mRNA_P-wetherbeei_contig57092.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57092.1.1
Unique NamemRNA_P-wetherbeei_contig57092.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57092.1.1 vs. uniprot
Match: A0A2M8CSY0_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium CG_4_9_14_3_um_filter_57_17 TaxID=1973904 RepID=A0A2M8CSY0_9CHLR)

HSP 1 Score: 79.3 bits (194), Expect = 1.690e-17
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 TEELRPGEIYRYRFNTGELKGPIQEVVTACGWTYKGITFGKL 126
            TEEL+PG +Y YRF+TGE+K PIQEVVTACGW YKG+ FGKL
Sbjct:  126 TEELKPGVVYNYRFSTGEIKKPIQEVVTACGWEYKGVAFGKL 167          
BLAST of mRNA_P-wetherbeei_contig57092.1.1 vs. uniprot
Match: A0A6N7A8L1_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A6N7A8L1_9CHLR)

HSP 1 Score: 78.2 bits (191), Expect = 4.550e-17
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 TEELRPGEIYRYRFNTGELKGPIQEVVTACGWTYKGITFGKL 126
            TEEL PG++Y+YRFNT ELK PIQE   ACGWTYKG+ FGKL
Sbjct:  124 TEELAPGQVYKYRFNTNELKKPIQEAAAACGWTYKGVAFGKL 165          
BLAST of mRNA_P-wetherbeei_contig57092.1.1 vs. uniprot
Match: A0A7Y4VTU4_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A7Y4VTU4_9CHLR)

HSP 1 Score: 75.5 bits (184), Expect = 5.350e-16
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 TEELRPGEIYRYRFNTGELKGPIQEVVTACGWTYKGITFGKL 126
            TEEL+PG +Y YRF+T E+K PIQE VTACGW YKG+ FGKL
Sbjct:  126 TEELKPGVVYNYRFSTSEIKKPIQEAVTACGWDYKGVAFGKL 167          
BLAST of mRNA_P-wetherbeei_contig57092.1.1 vs. uniprot
Match: A0A497BVS2_9CHLR (Uncharacterized protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A497BVS2_9CHLR)

HSP 1 Score: 74.7 bits (182), Expect = 1.140e-15
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 1
Query:    1 TEELRPGEIYRYRFNTGELKGPIQEVVTACGWTYKGITFGKL 126
            TEEL PG++Y+YRF+T E+K PIQ+ V ACGWTYKG+ FGKL
Sbjct:  129 TEELAPGQVYKYRFSTKEIKKPIQDAVMACGWTYKGVAFGKL 170          
BLAST of mRNA_P-wetherbeei_contig57092.1.1 vs. uniprot
Match: A0A850AMD6_9CHLR (Uncharacterized protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A850AMD6_9CHLR)

HSP 1 Score: 73.9 bits (180), Expect = 2.130e-15
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1
Query:    1 TEELRPGEIYRYRFNTGELKGPIQEVVTACGWTYKGITFGKL 126
            TEE +PG +Y YRFNT E+K PIQE V ACGW YKG+ FGKL
Sbjct:  126 TEEFKPGMVYNYRFNTNEIKKPIQEAVAACGWRYKGVAFGKL 167          
BLAST of mRNA_P-wetherbeei_contig57092.1.1 vs. uniprot
Match: A0A353SXK8_9CHLR (Uncharacterized protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A353SXK8_9CHLR)

HSP 1 Score: 73.6 bits (179), Expect = 2.880e-15
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 TEELRPGEIYRYRFNTGELKGPIQEVVTACGWTYKGITFGKL 126
            TE L PG++Y+Y+FNT ELK PIQE + ACGW+YKG+ FGKL
Sbjct:  124 TETLAPGQVYKYKFNTNELKKPIQEALAACGWSYKGVAFGKL 165          
BLAST of mRNA_P-wetherbeei_contig57092.1.1 vs. uniprot
Match: A0A536TX35_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536TX35_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 3.120e-15
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1
Query:    1 TEELRPGEIYRYRFNTGELKGPIQEVVTACGWTYKGITFGKL 126
            TE+L  G+ Y+YRF TGE+K PIQE VTACGW YKG+ FGKL
Sbjct:   27 TEDLPIGQQYKYRFETGEIKKPIQEAVTACGWIYKGVVFGKL 68          
BLAST of mRNA_P-wetherbeei_contig57092.1.1 vs. uniprot
Match: UPI0019B6270D (Uncharacterized protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=UPI0019B6270D)

HSP 1 Score: 73.2 bits (178), Expect = 4.250e-15
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1
Query:    1 TEELRPGEIYRYRFNTGELKGPIQEVVTACGWTYKGITFGKL 126
            TEE +PG +Y YRFNT ELK PIQE V +CGW YKG+ FGKL
Sbjct:  126 TEEFKPGVVYNYRFNTNELKKPIQEAVASCGWGYKGVAFGKL 167          
BLAST of mRNA_P-wetherbeei_contig57092.1.1 vs. uniprot
Match: A0A177YM68_9NOCA (Uncharacterized protein n=3 Tax=Rhodococcus TaxID=1827 RepID=A0A177YM68_9NOCA)

HSP 1 Score: 73.2 bits (178), Expect = 4.520e-15
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 TEELRPGEIYRYRFNTGELKGPIQEVVTACGWTYKGITFGKL 126
            TE+L  G++Y YRF+TGELK PIQ+ V ACGWTYKG+ FGKL
Sbjct:  129 TEQLEYGQVYNYRFSTGELKKPIQDAVLACGWTYKGVAFGKL 170          
BLAST of mRNA_P-wetherbeei_contig57092.1.1 vs. uniprot
Match: A0A7C3ZPU3_9RHOB (Uncharacterized protein n=1 Tax=Aliiroseovarius sp. TaxID=1872442 RepID=A0A7C3ZPU3_9RHOB)

HSP 1 Score: 72.4 bits (176), Expect = 9.000e-15
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 TEELRPGEIYRYRFNTGELKGPIQEVVTACGWTYKGITFGKL 126
            TEELRPGE+YRYRFN+ ELK P+Q  VT  GWT++G+ FGKL
Sbjct:  129 TEELRPGEVYRYRFNSSELKKPLQRAVTEKGWTWRGVAFGKL 170          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57092.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2M8CSY0_9CHLR1.690e-1776.19Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
A0A6N7A8L1_9CHLR4.550e-1773.81Uncharacterized protein n=1 Tax=Anaerolineaceae ba... [more]
A0A7Y4VTU4_9CHLR5.350e-1671.43Uncharacterized protein n=1 Tax=Anaerolineales bac... [more]
A0A497BVS2_9CHLR1.140e-1569.05Uncharacterized protein n=2 Tax=Chloroflexi TaxID=... [more]
A0A850AMD6_9CHLR2.130e-1569.05Uncharacterized protein n=2 Tax=Chloroflexi TaxID=... [more]
A0A353SXK8_9CHLR2.880e-1566.67Uncharacterized protein n=2 Tax=Chloroflexi TaxID=... [more]
A0A536TX35_9PROT3.120e-1569.05Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI0019B6270D4.250e-1569.05Uncharacterized protein n=1 Tax=Anaerolineales bac... [more]
A0A177YM68_9NOCA4.520e-1569.05Uncharacterized protein n=3 Tax=Rhodococcus TaxID=... [more]
A0A7C3ZPU3_9RHOB9.000e-1569.05Uncharacterized protein n=1 Tax=Aliiroseovarius sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57092contigP-wetherbeei_contig57092:2..130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog644548.SCNU_14836
Model size129
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.85e-13
EggNOG OGs2DXPV@1|root,32V3V@2|Bacteria,2IDU1@201174|Actinobacteria,4GG6T@85026|Gordoniaceae
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.2961538-CDS-P-wetherbeei_contig57092:1..1301683186847.2961538-CDS-P-wetherbeei_contig57092:1..130Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57092 2..130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57092.1.1prot_P-wetherbeei_contig57092.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57092 2..130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57092.1.1

>prot_P-wetherbeei_contig57092.1.1 ID=prot_P-wetherbeei_contig57092.1.1|Name=mRNA_P-wetherbeei_contig57092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=43bp
TEELRPGEIYRYRFNTGELKGPIQEVVTACGWTYKGITFGKL*
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mRNA from alignment at P-wetherbeei_contig57092:2..130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57092.1.1 ID=mRNA_P-wetherbeei_contig57092.1.1|Name=mRNA_P-wetherbeei_contig57092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig57092:2..130+ (Phaeothamnion wetherbeei SAG_119_79)
ACCGAAGAGCTGCGTCCCGGCGAGATCTACCGGTACCGGTTCAACACCGG CGAGCTGAAGGGCCCCATCCAGGAGGTCGTCACCGCCTGCGGCTGGACCT ACAAGGGCATCACCTTCGGCAAGCTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57092:2..130+

>mRNA_P-wetherbeei_contig57092.1.1 ID=mRNA_P-wetherbeei_contig57092.1.1|Name=mRNA_P-wetherbeei_contig57092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig57092:2..130+ (Phaeothamnion wetherbeei SAG_119_79)
ACCGAAGAGCTGCGTCCCGGCGAGATCTACCGGTACCGGTTCAACACCGG
CGAGCTGAAGGGCCCCATCCAGGAGGTCGTCACCGCCTGCGGCTGGACCT
ACAAGGGCATCACCTTCGGCAAGCTGTAG
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