mRNA_P-wetherbeei_contig5676.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5676.2.1
Unique NamemRNA_P-wetherbeei_contig5676.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5676.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5676contigP-wetherbeei_contig5676:380..1640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size744
Hectar predicted targeting categoryother localisation
Exons2
Cds size741
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.8752348-CDS-P-wetherbeei_contig5676:380..7831683186842.8752348-CDS-P-wetherbeei_contig5676:380..783Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5676 381..783 -
1683186842.8849323-CDS-P-wetherbeei_contig5676:1302..16401683186842.8849323-CDS-P-wetherbeei_contig5676:1302..1640Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5676 1303..1640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5676.2.1prot_P-wetherbeei_contig5676.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5676 381..1640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5676.2.1

>prot_P-wetherbeei_contig5676.2.1 ID=prot_P-wetherbeei_contig5676.2.1|Name=mRNA_P-wetherbeei_contig5676.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=247bp
AAHDAGVVHPACGGAFIKTAGPVAMAAPYTPETLHPAAFGRVTRAPDEHE
AGGGDLATAPLVKALFALRRREPWQWGPEERVAILQAMASVGGSGNVVRR
WMEREDPEVGAEIGGGGGGMMMLLAHDTCCRELWRARYLSLRDEPRRRER
EAARALKKSAAEAAAAAEAKEAAAAAEAAVAAKAAAEAEALAAATRAAAV
AEAAAAAEVAAAAEAVKLAEAGAEAKETVAAADVDSMDFPAGNAPGG
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mRNA from alignment at P-wetherbeei_contig5676:380..1640-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5676.2.1 ID=mRNA_P-wetherbeei_contig5676.2.1|Name=mRNA_P-wetherbeei_contig5676.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1261bp|location=Sequence derived from alignment at P-wetherbeei_contig5676:380..1640- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGCACGACGCCGGAGTGGTGCACCCGGCGTGCGGCGGCGCCTTCAT
CAAGACGGCGGGGCCGGTGGCCATGGCGGCGCCGTACACGCCCGAGACGC
TGCACCCGGCGGCGTTCGGGCGGGTGACCCGCGCGCCGGACGAGCACGAG
GCGGGCGGCGGCGACTTGGCGACGGCGCCGTTGGTGAAGGCCCTCTTCGC
GCTCCGGCGGCGCGAGCCGTGGCAGTGGGGGCCTGAGGAGCGCGTGGCGA
TCTTGCAGGCGATGGCCAGCGTCGGCGGTTCCGGCAATGTAGTCCGGCGG
TGGATGGAGCGTGAGGACCCCGAGGTCGGCGCCGAGATGCGCGGCGAAGA
GCGGCCGCCGCCGCCGCTGGTCGAACTGCCCGGGGATCTGACCGCCAAGG
TGCCGGAGCTGACGCTCAAGCCAGCGCCGCCCGCCGTCCGCGCGGCGGCC
GCTGCGGCGGCAGTGGCCCAGGCGAGCGCCGACCGTGAGCGAGCCGCCGC
CGCCGCCACCGGCGGGGAGTCGGGCTTCGCGCCGCCGCCTCTGCCGCCGG
GCCCGACGTGCGTGCTGTGCAGCGGCGGGTCCGTCGGGGGCGCCGAGCCG
ACCGGCAACACCTGGGTGATGCTGCCGGAACAGCTGGCCCTGCCGCCCGC
CGATGCACTCCGGAAGCACATCGCTGCCGCCGCGCAGGCGGCGCCTAATA
ATGGTGGCGATGGCTATGCGACGCACGACGCAGCCATGCTGCTGTACTCC
GACGATGACGACGCGCCACACGTCATGTGGAAGCGGCGGGGGCTGGCAAT
CGCGCGAAAGCGGGGCGGCGACGCCTTTGCCCACCCTCCCCGCCGCGGCA
GCAGCAGCGGCGGCGGCGGTGGGGGCATGATGATGCTGCTGGCGCACGAC
ACTTGCTGCCGAGAGCTGTGGCGAGCGCGCTACCTCTCATTACGGGATGA
GCCGCGACGCCGCGAGCGGGAGGCCGCCCGGGCGCTGAAGAAAAGTGCGG
CGGAAGCGGCGGCGGCGGCGGAAGCGAAGGAAGCGGCGGCGGCAGCGGAG
GCGGCGGTCGCAGCGAAAGCAGCAGCAGAGGCGGAAGCGTTAGCGGCGGC
AACGAGAGCTGCCGCAGTGGCGGAAGCTGCAGCGGCTGCAGAAGTTGCAG
CGGCAGCCGAGGCAGTAAAGCTTGCGGAAGCGGGTGCCGAAGCGAAAGAG
ACGGTCGCTGCTGCCGATGTCGATAGTATGGACTTCCCCGCCGGCAACGC
GCCCGGCGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5676:380..1640-

>mRNA_P-wetherbeei_contig5676.2.1 ID=mRNA_P-wetherbeei_contig5676.2.1|Name=mRNA_P-wetherbeei_contig5676.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=741bp|location=Sequence derived from alignment at P-wetherbeei_contig5676:380..1640- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGCACGACGCCGGAGTGGTGCACCCGGCGTGCGGCGGCGCCTTCAT
CAAGACGGCGGGGCCGGTGGCCATGGCGGCGCCGTACACGCCCGAGACGC
TGCACCCGGCGGCGTTCGGGCGGGTGACCCGCGCGCCGGACGAGCACGAG
GCGGGCGGCGGCGACTTGGCGACGGCGCCGTTGGTGAAGGCCCTCTTCGC
GCTCCGGCGGCGCGAGCCGTGGCAGTGGGGGCCTGAGGAGCGCGTGGCGA
TCTTGCAGGCGATGGCCAGCGTCGGCGGTTCCGGCAATGTAGTCCGGCGG
TGGATGGAGCGTGAGGACCCCGAGGTCGGCGCCGAGATCGGCGGCGGCGG
TGGGGGCATGATGATGCTGCTGGCGCACGACACTTGCTGCCGAGAGCTGT
GGCGAGCGCGCTACCTCTCATTACGGGATGAGCCGCGACGCCGCGAGCGG
GAGGCCGCCCGGGCGCTGAAGAAAAGTGCGGCGGAAGCGGCGGCGGCGGC
GGAAGCGAAGGAAGCGGCGGCGGCAGCGGAGGCGGCGGTCGCAGCGAAAG
CAGCAGCAGAGGCGGAAGCGTTAGCGGCGGCAACGAGAGCTGCCGCAGTG
GCGGAAGCTGCAGCGGCTGCAGAAGTTGCAGCGGCAGCCGAGGCAGTAAA
GCTTGCGGAAGCGGGTGCCGAAGCGAAAGAGACGGTCGCTGCTGCCGATG
TCGATAGTATGGACTTCCCCGCCGGCAACGCGCCCGGCGGT
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