mRNA_P-wetherbeei_contig5709.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5709.3.1
Unique NamemRNA_P-wetherbeei_contig5709.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5709.3.1 vs. uniprot
Match: I3SP32_LOTJA (RING-type domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SP32_LOTJA)

HSP 1 Score: 67.0 bits (162), Expect = 3.160e-12
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   73 CGICLNNFELGQEIRSLRCDHFFHRGCVDSWFRLSS-LCPFCKRTQGSTHAI 225
            C +CL+  E G+EIR LRCDHFFHR C+D+WF   +  CP C+ + G   AI
Sbjct:   62 CAVCLSKIEGGEEIRVLRCDHFFHRDCLDTWFGFKNPTCPLCRGSMGPRRAI 113          
BLAST of mRNA_P-wetherbeei_contig5709.3.1 vs. uniprot
Match: A0A6B2LUE7_9EUKA (RING-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LUE7_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 1.220e-11
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   61 DDSCCGICLNNFELGQEIRSLRCDHFFHRGCVDSWFRLSSLCPFCK 198
            +D+ C ICLN +E+ Q++R L+C H FH+ C+D W + S  CP CK
Sbjct:   16 EDTQCSICLNQYEINQKLRRLKCFHCFHQECIDEWLKTSKKCPICK 61          
BLAST of mRNA_P-wetherbeei_contig5709.3.1 vs. uniprot
Match: A0A7N2R3B8_QUELO (RING-type domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2R3B8_QUELO)

HSP 1 Score: 65.5 bits (158), Expect = 2.940e-11
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   58 QDDSCCGICLNNFELGQEIRSLRCDHFFHRGCVDSWFRLSSLCPFCK 198
            + D  C ICL  FE+G E+R + C H FH GC+++W R+  LCP C+
Sbjct:   42 ESDKACSICLEEFEVGGEVREMPCKHKFHSGCIENWLRVKGLCPLCR 88          
BLAST of mRNA_P-wetherbeei_contig5709.3.1 vs. uniprot
Match: A0A2D4BWU5_PYTIN (Transmembrane protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWU5_PYTIN)

HSP 1 Score: 67.0 bits (162), Expect = 4.390e-11
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   61 DDSCCGICLNNFELGQEIRSLRCDHFFHRGCVDSWFRLSSLCPFCKR 201
            DDS C ICLN +EL QE+R L C+H FH+ CVD W  +++ CP C++
Sbjct:  536 DDSSCCICLNEYELSQELRVLPCEHHFHKECVDEWLLVNATCPTCRK 582          
BLAST of mRNA_P-wetherbeei_contig5709.3.1 vs. uniprot
Match: A0A438NB21_EXOME (RING-type domain-containing protein n=1 Tax=Exophiala mesophila TaxID=212818 RepID=A0A438NB21_EXOME)

HSP 1 Score: 65.5 bits (158), Expect = 5.010e-11
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   58 QDDSCCGICLNNFELGQEIRSLRCDHFFHRGCVDSWF-RLSSLCPFCK 198
            +DD  C +C++ F +GQ++R LRCDH+FH  C+D W   +SS CP C+
Sbjct:  156 KDDKICALCMDTFSVGQKVRLLRCDHYFHPDCIDPWLLNMSSTCPLCR 203          
BLAST of mRNA_P-wetherbeei_contig5709.3.1 vs. uniprot
Match: A0A3S3N2R5_9MAGN (E3 ubiquitin-protein ligase RNF181-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3N2R5_9MAGN)

HSP 1 Score: 64.7 bits (156), Expect = 5.240e-11
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   49 ENSQDDSCCGICLNNFELGQEIRSLRCDHFFHRGCVDSWFRLSSL-CPFCKRT 204
            E+S++   C +CL N E G+EIR LRC+H FHRGC+D+W     L CP C+ T
Sbjct:   84 EDSEELVQCAVCLCNIEEGEEIRELRCEHLFHRGCLDAWLGYRHLTCPICRET 136          
BLAST of mRNA_P-wetherbeei_contig5709.3.1 vs. uniprot
Match: A0A7S1ES25_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ES25_9RHOD)

HSP 1 Score: 63.5 bits (153), Expect = 1.090e-10
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   52 NSQDDSC-----CGICLNNFELGQEIRSLRCDHFFHRGCVDSWFRLSSLCPFCKR 201
            NS DDSC     C IC+  +E  + +R L+C+H +HR CVD W RLS+ CP C++
Sbjct:  105 NSIDDSCKFGDECIICMTKYEKAELLRVLKCEHVYHRDCVDPWLRLSTQCPLCRQ 159          
BLAST of mRNA_P-wetherbeei_contig5709.3.1 vs. uniprot
Match: A0A7S2DN40_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2DN40_9DINO)

HSP 1 Score: 63.2 bits (152), Expect = 1.480e-10
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   40 ADAENSQDDSCCGICLNNFELGQEIRSLRCDHFFHRGCVDSWFRLSSLCPFCK 198
            AD +N  + + C IC+ +FE G E+R+L C H FH  CVD W +++S+CP C+
Sbjct:  104 ADGKNGGEGTNCQICMEDFEEGDELRTLPCFHLFHAKCVDQWLKVNSICPTCR 156          
BLAST of mRNA_P-wetherbeei_contig5709.3.1 vs. uniprot
Match: A0A197K4N2_9FUNG (RING-type domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K4N2_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 2.110e-10
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1
Query:   58 QDDSCCGICLNNFELGQEIRSLRCDHFFHRGCVDSWFRLSSLCPFCKR 201
            + D+ C ICL  +E  +E+R +RC H+FH+ CVD W RL   CP CKR
Sbjct:  657 EQDAVCAICLCEYEDDEELRKMRCTHYFHKECVDEWLRLHRNCPLCKR 704          
BLAST of mRNA_P-wetherbeei_contig5709.3.1 vs. uniprot
Match: UPI00054024F3 (NEP1-interacting protein-like 2 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00054024F3)

HSP 1 Score: 63.5 bits (153), Expect = 2.600e-10
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   58 QDDSCCGICLNNFELGQEIRSL-RCDHFFHRGCVDSWFRLSSLCPFCKR 201
            ++DSCC ICL +FE+G   RSL  C H FH+ CVD W    S CP C+R
Sbjct:  167 EEDSCCAICLQDFEVGDTARSLPHCRHTFHQNCVDKWLVTRSSCPVCRR 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5709.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I3SP32_LOTJA3.160e-1251.92RING-type domain-containing protein n=1 Tax=Lotus ... [more]
A0A6B2LUE7_9EUKA1.220e-1147.83RING-type domain-containing protein n=1 Tax=Arcell... [more]
A0A7N2R3B8_QUELO2.940e-1146.81RING-type domain-containing protein n=1 Tax=Quercu... [more]
A0A2D4BWU5_PYTIN4.390e-1153.19Transmembrane protein, putative n=1 Tax=Pythium in... [more]
A0A438NB21_EXOME5.010e-1147.92RING-type domain-containing protein n=1 Tax=Exophi... [more]
A0A3S3N2R5_9MAGN5.240e-1150.94E3 ubiquitin-protein ligase RNF181-like protein n=... [more]
A0A7S1ES25_9RHOD1.090e-1047.27Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S2DN40_9DINO1.480e-1045.28Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A197K4N2_9FUNG2.110e-1050.00RING-type domain-containing protein n=1 Tax=Linnem... [more]
UPI00054024F32.600e-1053.06NEP1-interacting protein-like 2 n=1 Tax=Beta vulga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5709contigP-wetherbeei_contig5709:3248..3499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4641.GSMUA_Achr2P16960_001
PFAMszf-RING_2
Model size252
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.75e-12
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37P27@33090|Viridiplantae,3GGM5@35493|Streptophyta,3KUH0@4447|Liliopsida
DescriptionRing finger domain
Cds size252
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.2206087-CDS-P-wetherbeei_contig5709:3247..34991683186847.2206087-CDS-P-wetherbeei_contig5709:3247..3499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5709 3248..3499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5709.3.1prot_P-wetherbeei_contig5709.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5709 3248..3499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5709.3.1

>prot_P-wetherbeei_contig5709.3.1 ID=prot_P-wetherbeei_contig5709.3.1|Name=mRNA_P-wetherbeei_contig5709.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
SQGPATGAAAAPSADAENSQDDSCCGICLNNFELGQEIRSLRCDHFFHRG
CVDSWFRLSSLCPFCKRTQGSTHAIAAPPRVAAA
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mRNA from alignment at P-wetherbeei_contig5709:3248..3499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5709.3.1 ID=mRNA_P-wetherbeei_contig5709.3.1|Name=mRNA_P-wetherbeei_contig5709.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig5709:3248..3499+ (Phaeothamnion wetherbeei SAG_119_79)
TCCCAGGGTCCCGCTACTGGCGCTGCGGCCGCACCGTCGGCCGATGCGGA AAACAGCCAGGACGACTCGTGCTGCGGCATCTGCCTCAACAACTTCGAGC TCGGCCAAGAGATCCGGAGCCTGCGGTGCGACCACTTCTTCCACCGGGGC TGCGTAGATTCATGGTTCCGCCTCTCCAGCCTATGTCCATTTTGCAAGCG GACGCAGGGATCGACGCATGCGATTGCGGCGCCGCCGCGGGTGGCGGCGG CG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5709:3248..3499+

>mRNA_P-wetherbeei_contig5709.3.1 ID=mRNA_P-wetherbeei_contig5709.3.1|Name=mRNA_P-wetherbeei_contig5709.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig5709:3248..3499+ (Phaeothamnion wetherbeei SAG_119_79)
TCCCAGGGTCCCGCTACTGGCGCTGCGGCCGCACCGTCGGCCGATGCGGA
AAACAGCCAGGACGACTCGTGCTGCGGCATCTGCCTCAACAACTTCGAGC
TCGGCCAAGAGATCCGGAGCCTGCGGTGCGACCACTTCTTCCACCGGGGC
TGCGTAGATTCATGGTTCCGCCTCTCCAGCCTATGTCCATTTTGCAAGCG
GACGCAGGGATCGACGCATGCGATTGCGGCGCCGCCGCGGGTGGCGGCGG
CG
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