mRNA_P-wetherbeei_contig5727.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5727.1.1
Unique NamemRNA_P-wetherbeei_contig5727.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5727.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5727contigP-wetherbeei_contig5727:2..3334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3182
Hectar predicted targeting categorymitochondrion
Exons2
Cds size2298
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.4814854-UTR-P-wetherbeei_contig5727:1..5471683186849.4814854-UTR-P-wetherbeei_contig5727:1..547Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5727 2..547 +
1683186849.5120893-UTR-P-wetherbeei_contig5727:2996..33341683186849.5120893-UTR-P-wetherbeei_contig5727:2996..3334Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5727 2997..3334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.4919822-CDS-P-wetherbeei_contig5727:547..6461683186849.4919822-CDS-P-wetherbeei_contig5727:547..646Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5727 548..646 +
1683186849.502413-CDS-P-wetherbeei_contig5727:797..29961683186849.502413-CDS-P-wetherbeei_contig5727:797..2996Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5727 798..2996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5727.1.1prot_P-wetherbeei_contig5727.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5727 548..2996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5727.1.1

>prot_P-wetherbeei_contig5727.1.1 ID=prot_P-wetherbeei_contig5727.1.1|Name=mRNA_P-wetherbeei_contig5727.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=766bp
MRLRGRFRRRVLGERSHRCSRRKSKAAPLSYCGPPASPLPRFAAENWEDG
GPLQFRMHRLPLAPSILRVIGAGPFGASAEDEADASATGGTAGVAASPVA
NGGGSEAAAGGSAGTDTAPAVVSILALTSTGRLFAFAAPTSADACAACEL
EAGRGGVGVRGGSSSSGGGRLIRVDAERRIKALLARLWEVGSRRQRLVAE
ATALDARALGLRHAAEAMPSLRAAAAAGVDGGGSSRSGGGGSNSGVGSVC
GISARVSSTEYGGGGRGSGGVLFGLSVTFRAALRVPSSMAACFTARGRWT
ISLHVVLAGDGVAGCGGGGGGGDSGDSGGGAAWTASAAVPPLALSDGKHW
GVEMTIDLPSLSPVSASCFLEYRLQAEERCGSGSPDGIGGGGGASSSDDG
CLKRAGSSTHGNRHGRETGTTTEDLSGVSVSLCRRRFDLFDFAAPVDGAF
PASMAAVRGAAAAAAAAGEGLGLAGGPAAVVRWLFGEGSQQEKDEGLAAA
AAAAAAAATAAAAGGAAPARGGGRPPLMRASGASFVLQAVLPAAMGQGAL
LRRLLADNREEVGATASWSRGDRDAAMRFGDRVVLVRIRPASSQAAISGF
GGLGGSSSGGGSGGSGGGGTSDEMVDLHVSCSHAEAAPLVREALLHRLTI
LCHSTAAADLAAGAAMAAAASLVRNLHVSIEAIASAAREAQSIVDATDAL
AAVASAVDNPSSASMHLPSSSMRLPQLPQLAMAASKDVARLAATMRDEYA
SVRERGQRDGGNIFS*
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mRNA from alignment at P-wetherbeei_contig5727:2..3334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5727.1.1 ID=mRNA_P-wetherbeei_contig5727.1.1|Name=mRNA_P-wetherbeei_contig5727.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3333bp|location=Sequence derived from alignment at P-wetherbeei_contig5727:2..3334+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGCGGCAGGCGCGGGTGATCAACGTAGAGCCGCTCCTCTTCGCGGCCC
TGTTTGGCCGGCAAGTGCCGCCGCCGGGGGGCGACGGTGGCAGCGACGGT
GGTTTAGTGGTCGTGGCCGGCGATTCAAGAGGAGAGGTGCGATGGTGCGC
TCTGCCAGCGCTTGCCGCCGCAGAAGAAGGAGTGAACTTCGGCGGGGGCG
GCAGCGCGGGGGGCGCCCTCGCTCGACTGGGTAGCGCCGTCGTGGCGATC
CTTCCGTGGGCAGCGGCCCCGGGAGGAGCGGGCGCACCGCAAAGCGGCGG
CTTGACGGCGTTCGGCCTTCTTTTAGTCGCTTCCGATGGCGCCATCATGG
CACTGATGCACACGATATCCGTTCCCGCCTGCAGCGGGAGCAATGACGGC
AGCGGTGGCAGCGGCGGCGGCGACGGCGCGGCCACTGCCGACTGTGGCAA
TTGTTGCTGCAGCAGCCGTCTCAAGCCGTCGCGCGTCGGGGAGAAGCGCA
ATGCCGAGGGTGCAGCGGCCGCTGCCGCTGTCAGTCGGGAGGATCGATGC
GGTTGCGGGGGCGCTTTCGACGCCGGGTGCTGGGGGAGCGGAGCCACCGC
TGCAGCCGCCGGAAGAGCAAGGCTGCGCCGCTTTCGTATTGCGGTCCGCC
GGCCGGTGGCGTCGGCGTGCGTCGCGGGGCGCTTGCTCATCGTCACCGCT
CCCAGCGGCAGCTGCTTCGCCAGCGCCTTTCCCGCCGCGCCGCCGCCGCT
GCCGCTGCTGCTGCCCCCGCCGCCACCGCTGCTGCCATCGCCGACGCCGC
CGGCTTCGCCGCTGCCGCGTTTCGCGGCCGAAAACTGGGAGGACGGCGGG
CCGCTGCAGTTCCGCATGCACCGGCTGCCGCTGGCGCCGTCCATCCTGAG
GGTGATTGGAGCTGGACCGTTTGGAGCCTCTGCGGAGGATGAAGCAGATG
CCTCAGCTACTGGAGGGACGGCGGGAGTTGCGGCGTCTCCTGTGGCAAAC
GGAGGCGGCAGCGAGGCGGCGGCTGGGGGGTCGGCTGGTACTGACACAGC
GCCCGCCGTCGTGAGCATTCTAGCACTCACCTCAACCGGCCGGCTCTTCG
CCTTTGCGGCACCAACGTCTGCCGACGCCTGCGCCGCCTGCGAGCTGGAG
GCCGGTCGTGGCGGCGTCGGCGTCAGGGGCGGCAGCAGCAGCAGTGGTGG
CGGCCGACTCATTCGTGTCGACGCCGAGCGGCGAATCAAAGCGCTTCTGG
CGCGGCTTTGGGAGGTCGGCTCCCGCCGCCAGCGGCTGGTCGCTGAGGCC
ACAGCCCTCGACGCCCGTGCTCTCGGTCTGCGGCACGCTGCCGAAGCGAT
GCCGTCCTTGCGCGCCGCGGCGGCAGCCGGCGTGGATGGCGGAGGGAGCA
GCAGGAGCGGCGGCGGCGGTAGCAACAGCGGCGTTGGGTCCGTTTGCGGC
ATTTCGGCGCGAGTTTCGTCAACGGAGTATGGCGGCGGCGGAAGAGGCAG
CGGTGGCGTGCTGTTTGGACTTTCGGTAACGTTCCGCGCCGCGCTTCGGG
TCCCGTCGAGCATGGCCGCGTGCTTCACCGCCAGAGGCCGTTGGACGATT
TCTCTGCACGTCGTCTTGGCGGGTGATGGGGTTGCTGGCTGTGGCGGCGG
CGGCGGCGGCGGCGACAGCGGCGACAGCGGGGGTGGCGCGGCATGGACAG
CATCTGCTGCCGTGCCGCCGCTGGCGCTCTCGGACGGCAAGCATTGGGGA
GTGGAGATGACCATTGACCTGCCGTCGCTGTCTCCGGTCAGCGCTTCCTG
CTTTCTGGAGTACCGTCTGCAGGCTGAAGAAAGATGCGGCAGCGGCTCCC
CTGATGGGATCGGCGGTGGCGGCGGTGCATCGAGCAGCGATGACGGTTGC
CTTAAGCGCGCCGGTAGCAGCACTCACGGCAACCGTCACGGCAGGGAAAC
CGGCACAACGACAGAGGATCTCTCCGGCGTCAGCGTTTCGCTCTGCAGGC
GCCGCTTCGATTTGTTCGACTTTGCTGCTCCGGTCGACGGCGCTTTTCCG
GCCAGCATGGCGGCGGTGCGGGGCGCCGCCGCCGCGGCCGCCGCCGCCGG
CGAAGGTCTCGGCTTGGCTGGCGGCCCAGCCGCCGTCGTTCGATGGCTTT
TCGGGGAAGGCTCGCAGCAGGAAAAAGACGAGGGCCTGGCGGCGGCGGCA
GCGGCGGCTGCGGCGGCAGCGACGGCTGCGGCGGCTGGGGGAGCAGCGCC
GGCGCGCGGAGGAGGCCGGCCGCCGCTGATGAGGGCGTCGGGGGCCTCAT
TCGTCCTGCAGGCAGTGCTGCCGGCTGCGATGGGCCAGGGCGCTTTGCTG
CGGCGACTTTTGGCCGACAACAGAGAGGAAGTCGGGGCGACGGCGTCCTG
GAGCCGCGGCGACCGCGATGCGGCAATGCGATTCGGCGACCGAGTCGTGT
TGGTGCGCATCCGGCCCGCATCGAGCCAAGCCGCAATTTCGGGCTTCGGC
GGTTTAGGCGGCAGCAGCAGCGGCGGCGGCAGCGGCGGCAGCGGCGGCGG
CGGCACTAGCGACGAGATGGTTGATCTTCACGTGTCCTGCTCGCACGCCG
AGGCAGCACCACTCGTGCGAGAAGCGCTGCTGCACCGGCTCACGATACTG
TGTCATTCCACTGCAGCAGCCGACTTGGCAGCGGGAGCGGCAATGGCTGC
GGCAGCGAGCCTGGTACGGAACCTGCATGTGTCGATTGAAGCTATCGCTT
CGGCGGCGCGGGAAGCGCAGTCCATCGTGGACGCAACTGATGCTCTTGCC
GCAGTCGCTTCTGCGGTCGATAACCCATCGTCCGCGTCCATGCACCTGCC
GTCCTCGTCGATGCGGCTGCCGCAGCTGCCGCAATTAGCGATGGCGGCTT
CGAAGGATGTAGCTCGGCTTGCCGCGACCATGCGTGACGAGTATGCGTCG
GTGCGGGAGCGCGGGCAGCGGGATGGAGGCAACATATTCTCATGAGTTCT
TAGATTGGCCAGTCACGAAATTGAGGCGTAGACCAAAGGCCAAAAGCCAC
GGATTGTTTTCCTTGGTTCTATCGACCGCCTTGCCCCCTTTGATAGTCGT
CATCGTCCTTTGCTTCCCAGTTCACGGAAGACCAACCATTAGTAAAAGAG
CAAAATGGGTGCGCTGAGGCTCTTTGGGACCGTCGGCTTTCCCTCTCGGG
GATGTGGACGGATGTTGTCGCGGGATGTGGCGGTTACGCTGGCGAAACGG
CTGAAGGTTGCCCTTCGCATCCACAAGTCTCTGCCGCTCATACAAAACAC
AAACCCAGCCAGCAAGCAACTGCTGAAAGCAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5727:2..3334+

>mRNA_P-wetherbeei_contig5727.1.1 ID=mRNA_P-wetherbeei_contig5727.1.1|Name=mRNA_P-wetherbeei_contig5727.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2298bp|location=Sequence derived from alignment at P-wetherbeei_contig5727:2..3334+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGTTGCGGGGGCGCTTTCGACGCCGGGTGCTGGGGGAGCGGAGCCA
CCGCTGCAGCCGCCGGAAGAGCAAGGCTGCGCCGCTTTCGTATTGCGGTC
CGCCGGCTTCGCCGCTGCCGCGTTTCGCGGCCGAAAACTGGGAGGACGGC
GGGCCGCTGCAGTTCCGCATGCACCGGCTGCCGCTGGCGCCGTCCATCCT
GAGGGTGATTGGAGCTGGACCGTTTGGAGCCTCTGCGGAGGATGAAGCAG
ATGCCTCAGCTACTGGAGGGACGGCGGGAGTTGCGGCGTCTCCTGTGGCA
AACGGAGGCGGCAGCGAGGCGGCGGCTGGGGGGTCGGCTGGTACTGACAC
AGCGCCCGCCGTCGTGAGCATTCTAGCACTCACCTCAACCGGCCGGCTCT
TCGCCTTTGCGGCACCAACGTCTGCCGACGCCTGCGCCGCCTGCGAGCTG
GAGGCCGGTCGTGGCGGCGTCGGCGTCAGGGGCGGCAGCAGCAGCAGTGG
TGGCGGCCGACTCATTCGTGTCGACGCCGAGCGGCGAATCAAAGCGCTTC
TGGCGCGGCTTTGGGAGGTCGGCTCCCGCCGCCAGCGGCTGGTCGCTGAG
GCCACAGCCCTCGACGCCCGTGCTCTCGGTCTGCGGCACGCTGCCGAAGC
GATGCCGTCCTTGCGCGCCGCGGCGGCAGCCGGCGTGGATGGCGGAGGGA
GCAGCAGGAGCGGCGGCGGCGGTAGCAACAGCGGCGTTGGGTCCGTTTGC
GGCATTTCGGCGCGAGTTTCGTCAACGGAGTATGGCGGCGGCGGAAGAGG
CAGCGGTGGCGTGCTGTTTGGACTTTCGGTAACGTTCCGCGCCGCGCTTC
GGGTCCCGTCGAGCATGGCCGCGTGCTTCACCGCCAGAGGCCGTTGGACG
ATTTCTCTGCACGTCGTCTTGGCGGGTGATGGGGTTGCTGGCTGTGGCGG
CGGCGGCGGCGGCGGCGACAGCGGCGACAGCGGGGGTGGCGCGGCATGGA
CAGCATCTGCTGCCGTGCCGCCGCTGGCGCTCTCGGACGGCAAGCATTGG
GGAGTGGAGATGACCATTGACCTGCCGTCGCTGTCTCCGGTCAGCGCTTC
CTGCTTTCTGGAGTACCGTCTGCAGGCTGAAGAAAGATGCGGCAGCGGCT
CCCCTGATGGGATCGGCGGTGGCGGCGGTGCATCGAGCAGCGATGACGGT
TGCCTTAAGCGCGCCGGTAGCAGCACTCACGGCAACCGTCACGGCAGGGA
AACCGGCACAACGACAGAGGATCTCTCCGGCGTCAGCGTTTCGCTCTGCA
GGCGCCGCTTCGATTTGTTCGACTTTGCTGCTCCGGTCGACGGCGCTTTT
CCGGCCAGCATGGCGGCGGTGCGGGGCGCCGCCGCCGCGGCCGCCGCCGC
CGGCGAAGGTCTCGGCTTGGCTGGCGGCCCAGCCGCCGTCGTTCGATGGC
TTTTCGGGGAAGGCTCGCAGCAGGAAAAAGACGAGGGCCTGGCGGCGGCG
GCAGCGGCGGCTGCGGCGGCAGCGACGGCTGCGGCGGCTGGGGGAGCAGC
GCCGGCGCGCGGAGGAGGCCGGCCGCCGCTGATGAGGGCGTCGGGGGCCT
CATTCGTCCTGCAGGCAGTGCTGCCGGCTGCGATGGGCCAGGGCGCTTTG
CTGCGGCGACTTTTGGCCGACAACAGAGAGGAAGTCGGGGCGACGGCGTC
CTGGAGCCGCGGCGACCGCGATGCGGCAATGCGATTCGGCGACCGAGTCG
TGTTGGTGCGCATCCGGCCCGCATCGAGCCAAGCCGCAATTTCGGGCTTC
GGCGGTTTAGGCGGCAGCAGCAGCGGCGGCGGCAGCGGCGGCAGCGGCGG
CGGCGGCACTAGCGACGAGATGGTTGATCTTCACGTGTCCTGCTCGCACG
CCGAGGCAGCACCACTCGTGCGAGAAGCGCTGCTGCACCGGCTCACGATA
CTGTGTCATTCCACTGCAGCAGCCGACTTGGCAGCGGGAGCGGCAATGGC
TGCGGCAGCGAGCCTGGTACGGAACCTGCATGTGTCGATTGAAGCTATCG
CTTCGGCGGCGCGGGAAGCGCAGTCCATCGTGGACGCAACTGATGCTCTT
GCCGCAGTCGCTTCTGCGGTCGATAACCCATCGTCCGCGTCCATGCACCT
GCCGTCCTCGTCGATGCGGCTGCCGCAGCTGCCGCAATTAGCGATGGCGG
CTTCGAAGGATGTAGCTCGGCTTGCCGCGACCATGCGTGACGAGTATGCG
TCGGTGCGGGAGCGCGGGCAGCGGGATGGAGGCAACATATTCTCATGA
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