mRNA_P-wetherbeei_contig56636.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56636.1.1
Unique NamemRNA_P-wetherbeei_contig56636.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56636.1.1 vs. uniprot
Match: UPI001CCCFF7B (hypothetical protein n=1 Tax=Nocardioides lacusdianchii TaxID=2783664 RepID=UPI001CCCFF7B)

HSP 1 Score: 291 bits (746), Expect = 4.530e-96
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
Query:    1 ERRFRTGTLVEWRDGEVVRRVDDGGIAWGERAVAGSGLFAITGGLGGGAFAGPIVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPMDFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVAPDLLDD 438
            ERRFRTGTLVEWRDGEVVRRVDDGGIAWGERAVAGSGLFAITGGLGGGAFAGPIVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPMDFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVAPDLLDD
Sbjct:  265 ERRFRTGTLVEWRDGEVVRRVDDGGIAWGERAVAGSGLFAITGGLGGGAFAGPIVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPMDFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVAPDLLDD 410          
BLAST of mRNA_P-wetherbeei_contig56636.1.1 vs. uniprot
Match: UPI00191EDF5F (hypothetical protein n=1 Tax=Nocardioides baculatus TaxID=2801337 RepID=UPI00191EDF5F)

HSP 1 Score: 178 bits (452), Expect = 7.430e-52
Identity = 89/144 (61.81%), Postives = 108/144 (75.00%), Query Frame = 1
Query:    1 ERRFRTGTLVEWRDGEVVRRVDDGGIAWGERAVAGSGLFAITGGLGGGAFAGPIVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPMDFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVAPDLL 432
            +R FR+G+L+ WRDGEVV R DDG IAWGER VAG G+ A+TGGLGGGA+AGP+V+D  TGA VAYAPI +  S YSDNGHLTA GFLDE+T+LLLV P+ F     G    HLV W+F TG F+++ASG   MR +AVA  L+
Sbjct:  262 QRDFRSGSLLTWRDGEVVHRTDDG-IAWGERMVAGPGMVALTGGLGGGAYAGPVVVDTATGALVAYAPIEEPSSEYSDNGHLTAQGFLDEDTLLLLVAPVRFGKETRGGDEWHLVAWEFRTGGFQIVASGDTRMRDVAVAVGLV 404          
BLAST of mRNA_P-wetherbeei_contig56636.1.1 vs. uniprot
Match: A0A6L6AKL2_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6L6AKL2_9ACTN)

HSP 1 Score: 152 bits (385), Expect = 6.170e-42
Identity = 85/148 (57.43%), Postives = 96/148 (64.86%), Query Frame = 1
Query:    1 ERRFRTGTLVEWRDGEVVRRVDDGGIAWGERAVAGSGLFAITGGLGGGAFA---GPIVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPMDFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVAPDLLD 435
            ER    G L  W D +    V  GG  +GER V   GL A TG  G    A   GP+V+D  TG  + YAPI+D DSVYSDN HLTA+GF+D +TVLL+VTPMDFRTM   D  THLV WDF TGDF  L SGGPG R IAVAPDL+D
Sbjct:  259 ERTRAYGPLRTWNDADDASSVSLGG--YGERYVTRFGLVAYTGNPGPNGMALMSGPVVVDPGTGEILGYAPIKDRDSVYSDNAHLTALGFVDPDTVLLMVTPMDFRTMGPEDGVTHLVAWDFRTGDFSRLGSGGPGARWIAVAPDLVD 404          
BLAST of mRNA_P-wetherbeei_contig56636.1.1 vs. uniprot
Match: A0A4Q2S9Y5_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides ganghwensis TaxID=252230 RepID=A0A4Q2S9Y5_9ACTN)

HSP 1 Score: 140 bits (353), Expect = 1.230e-40
Identity = 66/94 (70.21%), Postives = 75/94 (79.79%), Query Frame = 1
Query:  154 GPIVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPMDFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVAPDLLD 435
            GP+V+D  TG  + YAPI+D DSVYSDN HLTA+GF+D +TVLL+VTPMDFRTM   D  THLV WDF TGDF  L SGGPG+R IAVAPDLLD
Sbjct:    3 GPVVVDPGTGEILGYAPIKDRDSVYSDNAHLTALGFVDPDTVLLMVTPMDFRTMSPEDGVTHLVSWDFRTGDFARLGSGGPGVRWIAVAPDLLD 96          
BLAST of mRNA_P-wetherbeei_contig56636.1.1 vs. uniprot
Match: UPI00174C77D0 (hypothetical protein n=1 Tax=Nocardioides flavus Wang et al. 2016 TaxID=2058780 RepID=UPI00174C77D0)

HSP 1 Score: 146 bits (369), Expect = 1.380e-39
Identity = 82/148 (55.41%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    1 ERRFRTGTLVEWRDGEVVRRVDDGGIAWGERAVAGSGLFAITGGLGGGAFA---GPIVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPMDFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVAPDLLD 435
            ER    G L  W   + V  V  GG  +GER V   GL A TG  G    A   GP+V+D  TG  + YAP+ D DSVYSDN HLTA+GF+D +TVLL+VTPMDFRTM+  D  TH+V WDF TGDF  L SGGP MR IAVAP L+D
Sbjct:  261 ERTRAYGRLRTWNSADDVSSVSLGG--YGERYVTRFGLVAYTGNPGPNGVALMSGPVVVDPGTGEILGYAPVEDRDSVYSDNAHLTALGFVDPDTVLLMVTPMDFRTMRPEDGVTHVVSWDFRTGDFARLTSGGPAMRWIAVAPGLVD 406          
BLAST of mRNA_P-wetherbeei_contig56636.1.1 vs. uniprot
Match: UPI000D7507D0 (hypothetical protein n=1 Tax=Nocardioides solisilvae TaxID=1542435 RepID=UPI000D7507D0)

HSP 1 Score: 144 bits (362), Expect = 2.070e-38
Identity = 84/151 (55.63%), Postives = 97/151 (64.24%), Query Frame = 1
Query:   19 GTLVEWRDGEVVRRVDDGGIA------------WGERAVAGSGLFAITGGLGG-GAFAGPIVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPMDFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVAPDLL 432
            G +VE R  E+  RV DG               WGER V   GL A+TGG  G    AGP+V++A TGA + YAPIRD DSVY DNG LTA+GFLDE+TVLLLV PMDFRTM+ GD   HLV WDF  G FE L +GG GM +IAVA  +L
Sbjct:  271 GPVVEKRWEELDLRVWDGAPHAARITSTVPFGYWGERLVFERGLMALTGGGNGLPGDAGPMVVEAATGAVLGYAPIRDRDSVYGDNGRLTALGFLDEQTVLLLVGPMDFRTMELGDESWHLVAWDFRDGGFERLTTGGTGMHAIAVASGVL 421          
BLAST of mRNA_P-wetherbeei_contig56636.1.1 vs. uniprot
Match: R7XYC2_9ACTN (CRE-ABT-2 protein n=1 Tax=Nocardioides sp. CF8 TaxID=110319 RepID=R7XYC2_9ACTN)

HSP 1 Score: 142 bits (357), Expect = 8.170e-38
Identity = 78/147 (53.06%), Postives = 95/147 (64.63%), Query Frame = 1
Query:    1 ERRFRTGTLVEWRDGEVVRRVDDGGIAWGERAVAGSGLFAITGG---LGGGAFAGPIVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPMDFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVAPDLL 432
            E+R++T  LVEW       RV    + +GER V   GL A TG    +G  + +GP+V+DA TG  V YAP+RD  SVYSDNG +T  GFLD +TVLLLV PM+FRTM+ G    HLV W F  GDFEL+ +G  GMRSI VAP LL
Sbjct:  263 EKRWKTNDLVEWDGDTATNRVIV--LGYGERLVTRFGLVAYTGSPAQMGDVSRSGPVVLDAATGEIVGYAPVRDPSSVYSDNGFMTVQGFLDPDTVLLLVGPMNFRTMELGQEEWHLVAWHFRDGDFELITTGDTGMRSIEVAPALL 407          
BLAST of mRNA_P-wetherbeei_contig56636.1.1 vs. uniprot
Match: UPI0013B3EE5F (hypothetical protein n=1 Tax=Nocardioides sp. 616 TaxID=2268090 RepID=UPI0013B3EE5F)

HSP 1 Score: 135 bits (339), Expect = 5.200e-35
Identity = 80/147 (54.42%), Postives = 94/147 (63.95%), Query Frame = 1
Query:   19 GTLVEWRDGEVVRRVDDGG--IA----------WGERAVAGSGLFAITGGLGG-GAFAGPIVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPMDFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVA 420
            G +VE R  E+  RV DG   +A          WGER +   GL A+TGG  G     GP+V++A TGA V YAPIRD  SVY+DNG+LTA+GFLDEETVLLLV PMDFRTM  G+ + HLV WDF  G FE L SG   M +I VA
Sbjct:  278 GPVVEKRWEELDLRVWDGAPHVASITSSVPFGYWGERLIFERGLVAMTGGGNGLPGDGGPMVVEAATGAVVGYAPIRDRSSVYTDNGYLTALGFLDEETVLLLVGPMDFRTMDLGEEQRHLVAWDFRAGTFERLTSGDSSMSAITVA 424          
BLAST of mRNA_P-wetherbeei_contig56636.1.1 vs. uniprot
Match: A0A6G7YGY5_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides piscis TaxID=2714938 RepID=A0A6G7YGY5_9ACTN)

HSP 1 Score: 125 bits (314), Expect = 1.040e-34
Identity = 61/92 (66.30%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  160 IVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPMDFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVAPDLLD 435
            +V+DA +G  + YAPIRD DSVY DNG+L+A+GFLD  TV+LLV PMDFRTM  GD R HLV WDF TGDFE + SG   MR IAVAP LLD
Sbjct:    1 MVVDAGSGETLGYAPIRDTDSVYGDNGYLSALGFLDPGTVVLLVGPMDFRTMDPGDERWHLVSWDFHTGDFERITSGDTRMRGIAVAPALLD 92          
BLAST of mRNA_P-wetherbeei_contig56636.1.1 vs. uniprot
Match: A0A4P7IKY6_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides seonyuensis TaxID=2518371 RepID=A0A4P7IKY6_9ACTN)

HSP 1 Score: 134 bits (336), Expect = 1.050e-34
Identity = 73/142 (51.41%), Postives = 93/142 (65.49%), Query Frame = 1
Query:   19 GTLVEWRDGEVVRRVDDGGIAWGERAVAGSGLFAITGGLGGGAF----AGPIVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPMDFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVAPDLL 432
            G L  W D +    V  GG  +GER V   GL A TG  G G F    +GP+V+D  +G  +A+APIRD +SVYSDNGHLTA+GFLDE TVLL+V PMDFRTM+  +  +HLV W + TG+FE+L+ G   +R  A AP L+
Sbjct:  270 GALRTWNDHDDASSVILGG--YGERFVTRFGLVAYTGNPGSGGFGVPRSGPVVVDPASGEVLAFAPIRDRNSVYSDNGHLTALGFLDEATVLLMVRPMDFRTMEPEEGVSHLVAWTYETGEFEVLSRGDRDLRLAAFAPALI 409          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56636.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
UPI001CCCFF7B4.530e-96100.00hypothetical protein n=1 Tax=Nocardioides lacusdia... [more]
UPI00191EDF5F7.430e-5261.81hypothetical protein n=1 Tax=Nocardioides baculatu... [more]
A0A6L6AKL2_9ACTN6.170e-4257.43Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A4Q2S9Y5_9ACTN1.230e-4070.21Uncharacterized protein n=1 Tax=Nocardioides gangh... [more]
UPI00174C77D01.380e-3955.41hypothetical protein n=1 Tax=Nocardioides flavus W... [more]
UPI000D7507D02.070e-3855.63hypothetical protein n=1 Tax=Nocardioides solisilv... [more]
R7XYC2_9ACTN8.170e-3853.06CRE-ABT-2 protein n=1 Tax=Nocardioides sp. CF8 Tax... [more]
UPI0013B3EE5F5.200e-3554.42hypothetical protein n=1 Tax=Nocardioides sp. 616 ... [more]
A0A6G7YGY5_9ACTN1.040e-3466.30Uncharacterized protein n=1 Tax=Nocardioides pisci... [more]
A0A4P7IKY6_9ACTN1.050e-3451.41Uncharacterized protein n=1 Tax=Nocardioides seony... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56636contigP-wetherbeei_contig56636:12..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size441
Hectar predicted targeting categoryother localisation
Exons1
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186841.46615-CDS-P-wetherbeei_contig56636:11..4521683186841.46615-CDS-P-wetherbeei_contig56636:11..452Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56636 12..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56636.1.1prot_P-wetherbeei_contig56636.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56636 12..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56636.1.1

>prot_P-wetherbeei_contig56636.1.1 ID=prot_P-wetherbeei_contig56636.1.1|Name=mRNA_P-wetherbeei_contig56636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
ERRFRTGTLVEWRDGEVVRRVDDGGIAWGERAVAGSGLFAITGGLGGGAF
AGPIVIDATTGARVAYAPIRDEDSVYSDNGHLTAMGFLDEETVLLLVTPM
DFRTMQAGDARTHLVVWDFTTGDFELLASGGPGMRSIAVAPDLLDD*
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mRNA from alignment at P-wetherbeei_contig56636:12..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56636.1.1 ID=mRNA_P-wetherbeei_contig56636.1.1|Name=mRNA_P-wetherbeei_contig56636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig56636:12..452+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGGCGGTTCCGGACCGGGACGCTCGTGGAGTGGCGCGACGGCGAGGT CGTACGACGGGTCGACGACGGCGGCATCGCCTGGGGTGAGCGCGCGGTGG CCGGGAGCGGTCTGTTCGCGATCACGGGCGGCCTCGGCGGAGGCGCCTTC GCCGGGCCGATCGTCATCGACGCGACCACCGGTGCGCGGGTGGCGTACGC CCCGATCCGGGACGAGGACTCGGTCTACAGCGACAACGGGCACCTCACGG CCATGGGCTTCCTGGACGAGGAGACGGTGCTGCTGCTGGTGACGCCGATG GACTTCCGCACGATGCAGGCAGGGGACGCCAGGACGCACCTGGTGGTGTG GGACTTCACGACCGGTGACTTCGAGCTCCTCGCCAGTGGTGGCCCGGGCA TGCGATCCATCGCGGTGGCGCCGGACCTGCTGGACGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56636:12..452+

>mRNA_P-wetherbeei_contig56636.1.1 ID=mRNA_P-wetherbeei_contig56636.1.1|Name=mRNA_P-wetherbeei_contig56636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig56636:12..452+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGGCGGTTCCGGACCGGGACGCTCGTGGAGTGGCGCGACGGCGAGGT
CGTACGACGGGTCGACGACGGCGGCATCGCCTGGGGTGAGCGCGCGGTGG
CCGGGAGCGGTCTGTTCGCGATCACGGGCGGCCTCGGCGGAGGCGCCTTC
GCCGGGCCGATCGTCATCGACGCGACCACCGGTGCGCGGGTGGCGTACGC
CCCGATCCGGGACGAGGACTCGGTCTACAGCGACAACGGGCACCTCACGG
CCATGGGCTTCCTGGACGAGGAGACGGTGCTGCTGCTGGTGACGCCGATG
GACTTCCGCACGATGCAGGCAGGGGACGCCAGGACGCACCTGGTGGTGTG
GGACTTCACGACCGGTGACTTCGAGCTCCTCGCCAGTGGTGGCCCGGGCA
TGCGATCCATCGCGGTGGCGCCGGACCTGCTGGACGACTGA
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