mRNA_P-wetherbeei_contig57325.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57325.1.1
Unique NamemRNA_P-wetherbeei_contig57325.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57325.1.1 vs. uniprot
Match: A0A7C4TVX2_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TVX2_9HYPH)

HSP 1 Score: 130 bits (328), Expect = 5.180e-33
Identity = 72/164 (43.90%), Postives = 105/164 (64.02%), Query Frame = 1
Query:    7 ETDPLLIVLRGVPTWVSLSKGSTIDDEIWLLPAKDARELAVSIVEAVDGIADIRVQIAHLDGRILAETRLNVRALKPLRPSPLVAAVPEAGEQT---------LLRMLARGELLLDTGELEAARLLLRTAAQGGSVAAALKLAQTYDPGEMRRLGMAETSADPA 471
            ++D LL+V+RGVP  ++LS+GS I +EIWL+PA  +R++  +I EAV G  D+  ++  LDGR+L++ R  + A      +P + A P A E T         L R+ ARGELLLDTG++ AAR++L  AA+ GS  AAL+L +TYDP  +RR G +  + D A
Sbjct:  289 DSDALLLVMRGVPDEIALSQGSAIGNEIWLIPAHMSRDIEFTIAEAVTGTFDVTAELVTLDGRLLSQARTQIVA------APTLVAAPAASEPTPPEKLDAGALRRLTARGELLLDTGDISAARIVLERAAEAGSAIAALRLGETYDPVYLRRSGTSAEAGDEA 446          
BLAST of mRNA_P-wetherbeei_contig57325.1.1 vs. uniprot
Match: A0A1I7M4C6_9BRAD (Uncharacterized protein n=6 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1I7M4C6_9BRAD)

HSP 1 Score: 67.0 bits (162), Expect = 4.380e-10
Identity = 55/172 (31.98%), Postives = 88/172 (51.16%), Query Frame = 1
Query:   22 LIVLRGVPTWVSLSKGSTIDDEIWLLPAKDARELAVSIVEAVDGIADIRVQIAHL---DGRILA--ETRLN--------------VRALKPLR-----PSPLVAAVPEAGEQTLLRMLARGELLLDTGELEAARLLLRTAAQGGSVAAALKLAQTYDPGEMRRLGMAETSAD 465
            ++ + G+P    L+ G  + +E W +PA +    AVS++   DG     V +A L   +G +L    +RL+              V A+ P R     P+P   AV     + +  ++ RG+ LL +G++ AARLLL  AA+GG   AAL +A+TYDP  +++LG +   AD
Sbjct:  182 IVAINGLPADARLTSGKRVANE-WRVPASEVS--AVSVISP-DGFVGQMVAMAELRDSNGAVLVVGSSRLSWKPAASVAPQPSTAVTAVPPTRSLVASPTPQTDAVRSLDPKEISGLVKRGQDLLTSGDVSAARLLLLRAAEGGDARAALLVARTYDPNVLKQLGASGPLAD 349          
BLAST of mRNA_P-wetherbeei_contig57325.1.1 vs. uniprot
Match: A0A6N6SVB9_9HYPH (Sel1 repeat family protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SVB9_9HYPH)

HSP 1 Score: 65.1 bits (157), Expect = 1.500e-9
Identity = 50/166 (30.12%), Postives = 75/166 (45.18%), Query Frame = 1
Query:   31 LRGVPTWVSLSKGSTIDDEIWLLPAKDARELAVSIVEAVDGIADIRVQIAHLDGRILAETRLNV-----------------RALKPLRPSPLVA------AVPEAGE------QTLLRMLARGELLLDTGELEAARLLLRTAAQGGSVAAALKLAQTYDPGEMRRL 441
            LRG+P+ VSL++G  I    W +P      L   I   V G +++ + +  +DG +LAE R  +                  A  P  P P+ A      AVP A E        + +++ +G+  L  G +  AR   + AA  G    A+KLA T+DPGE+ RL
Sbjct:   93 LRGLPSTVSLTEGYAIGPGSWAVPLFSLPALKAVIPAGVSGRSELTISLVAVDGTLLAEARTALVVGSAAMMAPGEGQQPPSANVPSPPQPVPATRPERYAVPRAPELPPDEKARVEKLVGQGDRFLSQGNIAIARQFYQRAADAGYAPGAVKLAATFDPGELDRL 258          
BLAST of mRNA_P-wetherbeei_contig57325.1.1 vs. uniprot
Match: A0A3S0E1Y2_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3S0E1Y2_9HYPH)

HSP 1 Score: 63.9 bits (154), Expect = 3.600e-9
Identity = 46/169 (27.22%), Postives = 75/169 (44.38%), Query Frame = 1
Query:   31 LRGVPTWVSLSKGSTIDDEIWLLPAKDARELAVSIVEAVDGIADIRVQIAHLDGRILAETR--LNVRALKP--------------------LRPSPLVAAVPEAGEQTLLRMLARGELLLDTGELEAARLLLRTAAQGGSVAAALKLAQTYDPGEMRRLGMAETSADPA 471
            +RG+P   SLS G  +   +W +P +    L  ++ + + G A + VQ+   DG +LAET   L +   KP                    +  +P    +     Q   +++ +G+  L++G +  AR   + AA  G    AL+LA T+DP E+ RLG       PA
Sbjct:   89 IRGLPEAGSLSDGYAVALGVWAVPLRALASLKATLPQGLSGRAPLTVQLVSADGVVLAETTTLLTLDIAKPXXXXXXXXXXXXXXXXXXXXVEAAPPRPRLSAEERQRAEKLVVQGDRYLESGNVAIARQFFQRAADAGLALGALRLAATFDPNELSRLGTQGVVPSPA 257          
BLAST of mRNA_P-wetherbeei_contig57325.1.1 vs. uniprot
Match: UPI001FE58183 (hypothetical protein n=2 Tax=Bradyrhizobium liaoningense TaxID=43992 RepID=UPI001FE58183)

HSP 1 Score: 61.2 bits (147), Expect = 4.620e-8
Identity = 50/172 (29.07%), Postives = 85/172 (49.42%), Query Frame = 1
Query:   22 LIVLRGVPTWVSLSKGSTIDDEIWLLPAKDARELAVSIVEAVDGIADIRVQIAHL---DGRILA--ETRLNVRALKPLRPSPLVAAVPEAGEQTLLR-------------------MLARGELLLDTGELEAARLLLRTAAQGGSVAAALKLAQTYDPGEMRRLGMAETSAD 465
            ++ + G+P    L+ G  + +E W +PA +    AVS++   DG     V +A L   +G +L    +RL+ +    + P P  A  P    + ++                    ++ RG+ LL +G++ AARLLL  AA+GG   AAL +A+T+DP  +++LG +   AD
Sbjct:  184 IVAINGLPADARLTSGKRVVNE-WRVPASEIS--AVSVIPP-DGFVGQMVAMAELRDSNGAVLVVGSSRLSWKPAVTVAPQPSTAVTPVPPARAVVASPPQQTDAVRNLDPREISGLVKRGQDLLASGDVSAARLLLLRAAEGGDAHAALLVARTFDPAVLKQLGASGPLAD 351          
BLAST of mRNA_P-wetherbeei_contig57325.1.1 vs. uniprot
Match: A0A176Z5L7_9BRAD (Uncharacterized protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A176Z5L7_9BRAD)

HSP 1 Score: 60.5 bits (145), Expect = 4.900e-8
Identity = 52/172 (30.23%), Postives = 85/172 (49.42%), Query Frame = 1
Query:   22 LIVLRGVPTWVSLSKGSTIDDEIWLLPAKDARELAVSIVEAVDGIADIRVQIAHL---DGRILA--ETRLNVRALKPLRPSPLVA-------------------AVPEAGEQTLLRMLARGELLLDTGELEAARLLLRTAAQGGSVAAALKLAQTYDPGEMRRLGMAETSAD 465
            ++ + G+P    L+ G  + +E W +PA +    AVS++    G A   V +A L   +G +L    +RL+ +    + P P  A                   AV     + +  ++ RG+ LL +G++ AARLLL  AA+GG   AAL +A+TYDP  +++LG +   AD
Sbjct:   51 IVAINGLPGDARLTSGKRVANE-WRVPASEIS--AVSVIPP-HGFAGQMVAMAELRDSNGAVLVVGSSRLSWKPAVTVAPQPSAAVXXXXXXXXXXXXXXXQTDAVRNLDPKEISGLVKRGQDLLTSGDVSAARLLLLRAAEGGDARAALLVARTYDPTVLKQLGASGPLAD 218          
BLAST of mRNA_P-wetherbeei_contig57325.1.1 vs. uniprot
Match: Q07GV6_RHOP5 (Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) TaxID=316055 RepID=Q07GV6_RHOP5)

HSP 1 Score: 58.5 bits (140), Expect = 4.110e-7
Identity = 47/172 (27.33%), Postives = 77/172 (44.77%), Query Frame = 1
Query:   10 TDPLLIVLRGVPTWVSLSKGSTIDDEIWLLPAKDARELAVSIVEAVDGIADIRVQIAHLDGRILAETRLNVRALKPLRPSPLVA-------AVPEAGEQ------TLLR-----MLARGELLLDTGELEAARLLLRTAAQGGSVAAALKLAQTYDPGEMRRLGMAETSADPA 471
            +D   +++ G+     LS G  I    W +   D  +  V       G+ +I   +  +D +++ +  L +   +P   +P +        A P  G        TL R     +L RG   L+ G++ AARL+LR AA GG   AAL L +T+DP  + +L +   S +PA
Sbjct:  207 SDDSAVLISGLAVGARLSAGQEIGSGTWRVRLTDIGQARVIPPTDFIGVMNITAALVGVDAKVIDKGLLRIDWARPAAAAPALERSAPSRDASPAGGPPQPPELLTLDRGEIDGLLKRGRDFLENGDIAAARLVLRRAANGGDAQAALLLGKTFDPKVIEQLHVIGVSPNPA 378          
BLAST of mRNA_P-wetherbeei_contig57325.1.1 vs. uniprot
Match: A0A7C4TST2_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TST2_9HYPH)

HSP 1 Score: 55.8 bits (133), Expect = 2.490e-6
Identity = 48/166 (28.92%), Postives = 74/166 (44.58%), Query Frame = 1
Query:   31 LRGVPTWVSLSKGSTIDDEIWLLPAKDARELAVSIVEAVDGIADIRVQIAHLDGRILAETRLNV-------------------------RA---LKPLRPSPLVAAVPEAGEQTLLRML-ARGELLLDTGELEAARLLLRTAAQGGSVAAALKLAQTYDPGEMRRL 441
            +RG+P    LS+G  I   +W +P     +L + +   + G   + + +  +DG++ AET + +                         RA    KP  P P+ A  P A +    + L A+G   L +G + AAR+  R AA+ G   AA  LA TYDP E+ RL
Sbjct:   62 IRGLPQGAMLSEGFGIAAGLWAVPLNGLPKLRMRLGAPLAGETRLTLSLVTVDGKVHAETTVALLPTADTSRSAGPPRETASTGEGPTPRASGDAKPAAPPPVGA--PAAADLAQAKALHAQGNQKLASGNVAAARMFYRRAAEAGFADAAFALAATYDPEELSRL 225          
BLAST of mRNA_P-wetherbeei_contig57325.1.1 vs. uniprot
Match: A0A182D3L0_BLAVI (Uncharacterized protein n=2 Tax=Blastochloris viridis TaxID=1079 RepID=A0A182D3L0_BLAVI)

HSP 1 Score: 52.8 bits (125), Expect = 3.670e-5
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 1
Query:  244 PSPLVAAVP--EAGEQTLLRMLARGELLLDTGELEAARLLLRTAAQGGSVAAALKLAQTYDPGEMRRLGMAETSAD 465
            P P+VAA P      + +  +LARG   +  G++ AARLLLR AA  G  +AAL L  T+DP  +R L +  T+ D
Sbjct:  209 PEPIVAAPPGPPLDREEIATLLARGRGFIANGDIAAARLLLRRAADAGDASAALMLGSTFDPTTLRPLKVIGTAPD 284          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57325.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7C4TVX2_9HYPH5.180e-3343.90Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A1I7M4C6_9BRAD4.380e-1031.98Uncharacterized protein n=6 Tax=Bradyrhizobiaceae ... [more]
A0A6N6SVB9_9HYPH1.500e-930.12Sel1 repeat family protein n=1 Tax=Hyphomicrobiace... [more]
A0A3S0E1Y2_9HYPH3.600e-927.22Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
UPI001FE581834.620e-829.07hypothetical protein n=2 Tax=Bradyrhizobium liaoni... [more]
A0A176Z5L7_9BRAD4.900e-830.23Uncharacterized protein n=4 Tax=Bradyrhizobium Tax... [more]
Q07GV6_RHOP54.110e-727.33Uncharacterized protein n=1 Tax=Rhodopseudomonas p... [more]
A0A7C4TST2_9HYPH2.490e-628.92Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A182D3L0_BLAVI3.670e-542.11Uncharacterized protein n=2 Tax=Blastochloris viri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57325contigP-wetherbeei_contig57325:3..473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog936455.KI421499_gene4691
Model size471
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.98e-11
EggNOG OGsCOG0790@1|root,COG0790@2|Bacteria,1R5MB@1224|Proteobacteria,2TV77@28211|Alphaproteobacteria,3JXDS@41294|Bradyrhizobiaceae
DescriptionCOG0790 FOG TPR repeat, SEL1 subfamily
Cds size471
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.4970632-CDS-P-wetherbeei_contig57325:2..4731683186850.4970632-CDS-P-wetherbeei_contig57325:2..473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57325 3..473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57325.1.1prot_P-wetherbeei_contig57325.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57325 3..473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57325.1.1

>prot_P-wetherbeei_contig57325.1.1 ID=prot_P-wetherbeei_contig57325.1.1|Name=mRNA_P-wetherbeei_contig57325.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MVETDPLLIVLRGVPTWVSLSKGSTIDDEIWLLPAKDARELAVSIVEAVD
GIADIRVQIAHLDGRILAETRLNVRALKPLRPSPLVAAVPEAGEQTLLRM
LARGELLLDTGELEAARLLLRTAAQGGSVAAALKLAQTYDPGEMRRLGMA
ETSADPA
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mRNA from alignment at P-wetherbeei_contig57325:3..473-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57325.1.1 ID=mRNA_P-wetherbeei_contig57325.1.1|Name=mRNA_P-wetherbeei_contig57325.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig57325:3..473- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGAGACCGATCCACTGTTGATCGTTCTACGTGGCGTACCCACGTG GGTGAGTCTGTCCAAAGGCAGCACTATCGACGACGAGATCTGGCTGTTGC CGGCGAAGGATGCCCGCGAACTGGCTGTGAGCATCGTCGAAGCTGTCGAT GGAATTGCTGATATCAGGGTTCAGATCGCTCATCTCGATGGGCGGATTCT CGCTGAAACGCGATTGAATGTTCGTGCGCTGAAGCCATTGCGGCCCTCGC CACTCGTCGCCGCAGTGCCCGAGGCTGGCGAACAAACGCTGCTGCGAATG CTGGCGCGGGGCGAATTGCTGCTCGATACCGGTGAGTTGGAAGCGGCACG GCTACTCCTGCGGACGGCGGCGCAAGGCGGGAGCGTGGCGGCAGCGCTGA AGCTCGCGCAGACTTACGATCCCGGGGAGATGCGTCGTCTTGGAATGGCG GAGACCTCAGCGGATCCTGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57325:3..473-

>mRNA_P-wetherbeei_contig57325.1.1 ID=mRNA_P-wetherbeei_contig57325.1.1|Name=mRNA_P-wetherbeei_contig57325.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig57325:3..473- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGAGACCGATCCACTGTTGATCGTTCTACGTGGCGTACCCACGTG
GGTGAGTCTGTCCAAAGGCAGCACTATCGACGACGAGATCTGGCTGTTGC
CGGCGAAGGATGCCCGCGAACTGGCTGTGAGCATCGTCGAAGCTGTCGAT
GGAATTGCTGATATCAGGGTTCAGATCGCTCATCTCGATGGGCGGATTCT
CGCTGAAACGCGATTGAATGTTCGTGCGCTGAAGCCATTGCGGCCCTCGC
CACTCGTCGCCGCAGTGCCCGAGGCTGGCGAACAAACGCTGCTGCGAATG
CTGGCGCGGGGCGAATTGCTGCTCGATACCGGTGAGTTGGAAGCGGCACG
GCTACTCCTGCGGACGGCGGCGCAAGGCGGGAGCGTGGCGGCAGCGCTGA
AGCTCGCGCAGACTTACGATCCCGGGGAGATGCGTCGTCTTGGAATGGCG
GAGACCTCAGCGGATCCTGCT
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