mRNA_P-wetherbeei_contig5648.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5648.2.1
Unique NamemRNA_P-wetherbeei_contig5648.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5648.2.1 vs. uniprot
Match: A0A7S2BZ69_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZ69_9STRA)

HSP 1 Score: 207 bits (527), Expect = 2.870e-60
Identity = 103/192 (53.65%), Postives = 138/192 (71.88%), Query Frame = 3
Query:    3 VLIFSQMTQALDLLGRYIEWRRWKYCRIDGKSGTIEEKAEEVRVFQEDSSVTIFLLSTRAAGLGINLTAADTVVLYDSDWNPTVDAQAQDRCHRLGQTRPVVVYRLITVGSIEVEMLKRQGDKKKLQRMTVDGGCYSRPGQQ--RPPLTEEELRGYLKDDVESLRNRATNDGADVTISDHELALILDRGLIF 572
            VLIFSQMT  LD+L  Y+  R W+YCRIDG    I E+ + +  F ++  +  F+LSTRA GLGINL AADTV+++DSDWNP  DAQAQDRCHR+GQTRPVVVYRL+T+GS+E++M+++Q  KKKL+RM V GG ++RPG++     +T ++LR  L DDV +L  R T D     I + EL +I+DR  +F
Sbjct:   75 VLIFSQMTALLDILEDYLRNREWRYCRIDGNV-KIGERQQSMDAFNKEEDIFAFMLSTRAGGLGINLQAADTVIIFDSDWNPHQDAQAQDRCHRIGQTRPVVVYRLLTIGSVEIDMMEKQVSKKKLERMCVSGGNFARPGKRTGNTKITVDDLRNLLSDDVANLSGRGTADNKYEGIGETELEMIMDRQRLF 265          
BLAST of mRNA_P-wetherbeei_contig5648.2.1 vs. uniprot
Match: A0A7S2G339_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G339_9STRA)

HSP 1 Score: 206 bits (525), Expect = 5.800e-56
Identity = 107/193 (55.44%), Postives = 144/193 (74.61%), Query Frame = 3
Query:    3 VLIFSQMTQALDLLGRYIEWRRWKYCRIDGKSGTIEEKAEEVRVFQEDSSVTIFLLSTRAAGLGINLTAADTVVLYDSDWNPTVDAQAQDRCHRLGQTRPVVVYRLITVGSIEVEMLKRQGDKKKLQRMTVDGGCYSRPGQQ-RPPLTEEELRGYLKDDVESLRNRATNDGADVT--ISDHELALILDRGLIF 572
            VLIFSQMT+ L++L  Y     W+ CRIDG S  I+E+ +++  F  D  + IF+LSTRA GLGINL AADTV+++DSDWNP  DAQAQDRCHR+GQTRPVVVYRL+T+GS+E++M+++Q  KKKL+RM + GG +SRPGQ+ +  ++ E L+  L DDV  L+ RA  D  D+T  IS+ EL+L+LDR  +F
Sbjct:  547 VLIFSQMTELLNILEDYTNNMGWRTCRIDG-SIKIQERQKQMDAFNNDPDIFIFMLSTRAGGLGINLQAADTVIIFDSDWNPHQDAQAQDRCHRIGQTRPVVVYRLLTIGSVEIDMMEKQISKKKLERMAITGGNFSRPGQRNKTKMSLESLKALLADDVSDLQGRA--DAEDLTNGISNEELSLVLDRPRLF 736          
BLAST of mRNA_P-wetherbeei_contig5648.2.1 vs. uniprot
Match: A0A835Z5K9_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5K9_9STRA)

HSP 1 Score: 196 bits (497), Expect = 5.820e-53
Identity = 104/196 (53.06%), Postives = 137/196 (69.90%), Query Frame = 3
Query:    3 VLIFSQMTQALDLLGRYIEWRRWKYCRIDGKSGTIEEKAEEVRVF---QEDSSVTIFLLSTRAAGLGINLTAADTVVLYDSDWNPTVDAQAQDRCHRLGQTRPVVVYRLITVGSIEVEMLKRQGDKKKLQRMTVDGGCYSRPGQQ-RPPLTEEELRGYLKDDVESLRNRATNDGADVT--ISDHELALILDRGLIF 572
            VL+FSQMT  L +L  Y+  R W YCRIDG S  I+ +A  +  F   + +  + +FLLSTRA GLGINLTAADTVV++DSDWNP  D+QAQDRCHR+GQ  PVVVYRL+T+ S+E++M+++Q  KKKL+RM V GG + + GQ+ R  LT + LRG L DD+ +L+ RA          IS+ EL ++LDR LIF
Sbjct:  370 VLLFSQMTSMLTILEDYLRHRDWGYCRIDGTSALIDRQAS-IDAFNNGETNDDLFVFLLSTRAGGLGINLTAADTVVIFDSDWNPHQDSQAQDRCHRIGQQHPVVVYRLLTLSSVEIDMMEKQISKKKLERMAVAGGDFRKVGQRSRGALTSQALRGLLADDIANLQQRAAAGAGSSAGAISEEELEMVLDRQLIF 564          
BLAST of mRNA_P-wetherbeei_contig5648.2.1 vs. uniprot
Match: A0A7S0BX46_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX46_9STRA)

HSP 1 Score: 189 bits (481), Expect = 7.270e-52
Identity = 99/204 (48.53%), Postives = 139/204 (68.14%), Query Frame = 3
Query:    3 VLIFSQMTQALDLLGRYIEWRRWKYCRIDGKSGTIEEKAEEVRVF-------------QEDSSVTIFLLSTRAAGLGINLTAADTVVLYDSDWNPTVDAQAQDRCHRLGQTRPVVVYRLITVGSIEVEMLKRQGDKKKLQRMTVDGGCYSRPG-QQRPPLTEEELRGYLKDDVESLRNRATNDGADVTISDHELALILDRGLIF 572
            VLIFSQMT  L+++  Y+ WRRWKYCRIDG S  I+++ +++ VF             + D  + +FLLSTRA GLGINLTAADT +++DSDWNP  D+QA DRCHR+GQTRPV VYRL+T GS+++EM+++Q  KKKL+RM + GG + + G + +   + + L   L+DD+E L+ +A     D+ I + EL  ILDR  +F
Sbjct:  229 VLIFSQMTGVLNVMEDYLMWRRWKYCRIDG-STKIDDRQKQMDVFNAEKTSGADGGRNESDERMFVFLLSTRAGGLGINLTAADTCIIFDSDWNPHQDSQAMDRCHRIGQTRPVAVYRLLTAGSVDIEMMEKQISKKKLERMAIVGGDFRKAGARSKGAFSAKALSSLLEDDIEDLQAKAGGI-EDIAIDEVELDQILDRKKLF 430          
BLAST of mRNA_P-wetherbeei_contig5648.2.1 vs. uniprot
Match: A0A7S1VUT2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VUT2_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.200e-51
Identity = 101/212 (47.64%), Postives = 146/212 (68.87%), Query Frame = 3
Query:    3 VLIFSQMTQALDLLGRYIEWRRWKYCRIDGKSGTIEEKAEEVRVF-------------QEDSSVTIFLLSTRAAGLGINLTAADTVVLYDSDWNPTVDAQAQDRCHRLGQTRPVVVYRLITVGSIEVEMLKRQGDKKKLQRMTVDGGCYSRPGQQRP--PLTEEELRGYLKDDVESLRNRATNDGAD-VTISDHELALILDRGLIFAGENAA 590
            VLIFSQMT  L+++  Y+ +R WKYCRIDG S  I+E+  ++ V+             + D    +FLLSTRA GLGINLT+ADT +++DSDWNP  D+QA DRCHR+GQTRPV VYRL+T  S+++EM+++Q  KKKL+RMT+ GG + +PGQ++    +T+E+L   L+DD+++L+++      D V ISD E   I+DR  +F+  +AA
Sbjct:  645 VLIFSQMTALLNVIEDYLRYRNWKYCRIDG-STHIDERQRQMDVYNAEKTKGLGGGRNERDDRFFVFLLSTRAGGLGINLTSADTCIIFDSDWNPHQDSQAMDRCHRIGQTRPVAVYRLLTANSVDIEMMEKQISKKKLERMTITGGEFKKPGQRKSGKSMTQEDLNNLLQDDIQNLKDKGGAVEQDRVEISDEEFDSIMDRKKLFSEGDAA 855          
BLAST of mRNA_P-wetherbeei_contig5648.2.1 vs. uniprot
Match: W7TYC6_9STRA (Snf2 domanin containing helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYC6_9STRA)

HSP 1 Score: 192 bits (488), Expect = 2.090e-50
Identity = 99/202 (49.01%), Postives = 140/202 (69.31%), Query Frame = 3
Query:    3 VLIFSQMTQALDLLGRYIEWRRWKYCRIDGKSGTIEEKAEEVRVFQEDSSVTIFLLSTRAAGLGINLTAADTVVLYDSDWNPTVDAQAQDRCHRLGQTRPVVVYRLITVGSIEVEMLKRQGDKKKLQRMTVDGGCYSRPGQQ-RPPLTEEELRGYLKDDVESLRNRATNDG-----------ADVTISDHELALILDRGLIF 572
            VL+FSQMT+ L +L  Y+ +R+WKYCRIDG S  ++ + E++  F +D S+  FLLSTRA GLGINL  ADTV++YDSDWNP  DAQAQDR HR+GQT+ V VYR++T+GS+E+EM++ Q  KKKL+R+++ GG + + G++ R  +T E LR  L DDV+ ++ R  + G           A+  I++ EL  ILDR  +F
Sbjct:  652 VLLFSQMTEMLTVLEDYLHYRQWKYCRIDG-SVKVDARQEQIEAFNKDPSIFCFLLSTRAGGLGINLAGADTVIIYDSDWNPHRDAQAQDRAHRIGQTKAVAVYRMLTIGSVEIEMMEAQISKKKLERLSITGGDFRQAGRRSRGDITTEGLRRLLADDVKDIQRRHGDGGQEXXXXXXXXXAEEDITEEELGKILDRKGMF 852          
BLAST of mRNA_P-wetherbeei_contig5648.2.1 vs. uniprot
Match: A0A835ZBT7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBT7_9STRA)

HSP 1 Score: 187 bits (476), Expect = 2.470e-49
Identity = 106/208 (50.96%), Postives = 135/208 (64.90%), Query Frame = 3
Query:    3 VLIFSQMTQALDLLGRYIEWRRWKYCRIDGKSGTIEEKAE----EVRVFQEDSSVTIFLLSTRAAGLGINLTAADTVVLYDSDWNPTVDAQAQDRCHRLGQTRPVVVYRLITVGSIEVEMLKRQGDKKKLQRMTVDGGCYSRPGQQ-RPPLTEEELRGYLKDDVESLRNRA-------------TNDGADVTISDHELALILDRGLIF 572
            VL+FSQMT  L +L  Y+  RRW YCRIDG S     +A          +ED  + IFLLSTRA GLGINL AADTV+LYDSDWNP  D QAQDRCHR+GQ  PVVVYRL+T+ S+E+EM+++Q  KKKL+RM + GG + + G++ R  LT + LR  L D++ +LR RA             T +GA   IS+ EL +I+DR  IF
Sbjct:  473 VLVFSQMTSMLSILEDYVRHRRWGYCRIDGSSPLAGRQASIDAFNAGAMEED--LVIFLLSTRAGGLGINLAAADTVILYDSDWNPHQDTQAQDRCHRIGQQHPVVVYRLLTMASVEIEMMEKQMSKKKLERMAIAGGDFRKVGRRSRGALTPQALRRLLADEIANLRQRAEAGPETAAVNAQSTTEGA---ISEDELDVIMDRQRIF 675          
BLAST of mRNA_P-wetherbeei_contig5648.2.1 vs. uniprot
Match: A0A448ZNT5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT5_9STRA)

HSP 1 Score: 188 bits (477), Expect = 4.160e-49
Identity = 96/205 (46.83%), Postives = 139/205 (67.80%), Query Frame = 3
Query:    3 VLIFSQMTQALDLLGRYIEWRRWKYCRIDGKSGTIEEKAEEVRVFQE-------------DSSVTIFLLSTRAAGLGINLTAADTVVLYDSDWNPTVDAQAQDRCHRLGQTRPVVVYRLITVGSIEVEMLKRQGDKKKLQRMTVDGGCYSRPGQQ-RPPLTEEELRGYLKDDVESLRNRATNDGADVTISDHELALILDRGLIFA 575
            VLIFSQMT+ L+++  Y+ +R WKYCRIDG S  I+++   + VF               D    +F+LSTRA GLGINLT+ADT +++DSDWNP  D+QA DRCHRLGQTRP  +YRL+T  S+++EM+++Q  KKKL+RMT+ GG + + G++ +  +T ++L+  L+ D++ L+ R   D  D+ ISD E  LI+DR  +FA
Sbjct:  582 VLIFSQMTKVLNIIEDYLNYRHWKYCRIDG-STNIDDRQAAMDVFNAEKTGGKNGERNLADDRYFVFMLSTRAGGLGINLTSADTCIIFDSDWNPHADSQAMDRCHRLGQTRPCAIYRLLTNNSVDIEMMEKQVSKKKLERMTIAGGDFRKAGRRSQGEMTFDKLQNLLQSDIQDLQGRG-QDIEDIRISDEEFELIMDRTKLFA 784          
BLAST of mRNA_P-wetherbeei_contig5648.2.1 vs. uniprot
Match: A0A6U1QEQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QEQ7_9STRA)

HSP 1 Score: 184 bits (468), Expect = 5.830e-48
Identity = 96/193 (49.74%), Postives = 132/193 (68.39%), Query Frame = 3
Query:    3 VLIFSQMTQALDLLGRYIEWRRWKYCRIDGKSGTIEEKAEEVRVFQEDSSVTIFLLSTRAAGLGINLTAADTVVLYDSDWNPTVDAQAQDRCHRLGQTRPVVVYRLITVGSIEVEMLKRQGDKKKLQRMTVDGGCYSRPGQQRPP---LTEEELRGYLKDDVESLRNRATNDGADVTISDHELALILDRGLIF 572
            VL+FSQMT  L ++  Y+  R W+YCRIDG S  + ++ E +  F  D  V IFLLSTRA GLGINL AADT ++YDSDWNP  D+QAQDRCHR+GQ +PV+VYR +T GS+E+EM+++   KKKL+RM + GG +   G++R     +  + L+  L+DD++SL  R + +     +S+ EL  ILDR LIF
Sbjct:  569 VLLFSQMTGVLSIIEDYLRNRGWRYCRIDG-SVNVFDRQEMIESFNSDPDVFIFLLSTRAGGLGINLAAADTCIIYDSDWNPHQDSQAQDRCHRIGQKKPVMVYRFLTGGSVEIEMMEKAISKKKLERMAIVGGDFHMAGRRRTSEAGMNIDRLQKLLEDDIDSLA-RMSKEENSAEMSETELNTILDRNLIF 759          
BLAST of mRNA_P-wetherbeei_contig5648.2.1 vs. uniprot
Match: D8LDG7_ECTSI (Putative ATP-dependent helicase YFR038W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG7_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 6.030e-48
Identity = 97/196 (49.49%), Postives = 133/196 (67.86%), Query Frame = 3
Query:    3 VLIFSQMTQALDLLGRYIEWRRWKYCRIDGKSGTIEEKAEEVRVFQEDSSVTIFLLSTRAAGLGINLTAADTVVLYDSDWNPTVDAQAQDRCHRLGQTRPVVVYRLITVGSIEVEMLKRQGDKKKLQRMTVDGGCYSRPGQQR-PPLTEEELRGYLKDDVESLRNRA----TNDGADVTISDHELALILDRGLIFA 575
            VLIFSQMT  LD+L  Y+  R W++ RIDG +  ++ +  ++  F  +    +FLLSTRA GLGINL AADT +L+DSDWNP  D+QA  RCHR+GQ +PV+VYRL+T GS+E+EM+ +Q  KKKL+R+ V GG + + G++    +T   LR  L+DDVE L  RA      DG D++I++ EL  ILDR  +FA
Sbjct:  598 VLIFSQMTSLLDVLEDYLRHRGWEFHRIDGSTDVLDRQ-RQIEEFNSNPKFFVFLLSTRAGGLGINLCAADTCILFDSDWNPHQDSQAMARCHRIGQQKPVMVYRLLTTGSVEIEMMAKQISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKRALCPEAGDGVDLSITEEELDGILDRERVFA 792          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5648.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2BZ69_9STRA2.870e-6053.65Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2G339_9STRA5.800e-5655.44Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A835Z5K9_9STRA5.820e-5353.06SNF2 family N-terminal domain-containing protein n... [more]
A0A7S0BX46_9STRA7.270e-5248.53Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1VUT2_9STRA2.200e-5147.64Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
W7TYC6_9STRA2.090e-5049.01Snf2 domanin containing helicase n=3 Tax=Monodopsi... [more]
A0A835ZBT7_9STRA2.470e-4950.96P-loop containing nucleoside triphosphate hydrolas... [more]
A0A448ZNT5_9STRA4.160e-4946.83Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6U1QEQ7_9STRA5.830e-4849.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LDG7_ECTSI6.030e-4849.49Putative ATP-dependent helicase YFR038W n=1 Tax=Ec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5648contigP-wetherbeei_contig5648:995..3593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDG7
PFAMsHelicase_C,SNF2_N
Model size1253
Max annot lvl2759|Eukaryota
KEGG koko:K19001
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.79e-47
EggNOG OGsCOG0553@1|root,KOG0385@2759|Eukaryota
Descriptionhelicase activity
Cds size750
COG categoryKL
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5648.2.1prot_P-wetherbeei_contig5648.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5648 1478..3573 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.3489802-UTR-P-wetherbeei_contig5648:994..14771683186839.3489802-UTR-P-wetherbeei_contig5648:994..1477Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5648 995..1477 -
1683186839.4173849-UTR-P-wetherbeei_contig5648:3573..35931683186839.4173849-UTR-P-wetherbeei_contig5648:3573..3593Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5648 3574..3593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.359964-CDS-P-wetherbeei_contig5648:1477..18151683186839.359964-CDS-P-wetherbeei_contig5648:1477..1815Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5648 1478..1815 -
1683186839.368883-CDS-P-wetherbeei_contig5648:2076..22451683186839.368883-CDS-P-wetherbeei_contig5648:2076..2245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5648 2077..2245 -
1683186839.3779352-CDS-P-wetherbeei_contig5648:2817..29551683186839.3779352-CDS-P-wetherbeei_contig5648:2817..2955Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5648 2818..2955 -
1683186839.387243-CDS-P-wetherbeei_contig5648:3189..32561683186839.387243-CDS-P-wetherbeei_contig5648:3189..3256Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5648 3190..3256 -
1683186839.4051626-CDS-P-wetherbeei_contig5648:3535..35731683186839.4051626-CDS-P-wetherbeei_contig5648:3535..3573Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5648 3536..3573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5648.2.1

>prot_P-wetherbeei_contig5648.2.1 ID=prot_P-wetherbeei_contig5648.2.1|Name=mRNA_P-wetherbeei_contig5648.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=250bp
MTQALDLLGRYIEWRRWKYCRIDGKSGTIEEKAEEVRVFQEDSSVTIFLL
STRAAGLGINLTAADTVVLYDSDWNPTVDAQAQDRCHRLGQTRPVVVYRL
ITVGSIEVEMLKRQGDKKKLQRMTVDGGCYSRPGQQRPPLTEEELRGYLK
DDVESLRNRATNDGADVTISDHELALILDRGLIFAGENAAAAVAATPAAA
AAPGRGTAKEGNGGSGECSGAASAAGPHTLSHQGQMFDVLVPVQLPAAA*
back to top

mRNA from alignment at P-wetherbeei_contig5648:995..3593-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5648.2.1 ID=mRNA_P-wetherbeei_contig5648.2.1|Name=mRNA_P-wetherbeei_contig5648.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2599bp|location=Sequence derived from alignment at P-wetherbeei_contig5648:995..3593- (Phaeothamnion wetherbeei SAG_119_79)
AGGTGCTGATCTTCAGCCAGATGACGCAGGCCCTCGACCTCCTCGGCCGC TACATTGAGTGAGTGAATCAATTTTCCAACGGATAAGTTGACCGGTCGAC CCGACTTCTTTGTCGTTTTCTTTCCATGTTTTATTAGGATCTACGTCTGG CACCTGTCAGACTCTGGGGTTTCTTTCCGGCTTTGAACGTTTGCTGTGGA GGAATGTGTTTTTGAAAGCTTAGACCAAGAACTGTCGCGGGTCGGAACCG CGTGCGGCGGGCCAGCTGACCGGTGTTATTCCCTTTACAGTTGTGCTGGC CGACTTCACAAATTCCCACGCGATAGCGGCTTTTTAGGTGGCGACGGTGG AAGTACTGCCGCATCGACGGCAAGTCGGGCACCATCGAGGAGAAGGCCGA GGAGGTGCGTTTTTTGGGTCCTGCAAGCCCAAGCGGTAGGGGGGATACTT TTACCTTCACCTGTGGCAGACAGGCTGACAGTTCTGCTACTGGGGCAGCG ATTCGCGCGCATTTTGGTGGCCGCTTTCGTGCCGAGACAGTGGACTTTGC CTTCGCTGCCGTGTTTATCCACGTGCCGTTGGCACGCCGTTCACTTTCAC AACCCTTGCCTTCGCTGGTGGTAAGTGAACAAATGCAGGTACGGGTCTTC CAGGAGGACTCGTCGGTGACGATCTTCCTGCTGTCCACGCGGGCGGCCGG CCTCGGCATCAACCTGACGGCGGCCGACACGGTGGTGCTCTACGACTCCG ACTGGAACCCCACCGTTGACGCACAGGTCAGTTGTTACTGTCAGTGCGAT GCGGTGCTCATCAATCGTGCGGTGTAGTGCTGTGTATGAAGCGGAGTCCA GTGCAATCAGTGCTGTCTAGTGCAGGTACGGCAGAGCAATGCAAAGCAGG TAGAGCGGTGCAGTGCGGTGCAGTGCCTTGCGGTGCAGTGCGGTGCAGTG CAATATCTGCGATGGAATGCAGTGCTGCGCAATCCAGTGCGGGATGGAGT CTCCGGGAGGCAGCGGCCGGCCGGAAAAAATGCATCGCAGTGCCTGCGGC GCGGGATGGTAAACGTTCCCTCACGGCGACCTTCGCCGAAAGAGTGTTTG TGCGGCGGCTTCTGGCGAAAGGAGCTGCCGAAAGGAGCTGCCGATTTCGA CTGCAGCGGCAGCTCTCAGTTGCCGCGCGCTGCTGCGGTACCTCGCAGGA CTCGATATTATCTTGAAGAACCTGCTTTTTCTTCTGGCTTCCCTCGTTCC TCGACCGTTCTGACGCTTCATGTCGTTTCCCGTTGTTTGTCGCTTGTCTC GCCGTTCCCCGCTGTCGCGCTGCGGCGTCACGTGACTGCGACCTTCAGGC CCAGGACCGGTGCCACCGGTTGGGGCAGACCCGACCGGTGGTGGTGTACC GCCTCATCACAGTGGGCTCCATCGAGGTGGAAATGCTCAAGCGACAGGGC GACAAGAAGAAGCTGCAGCGCATGACCGTCGACGGCGGCTGCTACAGCCG ACCGGGCCAGCAGCGACGTGAGACTAGTTGGCTAGGGAGCATTGGCTGTT TATAGCTTCCCCTCCCTGCCGCGTGTCTTTCGGAAAAGCTATCCTGTGCG CAAGCGGGTGTTGACGATCTTCGAGGCGGACCTGTTTTTGCTTCGCCCTC CCCTGGAAAACGAGGCATGAAGGCGCACATTCAGCTTTCGCCCCTGAGGT GACTCCACCGTAATCGGCCGAAGCCGACCACACGGTTTTCCATTTTCCCC TGCAAACCAAACATTTTACCGGTGGCAGCCCCGCTGACGGAGGAGGAGCT ACGCGGCTACCTGAAGGATGACGTGGAGAGCCTCCGCAACCGTGCCACCA ACGACGGCGCCGACGTCACAATCTCCGACCACGAGCTCGCCCTCATCCTC GACCGCGGCCTCATCTTCGCTGGCGAGAACGCCGCCGCCGCGGTGGCGGC GACGCCTGCAGCGGCGGCGGCGCCCGGTAGAGGGACCGCCAAGGAGGGCA ACGGGGGCAGCGGCGAGTGCAGTGGAGCGGCTTCGGCGGCAGGGCCGCAC ACTCTGTCGCACCAGGGGCAAATGTTCGACGTGCTCGTCCCAGTGCAGCT GCCCGCCGCCGCATGAGAGCGAGGGTCGGAGCCGCCGGCAACGGCCGCAG CGGCGGCGGCGGCGGTGGTGGATATGACACAACACAGCTACGGGGATGCG GCAGCGGCGGCCTAAGAAGAGTGGCCGGCCTGGCTCGCTCCTCGCATATC TGCGCAGCGCCGCTCGCAGAACATGGCCGCACCGCGGTGGCGGTGTGGCA ACATTTTGACAAGAAGATAGGAAACTTTCGGCCTCTGCCTGCCAGGCGGC AGTTGCGCCAGCATCATGGAACGGCATCGCCGTACTCGGGTGGTGGCAAG GAAGGAAGCCGAGGGGCTAAGGCTGTAGATTGGCCGCGGCGGCGAGGAGC AGCAGCTGCTGTCGGGCGGTTGTGCCCGGGACCAGTGAGTTCCAGCAGCG CTCGCTACAACTTAGCAAAACTAGGGAGGACCACTGTGTAGGCGGGCAGG ATGGGAGACATTTCATCCAATTCCAGCAAAAACTTGTTTAAAAAACAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5648:995..3593-

>mRNA_P-wetherbeei_contig5648.2.1 ID=mRNA_P-wetherbeei_contig5648.2.1|Name=mRNA_P-wetherbeei_contig5648.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig5648:995..3593- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCAGGCCCTCGACCTCCTCGGCCGCTACATTGAGTGGCGACGGTG
GAAGTACTGCCGCATCGACGGCAAGTCGGGCACCATCGAGGAGAAGGCCG
AGGAGGTACGGGTCTTCCAGGAGGACTCGTCGGTGACGATCTTCCTGCTG
TCCACGCGGGCGGCCGGCCTCGGCATCAACCTGACGGCGGCCGACACGGT
GGTGCTCTACGACTCCGACTGGAACCCCACCGTTGACGCACAGGCCCAGG
ACCGGTGCCACCGGTTGGGGCAGACCCGACCGGTGGTGGTGTACCGCCTC
ATCACAGTGGGCTCCATCGAGGTGGAAATGCTCAAGCGACAGGGCGACAA
GAAGAAGCTGCAGCGCATGACCGTCGACGGCGGCTGCTACAGCCGACCGG
GCCAGCAGCGACCCCCGCTGACGGAGGAGGAGCTACGCGGCTACCTGAAG
GATGACGTGGAGAGCCTCCGCAACCGTGCCACCAACGACGGCGCCGACGT
CACAATCTCCGACCACGAGCTCGCCCTCATCCTCGACCGCGGCCTCATCT
TCGCTGGCGAGAACGCCGCCGCCGCGGTGGCGGCGACGCCTGCAGCGGCG
GCGGCGCCCGGTAGAGGGACCGCCAAGGAGGGCAACGGGGGCAGCGGCGA
GTGCAGTGGAGCGGCTTCGGCGGCAGGGCCGCACACTCTGTCGCACCAGG
GGCAAATGTTCGACGTGCTCGTCCCAGTGCAGCTGCCCGCCGCCGCATGA
back to top