mRNA_P-wetherbeei_contig57556.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57556.1.1
Unique NamemRNA_P-wetherbeei_contig57556.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57556.1.1 vs. uniprot
Match: A0A3D5DGH9_9GAMM (Thioredoxin n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DGH9_9GAMM)

HSP 1 Score: 150 bits (380), Expect = 1.350e-45
Identity = 69/90 (76.67%), Postives = 79/90 (87.78%), Query Frame = 1
Query:    1 MNEHMIHVTDDSFDSDVLKSDQPVLVDYWAEWCGPCKMIAPILEEVSSEYSARLKIAKLDVDQNQATSMKYGIRGIPTLMLFKEGNIVAT 270
            M+ +++HVTDDSFD DVL+S  PVLVDYWAEWCGPCKMIAPILEE+S +Y  +L IAKLDVD NQ TS KYGIRG+PTLMLFKEGN+VAT
Sbjct:    1 MSGNIMHVTDDSFDDDVLQSTNPVLVDYWAEWCGPCKMIAPILEEISGDYDKQLTIAKLDVDSNQGTSAKYGIRGVPTLMLFKEGNVVAT 90          
BLAST of mRNA_P-wetherbeei_contig57556.1.1 vs. uniprot
Match: A0A523NRY8_9PROT (Thioredoxin n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NRY8_9PROT)

HSP 1 Score: 149 bits (376), Expect = 5.480e-45
Identity = 67/90 (74.44%), Postives = 81/90 (90.00%), Query Frame = 1
Query:    1 MNEHMIHVTDDSFDSDVLKSDQPVLVDYWAEWCGPCKMIAPILEEVSSEYSARLKIAKLDVDQNQATSMKYGIRGIPTLMLFKEGNIVAT 270
            M++ +++VTDDSFD+DVL+S +PVLVDYWAEWCGPCKMIAPILEEVS +Y  +L +AKLD+D NQ TSMKYGIRG+PTLMLFKEG +VAT
Sbjct:    1 MSDKIVYVTDDSFDTDVLQSTKPVLVDYWAEWCGPCKMIAPILEEVSGDYDDKLTVAKLDIDANQGTSMKYGIRGVPTLMLFKEGAVVAT 90          
BLAST of mRNA_P-wetherbeei_contig57556.1.1 vs. uniprot
Match: A0A5C7ES85_9PROT (Thioredoxin n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A5C7ES85_9PROT)

HSP 1 Score: 149 bits (375), Expect = 7.790e-45
Identity = 67/90 (74.44%), Postives = 82/90 (91.11%), Query Frame = 1
Query:    1 MNEHMIHVTDDSFDSDVLKSDQPVLVDYWAEWCGPCKMIAPILEEVSSEYSARLKIAKLDVDQNQATSMKYGIRGIPTLMLFKEGNIVAT 270
            M+EH+ +VTDDSF+++VLKSD PVLVDYWAEWCGPCKMIAPIL+EV+ EY+ RLK+AKL++D+NQAT  +YGIRGIPTLMLFK GN+ AT
Sbjct:    1 MSEHIHYVTDDSFEAEVLKSDIPVLVDYWAEWCGPCKMIAPILDEVAQEYAGRLKVAKLNIDENQATPPRYGIRGIPTLMLFKNGNVEAT 90          
BLAST of mRNA_P-wetherbeei_contig57556.1.1 vs. uniprot
Match: A0A5C1E9H0_9RHOO (Thioredoxin n=2 Tax=Rhodocyclales TaxID=206389 RepID=A0A5C1E9H0_9RHOO)

HSP 1 Score: 148 bits (373), Expect = 1.570e-44
Identity = 65/90 (72.22%), Postives = 83/90 (92.22%), Query Frame = 1
Query:    1 MNEHMIHVTDDSFDSDVLKSDQPVLVDYWAEWCGPCKMIAPILEEVSSEYSARLKIAKLDVDQNQATSMKYGIRGIPTLMLFKEGNIVAT 270
            M+EH+ +V+DDSFD++VL+S QPVLVDYWAEWCGPCKMIAPIL+EV+SEY+ +LK+AK+++D+NQAT  KYGIRGIPTLM+FK GN+ AT
Sbjct:    1 MSEHIHYVSDDSFDAEVLQSQQPVLVDYWAEWCGPCKMIAPILDEVASEYAGKLKVAKVNIDENQATPAKYGIRGIPTLMIFKNGNVEAT 90          
BLAST of mRNA_P-wetherbeei_contig57556.1.1 vs. uniprot
Match: A0A1Z9UHM5_9GAMM (Thioredoxin n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UHM5_9GAMM)

HSP 1 Score: 146 bits (369), Expect = 6.400e-44
Identity = 68/90 (75.56%), Postives = 80/90 (88.89%), Query Frame = 1
Query:    1 MNEHMIHVTDDSFDSDVLKSDQPVLVDYWAEWCGPCKMIAPILEEVSSEYSARLKIAKLDVDQNQATSMKYGIRGIPTLMLFKEGNIVAT 270
            M+E +IHVTDDSF+SDVL+S+ PVLVDYWAEWCGPCKMIAPIL+EV+SEY+ + KIAKLDVDQN  T+ KYGIR IP LMLFK G+I+AT
Sbjct:    1 MSEQLIHVTDDSFESDVLQSNAPVLVDYWAEWCGPCKMIAPILDEVASEYADKXKIAKLDVDQNAXTAQKYGIRSIPCLMLFKXGDIIAT 90          
BLAST of mRNA_P-wetherbeei_contig57556.1.1 vs. uniprot
Match: UPI0019148077 (thioredoxin TrxA n=1 Tax=Rhodocyclus purpureus TaxID=1067 RepID=UPI0019148077)

HSP 1 Score: 146 bits (369), Expect = 6.400e-44
Identity = 64/90 (71.11%), Postives = 80/90 (88.89%), Query Frame = 1
Query:    1 MNEHMIHVTDDSFDSDVLKSDQPVLVDYWAEWCGPCKMIAPILEEVSSEYSARLKIAKLDVDQNQATSMKYGIRGIPTLMLFKEGNIVAT 270
            M+EH++HVTDDSF++DVL+S QPVLVDYWA+WCGPCKMIAPIL+EV+ +Y+ RLK+AKL++D NQ T   YGIRGIPTLM+FK GN+ AT
Sbjct:    1 MSEHILHVTDDSFETDVLQSTQPVLVDYWADWCGPCKMIAPILDEVAKDYAGRLKVAKLNIDDNQKTPAGYGIRGIPTLMIFKNGNVEAT 90          
BLAST of mRNA_P-wetherbeei_contig57556.1.1 vs. uniprot
Match: A0A1D9LLY2_9NEIS (Thioredoxin n=7 Tax=Chromobacterium TaxID=535 RepID=A0A1D9LLY2_9NEIS)

HSP 1 Score: 146 bits (368), Expect = 9.090e-44
Identity = 65/90 (72.22%), Postives = 80/90 (88.89%), Query Frame = 1
Query:    1 MNEHMIHVTDDSFDSDVLKSDQPVLVDYWAEWCGPCKMIAPILEEVSSEYSARLKIAKLDVDQNQATSMKYGIRGIPTLMLFKEGNIVAT 270
            M++ ++HVTDDSF++DVLKSD PVLVDYWAEWCGPCKMIAPIL+EV+ EY  +LKIAKL++DQN+ T  K+GIRGIPTLMLFK+G + AT
Sbjct:    1 MSDLILHVTDDSFENDVLKSDSPVLVDYWAEWCGPCKMIAPILDEVAKEYEGKLKIAKLNIDQNEQTPPKFGIRGIPTLMLFKDGQVAAT 90          
BLAST of mRNA_P-wetherbeei_contig57556.1.1 vs. uniprot
Match: A0A3N5WGA5_9PROT (Thioredoxin n=8 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A3N5WGA5_9PROT)

HSP 1 Score: 145 bits (367), Expect = 1.290e-43
Identity = 66/90 (73.33%), Postives = 79/90 (87.78%), Query Frame = 1
Query:    1 MNEHMIHVTDDSFDSDVLKSDQPVLVDYWAEWCGPCKMIAPILEEVSSEYSARLKIAKLDVDQNQATSMKYGIRGIPTLMLFKEGNIVAT 270
            M+EH+ HVTDDSFD +VL+S  PVLVDYWAEWCGPCKMIAPIL+EV+ EYS +LK+AKL++D NQAT  KYGIRGIPTLM+FK G++ AT
Sbjct:    1 MSEHIHHVTDDSFDPEVLQSATPVLVDYWAEWCGPCKMIAPILDEVAKEYSGKLKVAKLNIDDNQATPPKYGIRGIPTLMIFKNGSVEAT 90          
BLAST of mRNA_P-wetherbeei_contig57556.1.1 vs. uniprot
Match: A0A1G0G2K3_9GAMM (Thioredoxin n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_35_23 TaxID=1798274 RepID=A0A1G0G2K3_9GAMM)

HSP 1 Score: 145 bits (367), Expect = 1.290e-43
Identity = 61/90 (67.78%), Postives = 81/90 (90.00%), Query Frame = 1
Query:    1 MNEHMIHVTDDSFDSDVLKSDQPVLVDYWAEWCGPCKMIAPILEEVSSEYSARLKIAKLDVDQNQATSMKYGIRGIPTLMLFKEGNIVAT 270
            M+EH++HVTDDSFDS+VLKSDQPVL+D+WAEWCGPCKMIAPIL+E+++EY  +LK+AKL++D N  T +KYG+RGIPTL++ K+G + AT
Sbjct:    1 MSEHILHVTDDSFDSEVLKSDQPVLLDFWAEWCGPCKMIAPILDEIANEYKGKLKVAKLNIDNNPQTPVKYGVRGIPTLLILKDGEVQAT 90          
BLAST of mRNA_P-wetherbeei_contig57556.1.1 vs. uniprot
Match: A0A3B7A4F7_9RHOO (Thioredoxin n=28 Tax=cellular organisms TaxID=131567 RepID=A0A3B7A4F7_9RHOO)

HSP 1 Score: 145 bits (366), Expect = 1.830e-43
Identity = 64/90 (71.11%), Postives = 82/90 (91.11%), Query Frame = 1
Query:    1 MNEHMIHVTDDSFDSDVLKSDQPVLVDYWAEWCGPCKMIAPILEEVSSEYSARLKIAKLDVDQNQATSMKYGIRGIPTLMLFKEGNIVAT 270
            M+EH+ +VTDD+F+++VL+S QPVLVDYWAEWCGPCKMIAPIL+EV++EY+ +LK+AK+++D NQAT  KYGIRGIPTLM+FK GNI AT
Sbjct:    1 MSEHIHYVTDDTFEAEVLQSQQPVLVDYWAEWCGPCKMIAPILDEVANEYAGKLKVAKVNIDDNQATPAKYGIRGIPTLMIFKNGNIEAT 90          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57556.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DGH9_9GAMM1.350e-4576.67Thioredoxin n=1 Tax=Gammaproteobacteria bacterium ... [more]
A0A523NRY8_9PROT5.480e-4574.44Thioredoxin n=1 Tax=Proteobacteria bacterium TaxID... [more]
A0A5C7ES85_9PROT7.790e-4574.44Thioredoxin n=2 Tax=Proteobacteria TaxID=1224 RepI... [more]
A0A5C1E9H0_9RHOO1.570e-4472.22Thioredoxin n=2 Tax=Rhodocyclales TaxID=206389 Rep... [more]
A0A1Z9UHM5_9GAMM6.400e-4475.56Thioredoxin n=2 Tax=Gammaproteobacteria TaxID=1236... [more]
UPI00191480776.400e-4471.11thioredoxin TrxA n=1 Tax=Rhodocyclus purpureus Tax... [more]
A0A1D9LLY2_9NEIS9.090e-4472.22Thioredoxin n=7 Tax=Chromobacterium TaxID=535 RepI... [more]
A0A3N5WGA5_9PROT1.290e-4373.33Thioredoxin n=8 Tax=unclassified Betaproteobacteri... [more]
A0A1G0G2K3_9GAMM1.290e-4367.78Thioredoxin n=1 Tax=Gammaproteobacteria bacterium ... [more]
A0A3B7A4F7_9RHOO1.830e-4371.11Thioredoxin n=28 Tax=cellular organisms TaxID=1315... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57556contigP-wetherbeei_contig57556:4..273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog640081.Dsui_3217
Preferred nametrxA
PFAMsThioredoxin
Model size270
Max annot lvl206389|Rhodocyclales
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.2e-45
EggNOG OGsCOG3118@1|root,COG3118@2|Bacteria,1MZBB@1224|Proteobacteria,2VSHX@28216|Betaproteobacteria,2KWAV@206389|Rhodocyclales
DescriptionBelongs to the thioredoxin family
Cds size270
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.4299502-CDS-P-wetherbeei_contig57556:3..2731683186853.4299502-CDS-P-wetherbeei_contig57556:3..273Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57556 4..273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57556.1.1prot_P-wetherbeei_contig57556.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57556 4..273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57556.1.1

>prot_P-wetherbeei_contig57556.1.1 ID=prot_P-wetherbeei_contig57556.1.1|Name=mRNA_P-wetherbeei_contig57556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MNEHMIHVTDDSFDSDVLKSDQPVLVDYWAEWCGPCKMIAPILEEVSSEY
SARLKIAKLDVDQNQATSMKYGIRGIPTLMLFKEGNIVAT
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mRNA from alignment at P-wetherbeei_contig57556:4..273-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57556.1.1 ID=mRNA_P-wetherbeei_contig57556.1.1|Name=mRNA_P-wetherbeei_contig57556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig57556:4..273- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATGAACACATGATCCACGTTACCGACGACTCCTTCGATTCGGACGT ACTGAAATCCGACCAGCCGGTCCTCGTTGATTACTGGGCCGAGTGGTGCG GACCGTGCAAAATGATTGCGCCTATCCTCGAAGAGGTGTCGTCGGAATAT TCCGCGCGTCTCAAGATCGCCAAACTCGATGTCGATCAGAATCAGGCCAC TTCGATGAAATATGGCATCCGGGGCATTCCGACCTTGATGCTGTTCAAGG AAGGCAACATCGTTGCCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57556:4..273-

>mRNA_P-wetherbeei_contig57556.1.1 ID=mRNA_P-wetherbeei_contig57556.1.1|Name=mRNA_P-wetherbeei_contig57556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig57556:4..273- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATGAACACATGATCCACGTTACCGACGACTCCTTCGATTCGGACGT
ACTGAAATCCGACCAGCCGGTCCTCGTTGATTACTGGGCCGAGTGGTGCG
GACCGTGCAAAATGATTGCGCCTATCCTCGAAGAGGTGTCGTCGGAATAT
TCCGCGCGTCTCAAGATCGCCAAACTCGATGTCGATCAGAATCAGGCCAC
TTCGATGAAATATGGCATCCGGGGCATTCCGACCTTGATGCTGTTCAAGG
AAGGCAACATCGTTGCCACC
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