCCAGCACGATGCAGATGCTCTGGCA GATCGTGATGCCGAACGTGCGGCCTGCCATCGCGGTGGTGATGATCCTCT CGTTCCTCGGCGCCTGGAACCAGTACCTGTGGCCGCTGCTGGTGCTGAAC GACTTCGTATCGAAGACGCTGGCCACCGGCATGCAGTTCTTCACCTCGAA CCAGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57608:3..509-

>mRNA_P-wetherbeei_contig57608.1.1 ID=mRNA_P-wetherbeei_contig57608.1.1|Name=mRNA_P-wetherbeei_contig57608.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57608:3..509- (Phaeothamnion wetherbeei SAG_119_79)
CACTGGCTCTGGAACAGCTTCGGCATTGCCGTGCTCACGACCCTCGGCAA
GCTGGCGATCAGCGTCCCGGCGGCCTTCGCCTTCTCCCGGCTGAAGTTCC
GGGGCGACAAGCTGCTCTTCGCGATGGTGCTGGCGACGATGATCGTGCCG
GGCGTCGTCACCGTCGTCCCGAACTACGTGGTGGTCTCCCGCCTCGGCTG
GCTGGACACCTGGACCGGCGTCATCATCCCATCGCTGCCGGCCACGGCGT
TCTACGTCTTCCTGCTGCGCCAGTCGATGCTGACCCTGCCGCAGGACCTG
ATCGACGCCGCGAAGCTGGACGGCTCCAGCACGATGCAGATGCTCTGGCA
GATCGTGATGCCGAACGTGCGGCCTGCCATCGCGGTGGTGATGATCCTCT
CGTTCCTCGGCGCCTGGAACCAGTACCTGTGGCCGCTGCTGGTGCTGAAC
GACTTCGTATCGAAGACGCTGGCCACCGGCATGCAGTTCTTCACCTCGAA
CCAGGAT
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