mRNA_P-wetherbeei_contig57520.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57520.1.1
Unique NamemRNA_P-wetherbeei_contig57520.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57520.1.1 vs. uniprot
Match: A0A1F4FSI7_9PROT (MFS domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FSI7_9PROT)

HSP 1 Score: 171 bits (433), Expect = 3.410e-49
Identity = 95/171 (55.56%), Postives = 122/171 (71.35%), Query Frame = 1
Query:    4 FTVGVLMSLYALLPMLMSVTAGRLIDRIGPRVPLLWGNGLLLLGVMLPFLVPGLPTLFVAATLIGSGFMLSHMISNNLVGAYGKPEDRAANFSWLSLGFSVSGSLGPLVAGFSIDGVGEVRAFAIMAAFAAVALGVTFWRRKDLVRHET--PKHRPSGHSVMDLVRIRDLR 510
            FTVGVLM+L+A+LPML+SV+AGRLIDR GPR PLL    LL LG  LPFL P + +L+VA TL G+ FM  H+  N++ GA+G PE RA NFSWL+LGFS+S S+GPLVAG++IDG+G   AF ++A F A+   + + RR+ L R E   P  R     V+DL+RIR LR
Sbjct:   15 FTVGVLMALFAVLPMLLSVSAGRLIDRAGPRTPLLAALALLALGTALPFLFPRIESLYVATTLAGTAFMYVHIAMNSVFGAHGTPEQRAMNFSWLALGFSISNSIGPLVAGYAIDGLGHAAAFLVLAVFPAIGFVLVWLRRRPLPRPEAGAPGKRTR---VLDLLRIRGLR 182          
BLAST of mRNA_P-wetherbeei_contig57520.1.1 vs. uniprot
Match: A0A1F4AZX6_9PROT (MFS domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4AZX6_9PROT)

HSP 1 Score: 167 bits (422), Expect = 2.820e-47
Identity = 90/170 (52.94%), Postives = 114/170 (67.06%), Query Frame = 1
Query:    1 PFTVGVLMSLYALLPMLMSVTAGRLIDRIGPRVPLLWGNGLLLLGVMLPFLVPGLPTLFVAATLIGSGFMLSHMISNNLVGAYGKPEDRAANFSWLSLGFSVSGSLGPLVAGFSIDGVGEVRAFAIMAAFAAVALGVTFWRRKDLVRHETPKHRPSGHSVMDLVRIRDLR 510
            P T+GVLM+LYALLPML++VTAGRLIDR+G   PL W    L LG+ LP+L P +P L++AATLIG+ FM+ H+  N+ VGA G P DRA NFSW SL FS+ G  GPL+AGFSID +G   AF I+AAF   AL +  + R  L     P+     H ++DL+R   LR
Sbjct:   35 PLTIGVLMALYALLPMLLAVTAGRLIDRVGTLRPLAWSGVALALGLALPWLWPAMPGLYLAATLIGTAFMVVHVSLNHAVGALGTPADRAVNFSWFSLAFSIGGFCGPLLAGFSIDSIGHRSAFLILAAFPVAALLIVHFNRGALPHRHGPRADSRDHRIVDLLREPRLR 204          
BLAST of mRNA_P-wetherbeei_contig57520.1.1 vs. uniprot
Match: A0A1F4CEL6_9PROT (MFS domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 TaxID=1797499 RepID=A0A1F4CEL6_9PROT)

HSP 1 Score: 162 bits (409), Expect = 2.260e-45
Identity = 91/169 (53.85%), Postives = 118/169 (69.82%), Query Frame = 1
Query:    4 FTVGVLMSLYALLPMLMSVTAGRLIDRIGPRVPLLWGNGLLLLGVMLPFLVPGLPTLFVAATLIGSGFMLSHMISNNLVGAYGKPEDRAANFSWLSLGFSVSGSLGPLVAGFSIDGVGEVRAFAIMAAFAAVALGVTFWRRKDLVRHETPKHRPSGHSVMDLVRIRDLR 510
            FTVG LMS YALLPML +++AGRL+DR G R PL   +  + LGV+LPF+ P L TL+VA+TLIG+GFM+ H+  + +VGA G+ EDRAANFSWL+LGFSVSGS+GPLV GF+ID +G VR F ++  F    L + +  R  L + +  K       VMDL+R R LR
Sbjct:   36 FTVGALMSSYALLPMLFALSAGRLVDRSGARWPLFGASVAVALGVLLPFVWPRLQTLYVASTLIGTGFMVFHVAISQVVGAIGRAEDRAANFSWLALGFSVSGSIGPLVTGFAIDAIGHVRTFLLLFLFPLPPLLLLWLNRPALPQAKERKADAGESRVMDLLRSRALR 204          
BLAST of mRNA_P-wetherbeei_contig57520.1.1 vs. uniprot
Match: A0A537FII5_9PROT (MFS transporter n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537FII5_9PROT)

HSP 1 Score: 155 bits (393), Expect = 7.140e-45
Identity = 85/156 (54.49%), Postives = 109/156 (69.87%), Query Frame = 1
Query:    1 PFTVGVLMSLYALLPMLMSVTAGRLIDRIGPRVPLLWGNGLLLLGVMLPFLVPGLPTLFVAATLIGSGFMLSHMISNNLVGAYGKPEDRAANFSWLSLGFSVSGSLGPLVAGFSIDGVGEVRAFAIMAAFAAVALGVTFWRRKDLVRHET---PKH 459
            P TVG LMSL+ALLPML+SV +GRLIDR GPR PL      L  G  LPFL P L  LF+++TL+G  FM  H+  N+++GA+G PE RA NFSWL+LGFS SGSLGPLVAG++I+G G   AF +++ F  +ALG+   RR+ L R +    P+H
Sbjct:   47 PLTVGALMSLFALLPMLLSVASGRLIDRAGPRRPLAAAFAALACGTALPFLFPSLQILFLSSTLLGLAFMCVHIGMNSVIGAHGAPEQRALNFSWLALGFSFSGSLGPLVAGYAIEGFGHAGAFLVLSFFPLLALGLLLARRRALPRPDRSSGPRH 202          
BLAST of mRNA_P-wetherbeei_contig57520.1.1 vs. uniprot
Match: A0A537DR74_9PROT (MFS transporter n=5 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537DR74_9PROT)

HSP 1 Score: 160 bits (405), Expect = 1.050e-44
Identity = 89/170 (52.35%), Postives = 114/170 (67.06%), Query Frame = 1
Query:    1 PFTVGVLMSLYALLPMLMSVTAGRLIDRIGPRVPLLWGNGLLLLGVMLPFLVPGLPTLFVAATLIGSGFMLSHMISNNLVGAYGKPEDRAANFSWLSLGFSVSGSLGPLVAGFSIDGVGEVRAFAIMAAFAAVALGVTFWRRKDLVRHETPKHRPSGHSVMDLVRIRDLR 510
            P TVG LMSL+ALLPML+SV +GRLIDR GPR PL      L  G  LPFL P L  LF+++TL+G  FM  H+  N+++GA+G PE RA NFSWL+LGFS SGSLGPLVAG++I+G G   AF +++ F  +ALG+   RR+ L R   P        ++DL R+  LR
Sbjct:   47 PLTVGALMSLFALLPMLLSVASGRLIDRAGPRRPLAAAFAALACGTALPFLFPSLQILFLSSTLLGLAFMCVHIGMNSVIGAHGAPEQRALNFSWLALGFSFSGSLGPLVAGYAIEGFGHAGAFLVLSFFPLLALGLLLARRRALPR---PDRSSGPRHLLDLFRVPGLR 213          
BLAST of mRNA_P-wetherbeei_contig57520.1.1 vs. uniprot
Match: A0A521YKQ3_9PROT (MFS transporter n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YKQ3_9PROT)

HSP 1 Score: 156 bits (395), Expect = 1.590e-43
Identity = 89/169 (52.66%), Postives = 118/169 (69.82%), Query Frame = 1
Query:    7 TVGVLMSLYALLPMLMSVTAGRLIDRIGPRVPLLWGNGLLLLGVMLPFLVPGLPTLFVAATLIGSGFMLSHMISNNLVGAYGKPEDRAANFSWLSLGFSVSGSLGPLVAGFSIDGVGEVRAFAIMAAFAAVALGVTFWRRKDLVR-HETPKHRPSGHSVMDLVRIRDLR 510
            TVGVLM+L+A+LPML+SV+AGRL+DRIGPR PLL    +L  G+ LPF  P L TL+ +  LIG+ FM  H+  N++ GA+G PE RA NFSWL+LGFS+S S+GPLVAGF+ID  G   A   +A F  +A  + + RR+ L R H   +  P+  SV+DL+RI +LR
Sbjct:   16 TVGVLMALFAVLPMLLSVSAGRLVDRIGPRRPLLVAFAVLAGGMALPFAFPRLATLYASCVLIGTSFMFLHISMNSVFGAHGTPERRAVNFSWLALGFSISNSVGPLVAGFAIDHFGHAAAMLGLAVFPLIAFTLVWLRRRPLPRPHRVVQ--PARASVLDLLRIPELR 182          
BLAST of mRNA_P-wetherbeei_contig57520.1.1 vs. uniprot
Match: A0A521V060_9PROT (MFS transporter (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521V060_9PROT)

HSP 1 Score: 152 bits (385), Expect = 2.170e-43
Identity = 84/170 (49.41%), Postives = 108/170 (63.53%), Query Frame = 1
Query:    1 PFTVGVLMSLYALLPMLMSVTAGRLIDRIGPRVPLLWGNGLLLLGVMLPFLVPGLPTLFVAATLIGSGFMLSHMISNNLVGAYGKPEDRAANFSWLSLGFSVSGSLGPLVAGFSIDGVGEVRAFAIMAAFAAVALGVTFWRRKDLVRHETPKHRPSGHSVMDLVRIRDLR 510
            PFT+G+LM+LYALLPML++V+AGRLIDR+G   PL W    L+ G+ LP+  P LP LFVAATLIG+ FM+ H+  N+ VG+ G P DRA NFSW SL FS+SG  GPL+ G SID  G    F ++AAF A  L + +  R  +     P+       V DL+    LR
Sbjct:   35 PFTIGLLMALYALLPMLLAVSAGRLIDRVGTLRPLAWSGLALVAGLALPYAWPALPGLFVAATLIGTAFMVVHVSLNHAVGSMGTPADRAVNFSWFSLAFSISGFCGPLLTGLSIDAAGHRPTFLLLAAFPAAGLMLLYLYRHAMPHRHGPRVEGGERRVADLLHEPRLR 204          
BLAST of mRNA_P-wetherbeei_contig57520.1.1 vs. uniprot
Match: A0A522VKH5_9PROT (MFS transporter n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VKH5_9PROT)

HSP 1 Score: 154 bits (389), Expect = 2.090e-42
Identity = 84/170 (49.41%), Postives = 109/170 (64.12%), Query Frame = 1
Query:    1 PFTVGVLMSLYALLPMLMSVTAGRLIDRIGPRVPLLWGNGLLLLGVMLPFLVPGLPTLFVAATLIGSGFMLSHMISNNLVGAYGKPEDRAANFSWLSLGFSVSGSLGPLVAGFSIDGVGEVRAFAIMAAFAAVALGVTFWRRKDLVRHETPKHRPSGHSVMDLVRIRDLR 510
            PFT+G+LM+LYALLPML++V+AGRLIDR+G   PL W    L+ G+ LP+  P LP LFVAATLIG+ FM+ H+  N+ VG+ G P DRA NFSW SL FS+SG  GPL+ G SID  G    F ++AAF A  L + +  R  +     P+       + DL+R   LR
Sbjct:   35 PFTIGLLMALYALLPMLLAVSAGRLIDRVGTLRPLAWSGLALVAGLALPYAWPALPGLFVAATLIGTAFMVVHVSLNHAVGSMGTPADRAVNFSWFSLAFSISGFCGPLLTGLSIDAAGHRPTFLLLAAFPAAGLMLLYLYRHAMPHRHGPRVEGGQRRIADLLREPRLR 204          
BLAST of mRNA_P-wetherbeei_contig57520.1.1 vs. uniprot
Match: A0A1F4F783_9PROT (MFS domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4F783_9PROT)

HSP 1 Score: 153 bits (387), Expect = 4.320e-42
Identity = 85/170 (50.00%), Postives = 107/170 (62.94%), Query Frame = 1
Query:    1 PFTVGVLMSLYALLPMLMSVTAGRLIDRIGPRVPLLWGNGLLLLGVMLPFLVPGLPTLFVAATLIGSGFMLSHMISNNLVGAYGKPEDRAANFSWLSLGFSVSGSLGPLVAGFSIDGVGEVRAFAIMAAFAAVALGVTFWRRKDLVRHETPKHRPSGHSVMDLVRIRDLR 510
            PFT+GVLM+LY+LLPML++V+AGRLIDR+G   PL W    L+ G+ LPF  P L  L VAATLIG+ FM+ H+  N+ VG+ G P DRA NFSW SL FS+ G  GPL+AGFSID  G    F ++AAF A  L + +  R  L          S   + DL+R   LR
Sbjct:   35 PFTIGVLMALYSLLPMLLAVSAGRLIDRVGTLRPLAWSGLALVAGLALPFFRPALDGLIVAATLIGTAFMVVHLSLNHAVGSMGSPADRAVNFSWFSLAFSIGGFCGPLLAGFSIDAAGHRPTFLLLAAFPAAGLVLLYAVRHSLPHRHAQPAESSDRRITDLLREPRLR 204          
BLAST of mRNA_P-wetherbeei_contig57520.1.1 vs. uniprot
Match: A0A521W2H5_9PROT (MFS transporter n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521W2H5_9PROT)

HSP 1 Score: 153 bits (386), Expect = 6.740e-42
Identity = 84/169 (49.70%), Postives = 110/169 (65.09%), Query Frame = 1
Query:    4 FTVGVLMSLYALLPMLMSVTAGRLIDRIGPRVPLLWGNGLLLLGVMLPFLVPGLPTLFVAATLIGSGFMLSHMISNNLVGAYGKPEDRAANFSWLSLGFSVSGSLGPLVAGFSIDGVGEVRAFAIMAAFAAVALGVTFWRRKDLVRHETPKHRPSGHSVMDLVRIRDLR 510
            FT+G+LM+LYALLPML++V+AGRLIDR+G   PL W   LL+ G+ LP+  P L  LFVAATLIG+ FM+ H+  N+ VG+ G P DRA NFSW SL FSVSG  GPL+ G SID  G    F ++AAF A  L + ++ R  +     P+       ++DL+R   LR
Sbjct:   42 FTIGLLMALYALLPMLLAVSAGRLIDRVGTLRPLAWSGLLLVAGLSLPYAWPSLAVLFVAATLIGTSFMVVHVSLNHAVGSMGTPADRAVNFSWFSLAFSVSGFCGPLLTGLSIDAAGHRPTFLLLAAFPAAGLMLLYFYRHAMPHRLGPRSEGGERRIIDLLREPRLR 210          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57520.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4FSI7_9PROT3.410e-4955.56MFS domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A1F4AZX6_9PROT2.820e-4752.94MFS domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A1F4CEL6_9PROT2.260e-4553.85MFS domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A537FII5_9PROT7.140e-4554.49MFS transporter n=1 Tax=Betaproteobacteria bacteri... [more]
A0A537DR74_9PROT1.050e-4452.35MFS transporter n=5 Tax=Betaproteobacteria bacteri... [more]
A0A521YKQ3_9PROT1.590e-4352.66MFS transporter n=1 Tax=Betaproteobacteria bacteri... [more]
A0A521V060_9PROT2.170e-4349.41MFS transporter (Fragment) n=1 Tax=Betaproteobacte... [more]
A0A522VKH5_9PROT2.090e-4249.41MFS transporter n=1 Tax=Betaproteobacteria bacteri... [more]
A0A1F4F783_9PROT4.320e-4250.00MFS domain-containing protein n=2 Tax=unclassified... [more]
A0A521W2H5_9PROT6.740e-4249.70MFS transporter n=1 Tax=Betaproteobacteria bacteri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57520contigP-wetherbeei_contig57520:2..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1095769.CAHF01000013_gene3301
PFAMsMFS_1
Model size510
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.64e-27
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1R3WC@1224|Proteobacteria,2VKT9@28216|Betaproteobacteria
Descriptionmajor facilitator superfamily
Cds size489
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.0433817-CDS-P-wetherbeei_contig57520:1..4901683186853.0433817-CDS-P-wetherbeei_contig57520:1..490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57520 2..490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.0568542-UTR-P-wetherbeei_contig57520:490..5111683186853.0568542-UTR-P-wetherbeei_contig57520:490..511Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57520 491..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57520.1.1prot_P-wetherbeei_contig57520.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57520 2..490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57520.1.1

>prot_P-wetherbeei_contig57520.1.1 ID=prot_P-wetherbeei_contig57520.1.1|Name=mRNA_P-wetherbeei_contig57520.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MSLYALLPMLMSVTAGRLIDRIGPRVPLLWGNGLLLLGVMLPFLVPGLPT
LFVAATLIGSGFMLSHMISNNLVGAYGKPEDRAANFSWLSLGFSVSGSLG
PLVAGFSIDGVGEVRAFAIMAAFAAVALGVTFWRRKDLVRHETPKHRPSG
HSVMDLVRIRDLR
back to top

mRNA from alignment at P-wetherbeei_contig57520:2..511-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57520.1.1 ID=mRNA_P-wetherbeei_contig57520.1.1|Name=mRNA_P-wetherbeei_contig57520.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57520:2..511- (Phaeothamnion wetherbeei SAG_119_79)
CCGTTCACGGTGGGCGTGCTGATGTCGCTCTACGCGCTGCTGCCGATGCT GATGTCGGTCACCGCAGGGCGCCTGATCGACCGCATCGGGCCGCGCGTGC CGCTGCTGTGGGGCAACGGGCTCCTCCTCCTCGGGGTAATGCTGCCCTTC CTGGTCCCGGGCCTGCCGACGCTCTTCGTCGCCGCGACCCTGATCGGCTC GGGCTTCATGCTCTCGCACATGATCTCCAACAACCTCGTCGGCGCATACG GCAAACCGGAAGACCGCGCGGCAAACTTCTCGTGGCTCTCGCTCGGGTTC TCGGTGTCGGGGTCGCTCGGCCCGCTGGTGGCCGGGTTCTCGATCGACGG GGTGGGCGAGGTCCGCGCCTTCGCGATCATGGCCGCGTTCGCGGCGGTGG CGCTCGGCGTGACGTTCTGGCGCCGCAAGGACCTCGTGCGGCACGAGACG CCGAAGCACCGCCCCTCGGGCCACAGCGTGATGGACCTGGTGCGCATCCG CGACTTGCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig57520:2..511-

>mRNA_P-wetherbeei_contig57520.1.1 ID=mRNA_P-wetherbeei_contig57520.1.1|Name=mRNA_P-wetherbeei_contig57520.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig57520:2..511- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCTCTACGCGCTGCTGCCGATGCTGATGTCGGTCACCGCAGGGCG
CCTGATCGACCGCATCGGGCCGCGCGTGCCGCTGCTGTGGGGCAACGGGC
TCCTCCTCCTCGGGGTAATGCTGCCCTTCCTGGTCCCGGGCCTGCCGACG
CTCTTCGTCGCCGCGACCCTGATCGGCTCGGGCTTCATGCTCTCGCACAT
GATCTCCAACAACCTCGTCGGCGCATACGGCAAACCGGAAGACCGCGCGG
CAAACTTCTCGTGGCTCTCGCTCGGGTTCTCGGTGTCGGGGTCGCTCGGC
CCGCTGGTGGCCGGGTTCTCGATCGACGGGGTGGGCGAGGTCCGCGCCTT
CGCGATCATGGCCGCGTTCGCGGCGGTGGCGCTCGGCGTGACGTTCTGGC
GCCGCAAGGACCTCGTGCGGCACGAGACGCCGAAGCACCGCCCCTCGGGC
CACAGCGTGATGGACCTGGTGCGCATCCGCGACTTGCGG
back to top