mRNA_P-wetherbeei_contig5649.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5649.1.2
Unique NamemRNA_P-wetherbeei_contig5649.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5649.1.2 vs. uniprot
Match: I2CS30_NANGC (Palmitoyltransferase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CS30_NANGC)

HSP 1 Score: 104 bits (259), Expect = 2.760e-21
Identity = 69/206 (33.50%), Postives = 93/206 (45.15%), Query Frame = 3 
Query:  240 VSNMVLICGEKEGRFPAQLLVGPDKACIPATLALVAVPSIFWLLYVAPALGSGVVVAGAVSFAVATSMYLAVACSTPGIV-WRECDAGESGDGXXXXXXXXXXXXXXXXXXXXXXXXGYAPPMTAAGTSRVVVRSAAVAGAMEMQVPRRGARCGVCDVIRPAGAXXXXXXXXXILKHDHXXPWTSKCIGRDNIHVFYAFLLAMALH 854
            +  M+L+CG K+G FP Q LVGPD  C+  T  +V VPSIF+L+ VAP + S +V  G  SF +    +   ACS PGIV W+  + GE                                P+    TS     +A+  G    + P     C  C++ RP GA         +   DH  PWT KCIGR N+  FY FL  + +H
Sbjct:   39 IGRMILLCGRKDGIFPFQCLVGPDWPCMLITYTMVCVPSIFFLILVAPRVSSVIVWVGLASFMLTLFFFSLTACSDPGIVFWQLPNGGEE-----RSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSL----AASSQGFSSARNPVPQIPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVH 235
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BLAST of mRNA_P-wetherbeei_contig5649.1.2 vs. uniprot
Match: A0A812MTL8_9DINO (Palmitoyltransferase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812MTL8_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 1.210e-8
Identity = 69/270 (25.56%), Postives = 99/270 (36.67%), Query Frame = 3 
Query:  120 NRAEGLRALVHSKQPVPPTTMGAALTLERERPPHFYCC-RRVSNMVLICGEKEGR-----FPAQLLVGPDKACIPATLALVAVPSIFWLLYVAPALGSGVVVAGAVSFAVATSMYLAVACSTPGIVWRECDAGESGDGXXXXXXXXXXXXXXXXXXXXXXXXGYAPPMTAAGTSRVVVRSAAVAGAMEMQVPRRG----ARCGVCDVIRPAGAXXXXXXXXXILKHDHXXPWTSKCIGRDNIHVFYAFLLAMALHGWFVMVSTVVWMMTG 899
            N AEG   +    +  P     +  TL        +CC + V N  L+CG          FP   L+GPD  C   T  LV+VPSI +L++VAP L   +V     S A+       V+ S PGI+                                                    +S   A    +Q+  RG    A CG C+  R  GA         + ++DH  PW  K +  +N+  FY FL +M        + ++VWMM+G
Sbjct:   49 NSAEGRHGVPAKYKDSPYWAQYSRGTLPSTGAATCFCCGKMVGNNRLLCGSVHATGLRSYFPFICLIGPDWPCNTVTWGLVSVPSILFLIFVAPFLHIALVXVTFGSLAL-------VSWSNPGIL--------------------------------------------------PAQSPEEAEDQRLQLMERGEFDHALCGHCNTWRSRGAIHCSANGVCVREYDHHCPWMGKAVAGNNLFFFYVFLYSMCTLLGVTGIGSLVWMMSG 261
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BLAST of mRNA_P-wetherbeei_contig5649.1.2 vs. uniprot
Match: A0A6A3F387_9STRA (Palmitoyltransferase n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3F387_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.620e-8
Identity = 55/211 (26.07%), Postives = 80/211 (37.91%), Query Frame = 3 
Query:  228 CCRRVSNMVLICGEKE--GRFPAQLLVGPDKACIPATLALVAVPSIFWLLYVAPALGSGVVVAGAVSFAVATSMYLAVACSTPGIVWRECDAGESGDGXXXXXXXXXXXXXXXXXXXXXXXXGYAPPMTAAGTSRVVVRSAAVAGAMEMQVPRRGARCGVCDVIRPAGAXXXXXXXXXILKHDHXXPWTSKCIGRDNIHVFYAFLLAMALH 854
            CC R     ++C   E  G FP    VGP    +  T  L   P+ F+  +    + +G+ VA  VS  + T+ +  VACS PG+V+R+ +                                                S  + G +E     RG  C  C+V RP  A         + + DH  PWT KC+G+  I  FY FL  ++LH
Sbjct:   37 CCVRYGRTRVLCSLSEDYGYFPGTCHVGPHWGFMLVTYCLAVGPAFFFFAH---DMLTGLKVALLVSICLTTASFTMVACSDPGVVFRDLEV-----------------------------------------------STQLQGDIE-----RGIVCAQCEVRRPLNASHCSDCGVCVRELDHHCPWTGKCVGKRTIKWFYVFLTFISLH 192
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BLAST of mRNA_P-wetherbeei_contig5649.1.2 vs. uniprot
Match: A0A485K847_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K847_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 9.790e-7
Identity = 60/253 (23.72%), Postives = 92/253 (36.36%), Query Frame = 3 
Query:  150 HSKQPVPPTTMGAALTLERERPPHFYCCRRVSNMVLIC--GEKEGRFPAQLLVGPDKACIPATLALVAVP-SIFWLLYVAPALGSGVVVAGAVSFAVATSMYLAVACSTPGIVWRECDAGESGDGXXXXXXXXXXXXXXXXXXXXXXXXGYAPPMTAAGTSRVVVRSAAVAGAMEMQVPRRGARCGVCDVIRPAGAXXXXXXXXXILKHDHXXPWTSKCIGRDNIHVFYAFLLAMALHGWFVMVSTVVWMMTG 899
            H + P+P         +E +   H  CC +      +C    +   FP+ L VGP+  C+  T A++  P ++F+L        S V+    V   VA SM   VACS PG++                                                  V  S   AG +          C  C + RP  A         +   DH  PWT KCIG++ +  FYAFL ++++H  F + + V + + G
Sbjct:    3 HFESPMPDDASSDHDVVEIKEKTHMICCAKYGRTRYLCMRSTRAVYFPSVLHVGPNAGCMLITYAIILAPIAVFFLKDTLATWVSVVLGLSLVCTFVAFSM---VACSDPGVI----------------------------------------------RDHYVTSSGEAAGIL----------CAHCQIRRPNDAIHCYDCEVCVDGMDHHCPWTGKCIGKNTLFWFYAFLCSISVHLTFSVGAAVYYCIGG 196
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5649.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
I2CS30_NANGC2.760e-2133.50Palmitoyltransferase n=2 Tax=Nannochloropsis gadit... [more]
A0A812MTL8_9DINO1.210e-825.56Palmitoyltransferase n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A6A3F387_9STRA1.620e-826.07Palmitoyltransferase n=3 Tax=Phytophthora TaxID=47... [more]
A0A485K847_9STRA9.790e-723.72Palmitoyltransferase n=1 Tax=Aphanomyces stellatus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5649contigP-wetherbeei_contig5649:49..2986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1J4
PFAMsAnk_2,Ank_5,DHHC
Model size2078
Max annot lvl2759|Eukaryota
KEGG koko:K16675,ko:K18932,ko:K20032
KEGG TC9.B.37.1,9.B.37.3
KEGG Pathwayko04391,map04391
Hectar predicted targeting categorysignal anchor
Exons4
Evalue1.55e-10
EggNOG OGsCOG5273@1|root,KOG1311@2759|Eukaryota
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size729
COG categoryZ
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5649.1.2prot_P-wetherbeei_contig5649.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5649 1219..2425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.5524795-UTR-P-wetherbeei_contig5649:48..12181683186839.5524795-UTR-P-wetherbeei_contig5649:48..1218Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5649 49..1218 -
1683186839.6109211-UTR-P-wetherbeei_contig5649:2425..24631683186839.6109211-UTR-P-wetherbeei_contig5649:2425..2463Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5649 2426..2463 -
1683186839.6191974-UTR-P-wetherbeei_contig5649:2845..29861683186839.6191974-UTR-P-wetherbeei_contig5649:2845..2986Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5649 2846..2986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.5658307-CDS-P-wetherbeei_contig5649:1218..13361683186839.5658307-CDS-P-wetherbeei_contig5649:1218..1336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5649 1219..1336 -
1683186839.5786881-CDS-P-wetherbeei_contig5649:1568..15811683186839.5786881-CDS-P-wetherbeei_contig5649:1568..1581Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5649 1569..1581 -
1683186839.600999-CDS-P-wetherbeei_contig5649:1827..24251683186839.600999-CDS-P-wetherbeei_contig5649:1827..2425Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5649 1828..2425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5649.1.2

>prot_P-wetherbeei_contig5649.1.2 ID=prot_P-wetherbeei_contig5649.1.2|Name=mRNA_P-wetherbeei_contig5649.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=243bp
MGAALTLERERPPHFYCCRRVSNMVLICGEKEGRFPAQLLVGPDKACIPA
TLALVAVPSIFWLLYVAPALGSGVVVAGAVSFAVATSMYLAVACSTPGIV
WRECDAGESGDGGGSRGGADSNDGNGGGGGSGGGAAGYAPPMTAAGTSRV
VVRSAAVAGAMEMQVPRRGARCGVCDVIRPAGAMHCARCNACILKHDHHC
PWTSKCIGRDNIHVFYAFLLAMALHGWFVMVSTVVWMMTGPA*
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mRNA from alignment at P-wetherbeei_contig5649:49..2986-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5649.1.2 ID=mRNA_P-wetherbeei_contig5649.1.2|Name=mRNA_P-wetherbeei_contig5649.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2938bp|location=Sequence derived from alignment at P-wetherbeei_contig5649:49..2986- (Phaeothamnion wetherbeei SAG_119_79)
TAAGTTCCCATTAGTTGATTTATTCGGTCGCAACTGGTACTGGTCCGACC
TGTGAAAACGTCCTTCTTTCGAGCGCCTACCTCCTTTGCCCTTTACGCCG
CTGCGACAGTCAGTAAAAAAACAGGGCAGAAGGACTTAGAGGTGAGTTTT
CTGGGACACCTTGTGCTGATCCCATTTCCCTTTGCATTCTATTGTCTCGT
CCTCCTCGATAGTATTCTACACCAGTTTGTGCTTTCACATGTTTGCAGAT
TACTCAGTTCCTTTCGCTTGTGCTAAACGAATCGGCGAGAGAAAGATTCT
GCAGATTCGATCTCCTTGGCCAAAACTTTCGCTTGGAAGATTGTCGTAGC
AGCATTAGTGTTTCGCAGCAGCCTCGCTTTCCTCATGTTTGAGAGAGCGT
TTATTTTTCTGGGCCGGAATGGCAGCGCAACTAGAGTTACAGGACATCGA
AGTTCTGGATGAAACTTGACTCCTGCACTGCTGCCTTTCTCCGCCGCATT
TCCTCCTCTCCCTCTCTTCCCAGCCCTCGTGCACTCCAAACAACCCGTCC
CTCCAACCACCATGGGGGCCGCGCTCACGCTGGAGCGGGAACGGCCACCG
CACTTCTACTGCTGCAGGCGTGTCAGCAACATGGTGCTCATTTGTGGCGA
AAAGGAGGGCCGCTTTCCGGCGCAGCTTCTCGTTGGTCCCGACAAGGCGT
GCATCCCCGCTACGCTGGCGCTCGTCGCCGTGCCGTCTATCTTCTGGCTC
CTCTACGTGGCGCCGGCGCTTGGGAGCGGCGTCGTCGTTGCCGGCGCCGT
CAGCTTCGCCGTTGCGACCTCGATGTACCTAGCCGTTGCTTGCAGCACCC
CGGGGATCGTGTGGCGGGAGTGCGACGCCGGGGAAAGCGGCGACGGCGGC
GGCAGCAGGGGCGGCGCCGACAGCAACGATGGGAACGGCGGCGGTGGCGG
CAGCGGCGGTGGCGCCGCCGGCTATGCTCCGCCGATGACGGCTGCGGGAA
CGAGCAGGGTGGTGGTGAGGTCTGCGGCGGTCGCCGGGGCGATGGAGATG
CAGGTGCCGCGCCGGGGCGCCCGCTGCGGCGTGTGCGACGTGATTCGCCC
CGCCGGAGCGATGCACTGCGCCCGGTGCAACGCGTGCATTCTGAAGCACG
ATCACCACTGTGCGTCGCAACTCTTTATTTCTATGTGTGCCGAGCGTTCG
AACGTTTGGGGCCGTTTTTTGAAACGGCGGCACGTTGCATGCTTGCGTCA
GAAAAAGGGATGCCTCCTGAACGGTCAAATCTTTTAAACGTGGAAGCGAA
TTGAAAGAAGCTGTGCGTTTCCCTCATTCCTAAAGTCTCACCATTCTTCT
CTCTCCGCACTCGCTTCTACCCATTTGCTGCTGCCGATCTTCGTCACTGG
TGCAGGCCCGTGGACAAGGTAAAATAAAAGAGCCAACGCCGTCGGGGCAT
GCGCTTTCGTATTGATGAATTGCACCGCCGGGTCATTCTTTAGCAGGCCA
TCACTCCCCTTTTTGTGCGTTTTACCTCGCATGGCCGTTCTTGGTGGTTT
TAACATTTTCTGACGTAGAACTTTCATGCTTTCCCTCCGTTGCCGCAAAT
CTTGCTGCCAACTCATTGCGACTTTCTTCCGGCCCTCTTGCCACCCGCAG
TAAGTGCATTGGGCGCGACAACATTCATGTCTTCTACGCATTCCTGTTGG
CGATGGCGCTTCACGGTTGGTTCGTCATGGTGTCCACCGTCGTGTGGATG
ATGACGGGGCCCGCTTGACCTGTGACGGCGGGAGCTGCCGGCGGCGGCCG
GCCGCCAGCACCGGCGGCGGCATTGGCGACCGGTGCAGCGGCCAGCAGTG
GTCGGCGGCCGCTGACAGCGGCGGAAGCGACAGACAATTCGCTGCAGCGC
TTATTATCCGCGAACGTTGAAGCTTTGATGCGCCTGCGGCGGTGGTGACT
GCAGCGGTGGCGGCAGCGGCGGCACCCAGAAGCGATTTTGGGAAGGAACT
ACTACACGTACCACGGCCAGCACGCACAATGGCACCTGTGGAACCGTCGG
CGATACTTCCCCCTCGCACTCGTGCCTTTGGTCTGCCCAGGGCGATCAAC
GCCGTTGGTTTCCCTTCATGACTTCGACCGGGAAGGCTTCTTTTCACCCA
TGTGGCCAGCAGACACCCATCAGCAAGCACGAGTTCAACACGGCACGGGA
CATCGAACAGCCAATATTTCCAGTCAGATCTCAAGGAGCAAGCTTTGGGT
GTGTAGGCGTGTACTGCTGGTCCCTCCAGCATCTGCCGAATGCTGTTTCA
TTTGGCGAACGGATACGCCATTTGTGGCCAGCTGGCGGCTTGATGCTGCT
GCGGCTGTATGGCGGCACCATTGCTGGCTGCCGCTGTCGCTGTCGCTGCT
CCTGGCGACCCGCTTTCTCCATGGCATCTCGCCGTCGGGGGTGCCAAACT
CGGCGATGGCTCGAAGATTCCAAAGCGCGTTCAACGCCGATCGCGGAGCG
AACGCTGCCACCAGCCTGGACGGAAGCCTTTCGAGACGCTGCGTGCCAAC
ATTGACACGGACTCGCACAAAAAGACCGAAGGGGCGGTGGCGGTTGCAGC
GGCGGCGGCAGGAGGGTGGGGGAGGTGCTTCGCTTTTGGCCATAACGCAC
AGGTCATCACGGACGGCGCTGGACCCCGCTAGGAGGACCAAGCAGCAACA
AAGGAATGTCCCACTCAGAGGCGAGGCTGCAACGCTGTGGCAATGAAGGG
AAGTAAGTCTTGGCGGATTCTATGGGGAGTTGTTTAAACGGAGCACCGAC
CGGCGGCTCAGAGGGCGGAATTGAATGCCAATTGGCAGCTTGAACAAATT
GGGATTATGAAGAATTGGCAACAAACCCTGAAAATTGTTCGCAGAAACCT
TGAAGCGGGAACACTGAACGACATAATTTAACACCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5649:49..2986-

>mRNA_P-wetherbeei_contig5649.1.2 ID=mRNA_P-wetherbeei_contig5649.1.2|Name=mRNA_P-wetherbeei_contig5649.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig5649:49..2986- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGCCGCGCTCACGCTGGAGCGGGAACGGCCACCGCACTTCTACTG
CTGCAGGCGTGTCAGCAACATGGTGCTCATTTGTGGCGAAAAGGAGGGCC
GCTTTCCGGCGCAGCTTCTCGTTGGTCCCGACAAGGCGTGCATCCCCGCT
ACGCTGGCGCTCGTCGCCGTGCCGTCTATCTTCTGGCTCCTCTACGTGGC
GCCGGCGCTTGGGAGCGGCGTCGTCGTTGCCGGCGCCGTCAGCTTCGCCG
TTGCGACCTCGATGTACCTAGCCGTTGCTTGCAGCACCCCGGGGATCGTG
TGGCGGGAGTGCGACGCCGGGGAAAGCGGCGACGGCGGCGGCAGCAGGGG
CGGCGCCGACAGCAACGATGGGAACGGCGGCGGTGGCGGCAGCGGCGGTG
GCGCCGCCGGCTATGCTCCGCCGATGACGGCTGCGGGAACGAGCAGGGTG
GTGGTGAGGTCTGCGGCGGTCGCCGGGGCGATGGAGATGCAGGTGCCGCG
CCGGGGCGCCCGCTGCGGCGTGTGCGACGTGATTCGCCCCGCCGGAGCGA
TGCACTGCGCCCGGTGCAACGCGTGCATTCTGAAGCACGATCACCACTGC
CCGTGGACAAGTAAGTGCATTGGGCGCGACAACATTCATGTCTTCTACGC
ATTCCTGTTGGCGATGGCGCTTCACGGTTGGTTCGTCATGGTGTCCACCG
TCGTGTGGATGATGACGGGGCCCGCTTGA
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