mRNA_P-wetherbeei_contig5703.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5703.1.1
Unique NamemRNA_P-wetherbeei_contig5703.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5703.1.1 vs. uniprot
Match: A0A7S3US62_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3US62_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 1.610e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   13 WIVKPAAQSNRGYGIRVVSTPDEVLAITDGIREGSDESRWAKTGWIVQRYIERPLLIKGRKFDIR 207
            WIVKPA+ SNRG GI V    +EVLA+ D   +  D  R+   GWIVQRY+  PLL++GRKFD+R
Sbjct:  105 WIVKPASMSNRGMGIEVKPGGEEVLALVDRPLKSGDRRRF---GWIVQRYMMNPLLVRGRKFDVR 166
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BLAST of mRNA_P-wetherbeei_contig5703.1.1 vs. uniprot
Match: A0A7S2RQG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQG7_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.260e-14
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   13 WIVKPAAQSNRGYGIRVVSTPDEVLAITDGIREGSDESRWAKTGWIVQRYIERPLLIKGRKFDIR 207
            WI+KPA+ +NRG GI+V S   +V AI   +REGS + R  + G+IVQ+YIERPLL+ GRKFDIR
Sbjct:   94 WILKPASLANRGNGIQVASEWPQVEAI---VREGSLQRR-NRAGYIVQKYIERPLLVHGRKFDIR 154
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BLAST of mRNA_P-wetherbeei_contig5703.1.1 vs. uniprot
Match: A0A7S1GB26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GB26_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.410e-13
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   13 WIVKPAAQSNRGYGIRVVSTPDEVLAITDGIREGSDESRWAKTGWIVQRYIERPLLIKGRKFDIR 207
            WI+KPA  +NRG GI VV T   V A++D +R+G  + R     WIVQRY+E PLL++GRKFDIR
Sbjct:  108 WIIKPAVMTNRGTGISVVDT---VEAVSDIVRKGEAKKRQ----WIVQRYMETPLLVRGRKFDIR 165
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BLAST of mRNA_P-wetherbeei_contig5703.1.1 vs. uniprot
Match: A0A7S3ZJX7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJX7_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.270e-13
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   13 WIVKPAAQSNRGYGIRVVSTPDEVLAITDGIREGSDESRWAKTGWIVQRYIERPLLIKGRKFDIR 207
            WI+KPA+ SNRG+GIRV +   E+ AI     E   ++R    GW+ Q+YIERPLLI GRKFDIR
Sbjct:  180 WILKPASMSNRGFGIRVANDLAEIEAIVS--TEARKDARCG--GWVCQKYIERPLLIDGRKFDIR 240
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BLAST of mRNA_P-wetherbeei_contig5703.1.1 vs. uniprot
Match: A0A6H5LNH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNH0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 8.160e-13
Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    7 PTWIVKPAAQSNRGYGIRVVST---------------------------PDEVLAITD--GIREGSDESRWAKTGWIVQRYIERPLLIKGRKFDIR 207
            PTW+VKPAA SN G+GI+V  +                           P + LA  D  GI + +D ++  ++GW+VQRYIERPLL++GRKFDIR
Sbjct:  416 PTWVVKPAANSNCGFGIQVCCSRELLPSNISESVTAASSANRCPLGLPRPPDFLASQDVLGIVDATD-NKAGRSGWVVQRYIERPLLVRGRKFDIR 510
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BLAST of mRNA_P-wetherbeei_contig5703.1.1 vs. uniprot
Match: A0A812Y2R4_9DINO (TTLL3 protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812Y2R4_9DINO)

HSP 1 Score: 67.0 bits (162), Expect = 1.930e-12
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    4 QPTWIVKPAAQSNRGYGIRVVSTPDEVLAITDGIREGSDESRWAKTGWIVQRYIERPLLIKGRKFDIR 207
            Q  WIVKPA  +NRG GIR+  T +EV A  D            +  W +Q+YIE+PLL+ GRKFDIR
Sbjct:   19 QRIWIVKPAEWANRGCGIRIFKTIEEVRARVDA----------KERAWAIQKYIEKPLLVHGRKFDIR 76
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BLAST of mRNA_P-wetherbeei_contig5703.1.1 vs. uniprot
Match: UPI0012ED34B2 (tubulin monoglycylase TTLL3-like isoform X1 n=2 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012ED34B2)

HSP 1 Score: 68.2 bits (165), Expect = 9.940e-12
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   13 WIVKPAAQSNRGYGIRVVSTPDEVLAITDGIREGSDESRWAKTGWIVQRYIERPLLIKGRKFDIR 207
            WI+KP A+S RG GI  ++  +E+LA+ DG R  + ES+W     +VQ+Y+ERPLL+ G KFD+R
Sbjct:  397 WIIKPGAKS-RGRGIMCINRLEEILALVDGDRALTKESKW-----VVQKYLERPLLVHGTKFDLR 455
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BLAST of mRNA_P-wetherbeei_contig5703.1.1 vs. uniprot
Match: A0A813C5W5_9DINO (TTLL3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C5W5_9DINO)

HSP 1 Score: 67.0 bits (162), Expect = 1.480e-11
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    4 QPTWIVKPAAQSNRGYGIRVVSTPDEVLAITDGIREGSDESRWAKTGWIVQRYIERPLLIKGRKFDIR 207
            Q  WIVKPA  +NRG GIR+  T +EV A  D            +  W +Q+YIE+PLL+ GRKFDIR
Sbjct:  112 QRIWIVKPAEWANRGCGIRIFKTIEEVRARVDA----------KERAWAIQKYIEKPLLVHGRKFDIR 169
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BLAST of mRNA_P-wetherbeei_contig5703.1.1 vs. uniprot
Match: UPI001C4C2CFC (LOW QUALITY PROTEIN: tubulin monoglycylase TTLL3 n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4C2CFC)

HSP 1 Score: 67.4 bits (163), Expect = 1.850e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   13 WIVKPAAQSNRGYGIRVVSTPDEVLAITDGIREGSDESRWAKTGWIVQRYIERPLLIKGRKFDIR 207
            WI+KP A+S RG GI  ++  DE+LA+ D  R  + ES+W     +VQ+Y+ERPLL+ G KFD+R
Sbjct:  334 WIIKPGAKS-RGRGILCINRLDEILALVDSDRAMTKESKW-----VVQKYLERPLLVHGTKFDLR 392
[Close]
BLAST of mRNA_P-wetherbeei_contig5703.1.1 vs. uniprot
Match: A0A1Q9E8S7_SYMMI (Tubulin--tyrosine ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E8S7_SYMMI)

HSP 1 Score: 67.0 bits (162), Expect = 2.410e-11
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    4 QPTWIVKPAAQSNRGYGIRVVSTPDEVLAITDGIREGSDESRWAKTGWIVQRYIERPLLIKGRKFDIR 207
            Q  WIVKPA  +NRG GIR+  T +EV A  D            +  W +Q+YIE+PLL+ GRKFDIR
Sbjct:   89 QRIWIVKPAEWANRGCGIRIFKTIEEVRARVDA----------KERAWAIQKYIEKPLLVHGRKFDIR 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5703.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3US62_HETAK1.610e-1455.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RQG7_9STRA4.260e-1458.46Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1GB26_9STRA2.410e-1355.38Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3ZJX7_9STRA4.270e-1355.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6H5LNH0_9PHAE8.160e-1341.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812Y2R4_9DINO1.930e-1248.53TTLL3 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
UPI0012ED34B29.940e-1249.23tubulin monoglycylase TTLL3-like isoform X1 n=2 Ta... [more]
A0A813C5W5_9DINO1.480e-1148.53TTLL3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
UPI001C4C2CFC1.850e-1149.23LOW QUALITY PROTEIN: tubulin monoglycylase TTLL3 n... [more]
A0A1Q9E8S7_SYMMI2.410e-1148.53Tubulin--tyrosine ligase n=1 Tax=Symbiodinium micr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5703contigP-wetherbeei_contig5703:100..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog215358.XP_010744558.1
Preferred nameTTLL8
PFAMsTTL
Model size210
Max annot lvl33208|Metazoa
KEGG koko:K05755,ko:K16608
KEGG Pathwayko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map04144,map04666,map04810,map05100,map05130,map05131,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001578,GO:0003006,GO:0003341,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0006464,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0009653,GO:0009987,GO:0015630,GO:0016043,GO:0016874,GO:0016879,GO:0016881,GO:0018094,GO:0018193,GO:0018200,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0035082,GO:0036211,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0048232,GO:0048468,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0051704,GO:0060271,GO:0070735,GO:0070736,GO:0070737,GO:0070738,GO:0070925,GO:0071704,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140096,GO:1901564
Exons2
Evalue1.06e-11
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota,38EAN@33154|Opisthokonta,3B9RM@33208|Metazoa,3CVG8@33213|Bilateria,4873H@7711|Chordata,48WEE@7742|Vertebrata,49ZN2@7898|Actinopterygii
DescriptionTubulin tyrosine ligase-like family, member 3
Cds size210
COG categoryO
BRITEko00000,ko00001,ko01000,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186846.5608058-CDS-P-wetherbeei_contig5703:99..2281683186846.5608058-CDS-P-wetherbeei_contig5703:99..228Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5703 100..228 -
1683186846.5731914-CDS-P-wetherbeei_contig5703:482..5631683186846.5731914-CDS-P-wetherbeei_contig5703:482..563Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5703 483..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5703.1.1prot_P-wetherbeei_contig5703.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5703 100..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5703.1.1

>prot_P-wetherbeei_contig5703.1.1 ID=prot_P-wetherbeei_contig5703.1.1|Name=mRNA_P-wetherbeei_contig5703.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
GQPTWIVKPAAQSNRGYGIRVVSTPDEVLAITDGIREGSDESRWAKTGWI
VQRYIERPLLIKGRKFDIR*
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mRNA from alignment at P-wetherbeei_contig5703:100..563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5703.1.1 ID=mRNA_P-wetherbeei_contig5703.1.1|Name=mRNA_P-wetherbeei_contig5703.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=464bp|location=Sequence derived from alignment at P-wetherbeei_contig5703:100..563- (Phaeothamnion wetherbeei SAG_119_79)
GGGCAGCCGACGTGGATCGTCAAGCCGGCGGCGCAGAGCAACCGCGGCTA
CGGGATCCGCGTCGTGTCCACTCCGGACGAGGTGAGAAACTCTTTCTTCT
TTTTGCTTTCTTTCCTTTTTTTGCACTGACTCTTGAGCCGTTTCGTTTTG
GAATGAAACGTTATAGCTCCAGAAGCAGCCGACTCCGTCTCTTTGTTTTG
TGGCGAAGGCCGCCAATATCCCTAAAACCGTAGCCATGCCGCTTTGGCCC
AAACCACGCTAAGAGCTTGGCACGCAACCGTGCTTCCGGAAATACTTCCC
GCTACTCTCTTTCATAAAATGAATGGGAAGAAAAGGTGCTGGCGATAACG
GACGGCATCAGGGAAGGCTCGGACGAGTCGCGGTGGGCCAAGACCGGGTG
GATCGTGCAACGGTACATCGAGCGGCCACTGCTCATCAAGGGCCGCAAGT
TCGACATCCGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5703:100..563-

>mRNA_P-wetherbeei_contig5703.1.1 ID=mRNA_P-wetherbeei_contig5703.1.1|Name=mRNA_P-wetherbeei_contig5703.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig5703:100..563- (Phaeothamnion wetherbeei SAG_119_79)
GGGCAGCCGACGTGGATCGTCAAGCCGGCGGCGCAGAGCAACCGCGGCTA
CGGGATCCGCGTCGTGTCCACTCCGGACGAGGTGCTGGCGATAACGGACG
GCATCAGGGAAGGCTCGGACGAGTCGCGGTGGGCCAAGACCGGGTGGATC
GTGCAACGGTACATCGAGCGGCCACTGCTCATCAAGGGCCGCAAGTTCGA
CATCCGGTGA
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