mRNA_P-wetherbeei_contig5621.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5621.1.1
Unique NamemRNA_P-wetherbeei_contig5621.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5621.1.1 vs. uniprot
Match: A0A6H5KZ28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ28_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.390e-51
Identity = 94/162 (58.02%), Postives = 104/162 (64.20%), Query Frame = 1
Query:    4 LLDCFPPLERVVLTANGNLQRVVSSYYNSAVTVSIVRCAETEAGSGVYDREVTLSVGDRPFCTARSLVVLHSDACRAAVDTGAAGIGQLFRHLDTLPSFALLNAGRRCG------------------------GGFWRLYDLRSRHLSCRIYEEFPRDLFEL 417
            L+  F  LERVVLTAN NLQRV+SSYYNS VTV ++ C  TE G GVYDREV +SV    FC A+SLVV+H  AC  AV TG  G+GQLF  L+ LP F LLNAGRR G                        GGFWRLYDLRS H+SCRIYEEFP DLF L
Sbjct:  168 LIGHFDALERVVLTANANLQRVISSYYNSPVTVDVIFC--TEVGPGVYDREVEISVLGHVFCVAKSLVVVHDPACAEAVKTGRVGLGQLFHSLNILPRFELLNAGRRVGRSARFSGNSDTIGGEKEGVCTRDDGGFWRLYDLRSGHVSCRIYEEFPPDLFGL 327          
BLAST of mRNA_P-wetherbeei_contig5621.1.1 vs. uniprot
Match: A0A835YNG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNG4_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.030e-48
Identity = 86/156 (55.13%), Postives = 106/156 (67.95%), Query Frame = 1
Query:    1 ALLDCFPPLERVVLTANGNLQRVVSSYYNSAVTVSIVRCAETEAGSGVYDREVTLSVGDRPFCTARSLVVLHSDACRAAVDTGAAGIGQLFRHLDTLPSFALLNAGRRCGG----------------GFWRLYDLRSRHLSCRIYEEFPRDLFELP 420
            A+L  F P+ERVVLTANGNLQR++SSYYN+ V V I +C     G  VY+R VTLSVG   FC A+S+VVLHSDAC  AV+T + GIGQLFRHLDTLP+F LL+ G+                    G WR+YDL S+HLSCRI E+F  +LF++P
Sbjct:  118 AILARFTPMERVVLTANGNLQRIISSYYNAPVDVHIHQC--DRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPSSQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDMP 271          
BLAST of mRNA_P-wetherbeei_contig5621.1.1 vs. uniprot
Match: A0A7S2L0C0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L0C0_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.060e-38
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 1
Query:   16 FPPLERVVLTANGNLQRVVSSYYNSAVTVSIVRCAE-----TEAGSGVYDREVTLSVGDRPFCTARSLVVLHSDACRAAVDTGAAGIGQLFRHLDTLPSFALLNAGRRCGGGFWRLYDLRSRHLSCRIYEEFPRDLFELPRD 426
            F  L+R+ LTANGNLQR+VSS+Y+S VTV +  C E         +GV+DR V L V ++ FC A S + +H   C   V +G  G+GQLFR+LD LP+F LL+AGR   GG WRLY+L+S+ L+C I+E+F  D++ +  D
Sbjct:  162 FSALDRIALTANGNLQRIVSSFYDSPVTVVVNSCVERPRLCASENAGVWDRSVDLKVYNKRFCRATSEITVHEPMCAELVRSGEVGLGQLFRYLDKLPTFDLLDAGRTESGGMWRLYELKSKELTCSIFEDFSPDVWSMMLD 303          
BLAST of mRNA_P-wetherbeei_contig5621.1.1 vs. uniprot
Match: A0A7S1C1D9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C1D9_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.690e-33
Identity = 69/155 (44.52%), Postives = 87/155 (56.13%), Query Frame = 1
Query:    1 ALLDCFPPLERVVLTANGNLQRVVSSYYNSAVTVSIVR------CAETEAGSGVYDREVTLSVGDRPFCTARSLVVLHSDACRAAVDTGAAGIGQLFRHLDTLPSFALLNAGRRCG----------GGFWRLYDLRSRHLSCRIYEEFPRDLFEL 417
            AL+    PL+R+ LTANGNLQR+VSS+Y++ V+V +VR       A     S V+DR V L V D  FC A S+V +H   C A V +G  G+GQLFRHLD LP F L++AGR             G  WR Y L    L C I EEF  D + +
Sbjct:   47 ALVAALSPLDRIALTANGNLQRIVSSFYDAPVSVVVVRNEERASAASRRVPSAVWDRSVALVVHDTTFCRAASVVTVHDAGCAALVRSGKIGLGQLFRHLDRLPKFELVDAGRTRSIGVDGGADDEGRLWRRYRLWCDELECDILEEFVADTWSI 201          
BLAST of mRNA_P-wetherbeei_contig5621.1.1 vs. uniprot
Match: A0A8J5XQW5_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQW5_DIALT)

HSP 1 Score: 128 bits (321), Expect = 5.860e-33
Identity = 68/134 (50.75%), Postives = 84/134 (62.69%), Query Frame = 1
Query:   16 FPPLERVVLTANGNLQRVVSSYYNSAVTVSIVRCAETEAGSGVYDREVTLSVGDRPFCTARSLVVLHSDACRAAVDTGAAGIGQLFRHLDTLPSFALLNAGRRCGGGFWRLYDLRSRHLSCRIYEEFPRDLFEL 417
            F P ER+VLTANGNLQR++SSYYNS V+V++ R A+     G Y+REV LSV    F TA S VVL  D    AV+     +GQLFRH + LP+F LL A +R  G F R Y LR+  ++C I E F   LF L
Sbjct:   26 FSPEERIVLTANGNLQRLISSYYNSTVSVAVKRNAKVAGSDGHYEREVELSVLGVAFATASSAVVLSVDRLVDAVENHGVALGQLFRHFELLPTFELLRASKRPDGSFERAYTLRATGITCTIVERFVPGLFTL 159          
BLAST of mRNA_P-wetherbeei_contig5621.1.1 vs. uniprot
Match: A0A139AYU2_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AYU2_GONPJ)

HSP 1 Score: 122 bits (305), Expect = 3.110e-32
Identity = 69/148 (46.62%), Postives = 87/148 (58.78%), Query Frame = 1
Query:   16 FPPLERVVLTANGNLQRVVSSYYNSAVTVSIVRCAETEAGSG----------------VYDREVTLSVGDRPFCTARSLVVLHSDACRAAVDTGAAGIGQLFRHLDTLPSFALLNAGRRCGGGFWRLYDLRSRHLSCRIYEEFPRDLF 411
            F PLER++LTANGN+QR++S+YYNS V+V IVR  + +  S                 V+DREV +    +  C A S V + +D C   VD    GIGQLFR+L+ LPSFALLN GR  G  FWR Y L S  + C I EEFP  +F
Sbjct:   42 FSPLERILLTANGNVQRILSAYYNSPVSVVIVRNRKIDGASNHVPPPGITSKPKNALAVFDREVRIECLGQVCCKAVSTVKILNDECLRLVDEQKVGIGQLFRYLNVLPSFALLNCGRSTGQ-FWRDYALTSEGVRCEIREEFPDGVF 188          
BLAST of mRNA_P-wetherbeei_contig5621.1.1 vs. uniprot
Match: A0A0L0FYY7_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FYY7_9EUKA)

HSP 1 Score: 122 bits (307), Expect = 4.550e-32
Identity = 68/134 (50.75%), Postives = 81/134 (60.45%), Query Frame = 1
Query:   16 FPPLERVVLTANGNLQRVVSSYYNSAVTVSIVRCAETEAGSGVYDREVTLSVGDRPFCTARSLVVLHSDACRAAVDTGAAGIGQLFRHLDTLPSFALLNAGRRCGGGFWRLYDLRSRHLSCRIYEEFPRDLFEL 417
            F  LER+VLTANG LQR++SSYYN+ VTV I R        G YDREV L + D+ FC A S + L        V+    G+GQLFRHL+ LP F LL  GR   GG  R Y L+S  ++CRI E FPR LF L
Sbjct:   98 FTGLERIVLTANGTLQRIISSYYNAEVTVKI-RHNRPRTDQGWYDREVELLIFDQVFCIATSEIHLDRKEYVDLVEINRIGLGQLFRHLNLLPFFHLLKVGRNPEGGLKRTYTLQSPGITCRITETFPRKLFTL 230          
BLAST of mRNA_P-wetherbeei_contig5621.1.1 vs. uniprot
Match: W7TDI1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDI1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 7.150e-32
Identity = 70/155 (45.16%), Postives = 90/155 (58.06%), Query Frame = 1
Query:    4 LLDCFPPLERVVLTANGNLQRVVSSYYNSAVTVSIVRCAETEAGSGVYDREVTLSVGDRPFCTARSLVVLHSDACRAAVDTGAAGIGQLFRHLDTLPSFALLNAGR-----------------RCGGGFWRLYDLRSRHL-SCRIYEEFPRDLFE 414
            L + F PLERV L+A G+LQR++SSY+NSAVTV I RC E E G  V+DREV LSV    FCTA S +   +  C   +   + G+GQLFRHL   P+F LL+ GR                   GGGFWR+Y+L    + +CRI E F  + F+
Sbjct:  125 LPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCLEIEPG--VFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGGGGFWRVYELDCPGMINCRILERFSSNTFQ 277          
BLAST of mRNA_P-wetherbeei_contig5621.1.1 vs. uniprot
Match: A0A1Z5JUV1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUV1_FISSO)

HSP 1 Score: 117 bits (294), Expect = 7.520e-31
Identity = 62/133 (46.62%), Postives = 85/133 (63.91%), Query Frame = 1
Query:   22 PLERVVLTANGNLQRVVSSYYNSAVTVSIVRCAETEAGSGVYDREVTLSVGDRPFCTARSLVVLHSDACRAAVDTGAAGIGQLFRHLDTLPSFALLNAG-RRCGGGFWRLYDLRSRHLSCRIYEEFPRDLFEL 417
            PL+R+VLTANGNLQR+++SYY++ V+V +  C+  +    V+DR V L V    FC A S V +  D+C+  V +G  G+GQLFR+L+ LP F L  AG     GG WR Y L+   L+C+I EEF   L+EL
Sbjct:   33 PLDRLVLTANGNLQRLIASYYDADVSVRVEGCSFRQENPRVWDRTVYLEVLGVEFCRAESEVTIQQDSCQELVASGQVGLGQLFRYLNVLPMFFLREAGVDPITGGIWREYTLQCDALTCQIREEFIPGLWEL 165          
BLAST of mRNA_P-wetherbeei_contig5621.1.1 vs. uniprot
Match: A0A7S2S6L3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S6L3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.330e-30
Identity = 68/163 (41.72%), Postives = 86/163 (52.76%), Query Frame = 1
Query:   22 PLERVVLTANGNLQRVVSSYYNSAVTVSIVRCA--------------------------------------ETEAGSGVYDREVTLSVGDRPFCTARSLVVLHSDACRAAVDTGAAGIGQLFRHLDTLPSFALLNAGRRCGGGFWRLYDLRSRHLSCRIYEEF 396
            PLER+ LTANGNLQR+ SSYY++ V V + RC                                        +   S V+DR V LSV ++ FC A S V +H   C+  VD+G  GIGQLFRHLD LP+F LL+AGR    G WR Y+LR + L+C I E+F
Sbjct:  220 PLERIALTANGNLQRIFSSYYDAPVHVRVERCEIRLNHRHILEGDLQNSNNLNAAINPLEILSRSNGMASNYSLTQSTVWDRTVHLSVHNKIFCVAVSTVTVHCPLCKRLVDSGEVGIGQLFRHLDKLPTFELLDAGRTEDEGLWRFYELRCKELTCEIREDF 382          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5621.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ28_9PHAE2.390e-5158.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNG4_9STRA2.030e-4855.13Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2L0C0_9STRA1.060e-3847.89Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1C1D9_9STRA3.690e-3344.52Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A8J5XQW5_DIALT5.860e-3350.75Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A139AYU2_GONPJ3.110e-3246.62Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
A0A0L0FYY7_9EUKA4.550e-3250.75Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
W7TDI1_9STRA7.150e-3245.16Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A1Z5JUV1_FISSO7.520e-3146.62Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2S6L3_9STRA2.330e-3041.72Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5621contigP-wetherbeei_contig5621:1328..2368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog72019.SARC_05677T0
Model size432
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.46e-33
EggNOG OGs2DIV6@1|root,2S5ZC@2759|Eukaryota,39QTT@33154|Opisthokonta
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.3024683-CDS-P-wetherbeei_contig5621:1327..13791683186836.3024683-CDS-P-wetherbeei_contig5621:1327..1379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5621 1328..1379 -
1683186836.3200731-CDS-P-wetherbeei_contig5621:1668..18921683186836.3200731-CDS-P-wetherbeei_contig5621:1668..1892Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5621 1669..1892 -
1683186836.3383157-CDS-P-wetherbeei_contig5621:2212..23681683186836.3383157-CDS-P-wetherbeei_contig5621:2212..2368Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5621 2213..2368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5621.1.1prot_P-wetherbeei_contig5621.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5621 1328..2368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5621.1.1

>prot_P-wetherbeei_contig5621.1.1 ID=prot_P-wetherbeei_contig5621.1.1|Name=mRNA_P-wetherbeei_contig5621.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
ALLDCFPPLERVVLTANGNLQRVVSSYYNSAVTVSIVRCAETEAGSGVYD
REVTLSVGDRPFCTARSLVVLHSDACRAAVDTGAAGIGQLFRHLDTLPSF
ALLNAGRRCGGGFWRLYDLRSRHLSCRIYEEFPRDLFELPRDG*
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mRNA from alignment at P-wetherbeei_contig5621:1328..2368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5621.1.1 ID=mRNA_P-wetherbeei_contig5621.1.1|Name=mRNA_P-wetherbeei_contig5621.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1041bp|location=Sequence derived from alignment at P-wetherbeei_contig5621:1328..2368- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCCTGGACTGTTTCCCCCCGTTAGAGCGGGTGGTGCTGACAGCGAA CGGCAACCTGCAGCGCGTCGTGTCGTCGTACTACAACTCCGCTGTGACGG TGTCCATTGTCCGCTGCGCCGAGACCGAGGCTGGCAGCGGTGTCTACGAC AGGGAGGTGAGCTCATTCTAGGGAGAAGGAACAGAGCGCAGTTTTCCGGA CCGTATTTTCTCGTTCCTGTTTGCGCCTTACACGCGGGCTTAGCTGGCTT GAAACACGCTTACGCAGTTGTGCGGCCTGGGCCTGCAAGCAAGCTGAGGA AGCTTGTCGTAGACAACAGCATCTAATTCGCTTCTGCGATATCCAAAATG AAGAATCTGACAACTGCAGGAATCGGTGCAGTAAGCTCGACCTAGCCTTC GGTCTGTGCCCTTTGCGATTGCGGGCGTGCCTGTTCTCCCCACCGGGTGG GATGACATGCCGTCCTCTGCACGCAGGTGACCCTATCTGTGGGCGACCGC CCCTTCTGCACAGCGCGCAGCCTGGTGGTGCTGCACAGCGATGCGTGCCG CGCGGCGGTGGACACGGGCGCCGCCGGCATCGGCCAGCTCTTCCGCCACC TCGACACGCTGCCGAGCTTCGCGCTGCTCAATGCCGGCCGCCGGTGCGGC GGCGGCTTCTGGCGGCTCTATGACCTCCGCAGTCGCCACCTCAGCTGCCG GTGAGCCTACGGTAGCTATCTTCGGAAAGGCGAAGAGTGGGTTGTCTGAT AGCTTGCGTTCTTACGGAAGAACCATAAGCAGCTTGGCAAGACGTGGCAG GTTTCGCAGAGGGCTTTCTGAGCCGCGGTCTTTGCCGGCGACGGTGCGGG GGCGTTGAGGACAGCAGTGGACTTGTATTGTGACAAAAAAATTGTACTTT TGTGTAGTCGAGGATCTTGTTCCGTAGGAGTTTCATACTTGGCATGTTCC TGAGCTCTCCAGCTTCTTGCCGCTGCGATGTTCCCTCAGGATTTACGAGG AGTTTCCCCGAGACCTTTTTGAGCTGCCACGAGATGGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5621:1328..2368-

>mRNA_P-wetherbeei_contig5621.1.1 ID=mRNA_P-wetherbeei_contig5621.1.1|Name=mRNA_P-wetherbeei_contig5621.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig5621:1328..2368- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCCTGGACTGTTTCCCCCCGTTAGAGCGGGTGGTGCTGACAGCGAA
CGGCAACCTGCAGCGCGTCGTGTCGTCGTACTACAACTCCGCTGTGACGG
TGTCCATTGTCCGCTGCGCCGAGACCGAGGCTGGCAGCGGTGTCTACGAC
AGGGAGGTGACCCTATCTGTGGGCGACCGCCCCTTCTGCACAGCGCGCAG
CCTGGTGGTGCTGCACAGCGATGCGTGCCGCGCGGCGGTGGACACGGGCG
CCGCCGGCATCGGCCAGCTCTTCCGCCACCTCGACACGCTGCCGAGCTTC
GCGCTGCTCAATGCCGGCCGCCGGTGCGGCGGCGGCTTCTGGCGGCTCTA
TGACCTCCGCAGTCGCCACCTCAGCTGCCGGATTTACGAGGAGTTTCCCC
GAGACCTTTTTGAGCTGCCACGAGATGGGTAA
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