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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2147 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-19_005040.1 |
| Cds size | 1512 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186835.1739936-UTR-P-wetherbeei_contig5611:677..1103 | 1683186835.1739936-UTR-P-wetherbeei_contig5611:677..1103 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig5611 678..1103 + |
| 1683186835.2066839-UTR-P-wetherbeei_contig5611:3365..3574 | 1683186835.2066839-UTR-P-wetherbeei_contig5611:3365..3574 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig5611 3366..3574 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186835.1829963-CDS-P-wetherbeei_contig5611:1103..1394 | 1683186835.1829963-CDS-P-wetherbeei_contig5611:1103..1394 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig5611 1104..1394 + |
| 1683186835.1909513-CDS-P-wetherbeei_contig5611:1516..1708 | 1683186835.1909513-CDS-P-wetherbeei_contig5611:1516..1708 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig5611 1517..1708 + |
| 1683186835.198745-CDS-P-wetherbeei_contig5611:2336..3365 | 1683186835.198745-CDS-P-wetherbeei_contig5611:2336..3365 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig5611 2337..3365 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5611.1.1 >prot_P-wetherbeei_contig5611.1.1 ID=prot_P-wetherbeei_contig5611.1.1|Name=mRNA_P-wetherbeei_contig5611.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=504bp
METPADDVVERAGYLLYGGVFDIGLLSLGKWSDQNPDTFGLCFAAGARVD
EAQRATTVGDGGRDMAVATLSALSLQLQVVESVMAAAAERSGTNLRRAPG
QPRREYSGCVALWNTASTTTVRGVVRNKQVLYIGEFDLSRSSDGRGLREH
NKSTTVVRPETTLRFDERGGGDLAYLQSNAGGTAMARIPPENAAARREAV
HHAVHATIMVGEASDRGAVALGLPSAGRKRKLRSPRPLPPEKPREPHNED
HTAGDVLAASGASTATDPAIAAAASVPTPVPSGYAGHAYYHPYFRQHWAP
PPSPFSPQMGDYWQGYPGVGSVPAMAGLSAPAGRWHGRGAEEQHRLRFSH
VAAPVAGGGSGTSSGGGGGGGGGEGDGGDNAGEEAERSGVGGGGSELGAE
TGGCGGGGGYTAATPDRGNGGEWSGGVDHRGGEGRAPLAWDWRQGPQHFE
HPPPPFDGEQLRSGILEADRRLRGLMADAMRIDQQIDSARAELDALMRQH
GFS* back to topmRNA from alignment at P-wetherbeei_contig5611:678..3574+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig5611.1.1 ID=mRNA_P-wetherbeei_contig5611.1.1|Name=mRNA_P-wetherbeei_contig5611.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2897bp|location=Sequence derived from alignment at P-wetherbeei_contig5611:678..3574+ (Phaeothamnion wetherbeei SAG_119_79)
TACGGTTCAAAGTAAGGCATATCGCCCTGCCTCCTCGCGCCGGCGCCTCC
GCAGGCCGCTGTGCATATTTGACGTTTGATATCTTCGGACATGGCATGAA
AGTTGTGATAAATTATTGCTCGTCGCTCTATTTTCGACTATGACAGAACG
CTTGTAGACCACCGCGGCGCGGAACTACTTTGTTAGGCTGTTGGGTTAGC
AGAGCGCGTCCGCTTTCTCGTGCTTTGTGAGAATGCCCTTTCAGCTCTCC
TCATCCTCCCTGCCGCTGCCCCGTTTGCTACTCTGTGGCATCTCTACTTA
TTGCTCTCGCAATCGCTATCCGTTCTTCTTCGACATCCTGTTTGCTCTCC
AAACGGCCGATACCAACCGTGCAGGCTTTACTGCCCTCACAACGGTGCCA
AAGCCATCGCCGCGTGAACGGCTCCGATGGAAACTCCGGCCGACGACGTC
GTCGAGAGGGCGGGCTACTTGCTATATGGCGGCGTTTTCGACATTGGGCT
CCTTTCGCTAGGAAAATGGTCAGATCAAAATCCCGACACTTTTGGCCTTT
GTTTCGCGGCGGGCGCGCGCGTCGACGAAGCGCAGCGGGCGACAACCGTT
GGCGATGGCGGCCGCGACATGGCTGTGGCGACGTTGTCGGCCCTTTCTTT
GCAGCTTCAAGTCGTCGAGAGCGTGATGGCCGCCGCCGCCGAAAGAAGCG
GGACGAACCTTCGCCGGGTGAGCGATCCTGCTGATGGAGGTGACGTAAGC
TCTGCAAAGAAACTAATAGCGTTCATTGGCTGGCCGTTATTTACCGTTTT
TTGGCCCACGTTTTGTCGCTCCCCTTCCAAAAAATACAGGCTCCAGGGCA
GCCGCGGCGGGAGTATAGCGGCTGCGTCGCCCTCTGGAACACTGCGTCTA
CGACAACGGTTCGCGGCGTCGTCCGCAACAAGCAGGTGCTGTACATAGGC
GAGTTTGACCTATCACGTTCCAGCGACGGCCGTGGGCTACGAGAACATAA
CAAATCGACAACGGTCGTCCGACCAGAAACAGTTGAGTTCGAGCCGCTTC
GTGAGCGACTGACTTAAGCCATCGCGTTTCGCGGCGACGCCTTGCTGTTC
ATATGTCCTTTTTGTTTTGGTGGAAACGCTTCTTGGCTGTGTTCTAGGAA
AAATTTCCAGTGGCCTTACTGGTCAACGCAAGCCAGCGCCGCCACGCTGA
GCGCAGTTGCGGTCTTTCACTTTTTACAGTTTTGCGTGATGACGGGCCGC
CAGTTTGGTCGGGAGGCCGCGTCGCCTGGAAGCGTCGCCAGCATTTCTCC
TTTCCGCTACATCCATTTCTATGTGTCCGGCCGATTAGCGAGTGGACTCA
ATAGGGAAGGGGGGCGTTTTTCATTATTCGTTCGCGCACTGGCTTGCTCG
CCAGCTTTTTCCGCGCATGTGCCACTTTTCGAAATCCCTCCCATGACGGC
TCCTCACCTCTTGTCGTGTCTTTTCCTCTTCGAAACCTCCAAACGTTGGG
CAAGTTGGCGGCATCGGCCTAAACCTCTGCATCACCAGCGCCGTTTAACC
CTGCAAGCCGCCAGGCGATGCTTCAGCGTCTTCTGAACCCTGCTTCCTTT
CCCTCAATTGGCCAATGATCTGCGCAACCGCGGCGGGGCCGGCATCTTCT
TTTGCTCAGACGCTTCGCTTCGACGAGAGGGGCGGCGGAGACCTCGCATA
TCTCCAGAGCAACGCCGGCGGCACGGCAATGGCCCGAATTCCGCCGGAGA
ACGCAGCCGCGCGCCGCGAGGCGGTCCACCACGCTGTACACGCCACCATC
ATGGTGGGAGAAGCCTCCGACCGCGGCGCCGTTGCTCTCGGTCTCCCGAG
CGCGGGCAGGAAGCGGAAGCTGCGGTCGCCACGGCCCCTTCCGCCCGAGA
AGCCCCGGGAGCCGCATAACGAGGACCACACTGCCGGTGATGTGCTGGCC
GCCAGCGGCGCCAGCACCGCCACTGATCCGGCAATCGCCGCTGCGGCTTC
GGTTCCTACTCCAGTACCAAGCGGGTACGCCGGTCACGCCTACTACCATC
CATATTTTCGGCAGCATTGGGCGCCCCCACCGTCCCCGTTCTCCCCACAA
ATGGGCGACTATTGGCAGGGTTACCCCGGAGTTGGAAGCGTGCCAGCGAT
GGCGGGCCTTTCGGCACCAGCCGGCAGGTGGCATGGGCGGGGAGCCGAAG
AGCAGCATCGTTTGCGCTTTTCGCACGTGGCTGCGCCGGTTGCAGGGGGA
GGGAGTGGCACCAGCAGCGGCGGCGGCGGCGGCGGCGGAGGCGGCGAAGG
CGACGGAGGAGACAACGCCGGCGAGGAAGCCGAGCGCAGTGGCGTCGGCG
GCGGCGGCAGTGAACTGGGAGCCGAAACGGGTGGGTGTGGAGGTGGAGGC
GGATACACGGCTGCGACTCCGGACCGCGGCAACGGAGGAGAGTGGAGTGG
GGGCGTAGACCACCGAGGCGGCGAAGGAAGAGCACCACTCGCGTGGGACT
GGCGGCAGGGGCCACAGCATTTTGAGCACCCACCCCCTCCATTTGATGGC
GAGCAATTGCGGTCAGGGATTCTAGAAGCTGACAGACGGCTGCGGGGCCT
GATGGCCGACGCAATGCGCATCGATCAGCAGATAGATAGCGCCAGGGCGG
AGCTCGACGCGTTGATGCGTCAGCACGGTTTTTCCTAGTCCCTATTTGGC
ATTGGTATGGCAGGGCATTCTTGGCCGGTCTCGCGAAAGCGAGTCGCAAG
CAAGTTTCGGCAGAGCCAACGGCCATGACAGGCGATAGAATGACGCGGGC
AGCACGAGGATGCGCCTTTATATGGGTGTTTCCAACACTCTGTCAAAGGT
GAAGAGATTCCATTCTCGTTATGCACGTTGGTTCGGTGGTAACATCT back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig5611:678..3574+ >mRNA_P-wetherbeei_contig5611.1.1 ID=mRNA_P-wetherbeei_contig5611.1.1|Name=mRNA_P-wetherbeei_contig5611.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1512bp|location=Sequence derived from alignment at P-wetherbeei_contig5611:678..3574+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAACTCCGGCCGACGACGTCGTCGAGAGGGCGGGCTACTTGCTATA
TGGCGGCGTTTTCGACATTGGGCTCCTTTCGCTAGGAAAATGGTCAGATC
AAAATCCCGACACTTTTGGCCTTTGTTTCGCGGCGGGCGCGCGCGTCGAC
GAAGCGCAGCGGGCGACAACCGTTGGCGATGGCGGCCGCGACATGGCTGT
GGCGACGTTGTCGGCCCTTTCTTTGCAGCTTCAAGTCGTCGAGAGCGTGA
TGGCCGCCGCCGCCGAAAGAAGCGGGACGAACCTTCGCCGGGCTCCAGGG
CAGCCGCGGCGGGAGTATAGCGGCTGCGTCGCCCTCTGGAACACTGCGTC
TACGACAACGGTTCGCGGCGTCGTCCGCAACAAGCAGGTGCTGTACATAG
GCGAGTTTGACCTATCACGTTCCAGCGACGGCCGTGGGCTACGAGAACAT
AACAAATCGACAACGGTCGTCCGACCAGAAACAACGCTTCGCTTCGACGA
GAGGGGCGGCGGAGACCTCGCATATCTCCAGAGCAACGCCGGCGGCACGG
CAATGGCCCGAATTCCGCCGGAGAACGCAGCCGCGCGCCGCGAGGCGGTC
CACCACGCTGTACACGCCACCATCATGGTGGGAGAAGCCTCCGACCGCGG
CGCCGTTGCTCTCGGTCTCCCGAGCGCGGGCAGGAAGCGGAAGCTGCGGT
CGCCACGGCCCCTTCCGCCCGAGAAGCCCCGGGAGCCGCATAACGAGGAC
CACACTGCCGGTGATGTGCTGGCCGCCAGCGGCGCCAGCACCGCCACTGA
TCCGGCAATCGCCGCTGCGGCTTCGGTTCCTACTCCAGTACCAAGCGGGT
ACGCCGGTCACGCCTACTACCATCCATATTTTCGGCAGCATTGGGCGCCC
CCACCGTCCCCGTTCTCCCCACAAATGGGCGACTATTGGCAGGGTTACCC
CGGAGTTGGAAGCGTGCCAGCGATGGCGGGCCTTTCGGCACCAGCCGGCA
GGTGGCATGGGCGGGGAGCCGAAGAGCAGCATCGTTTGCGCTTTTCGCAC
GTGGCTGCGCCGGTTGCAGGGGGAGGGAGTGGCACCAGCAGCGGCGGCGG
CGGCGGCGGCGGAGGCGGCGAAGGCGACGGAGGAGACAACGCCGGCGAGG
AAGCCGAGCGCAGTGGCGTCGGCGGCGGCGGCAGTGAACTGGGAGCCGAA
ACGGGTGGGTGTGGAGGTGGAGGCGGATACACGGCTGCGACTCCGGACCG
CGGCAACGGAGGAGAGTGGAGTGGGGGCGTAGACCACCGAGGCGGCGAAG
GAAGAGCACCACTCGCGTGGGACTGGCGGCAGGGGCCACAGCATTTTGAG
CACCCACCCCCTCCATTTGATGGCGAGCAATTGCGGTCAGGGATTCTAGA
AGCTGACAGACGGCTGCGGGGCCTGATGGCCGACGCAATGCGCATCGATC
AGCAGATAGATAGCGCCAGGGCGGAGCTCGACGCGTTGATGCGTCAGCAC
GGTTTTTCCTAG back to top
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