mRNA_P-wetherbeei_contig56017.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56017.1.1
Unique NamemRNA_P-wetherbeei_contig56017.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56017.1.1 vs. uniprot
Match: A0A7C4I9V0_9PROT (YgcG family protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C4I9V0_9PROT)

HSP 1 Score: 194 bits (493), Expect = 5.530e-59
Identity = 96/144 (66.67%), Postives = 122/144 (84.72%), Query Frame = 1
Query:   19 LVAIPALKARVTDTAQILDATARDALEAKLAAFEQAHGSQIAVLLVATTQPEPVEDFAHRVGEAWKIGRKGVGDGLLVIVARDDKRVRIDVARALEGAVPDLAAKRVIREEMAPRFAQGNYSGGLNAGLDALFKLIESESLPPP 450
            L+A+P L ARVTD A +L    + ALE KLAAFE AHG+Q+AVL+V +T+PEP+EDFAHRVGEAWKIGR G+GDG+LVIVA+DD+R+RIDVAR+LEGA+PD+ A+R+ RE M P F +G+Y+GGL+AGLDA+F+ IESE LP P
Sbjct:   37 LLAVPPL-ARVTDYAGVLSPQQKQALEDKLAAFEMAHGAQVAVLIVPSTKPEPIEDFAHRVGEAWKIGRAGIGDGVLVIVAKDDRRLRIDVARSLEGALPDVTARRIGREIMGPYFQRGDYAGGLSAGLDAIFQRIESEGLPAP 179          
BLAST of mRNA_P-wetherbeei_contig56017.1.1 vs. uniprot
Match: A0A515DG33_9BURK (YgcG family protein n=1 Tax=Rhodoferax sediminis TaxID=2509614 RepID=A0A515DG33_9BURK)

HSP 1 Score: 184 bits (468), Expect = 3.170e-55
Identity = 94/155 (60.65%), Postives = 115/155 (74.19%), Query Frame = 1
Query:   16 SLVAIPALKARVTDTAQILDATARDALEAKLAAFEQAHGSQIAVLLVATTQPEPVEDFAHRVGEAWKIGRKGVGDGLLVIVARDDKRVRIDVARALEGAVPDLAAKRVIREEMAPRFAQGNYSGGLNAGLDALFKLIESESLPPPKGGQAAPAQP 480
            SL A+PAL A V DT   LDA  + ALEAKLAA EQ  GSQ+ VL+V TTQPE +  +A+RVG  WKIGRKGVGDGLL+IVA+DD+RVRI+VA+ LEGA+PDLAA ++I + + P F QG+Y+GGLNAG D +  LI  E LP P   +AA A P
Sbjct:   29 SLQAVPALTAHVIDTTGTLDAGQKQALEAKLAALEQTKGSQVVVLMVGTTQPEDIASYANRVGNTWKIGRKGVGDGLLLIVAKDDRRVRIEVAKTLEGAIPDLAASQIIEQAITPAFRQGDYAGGLNAGTDQIIALINGEPLPAPAPRRAAGAGP 183          
BLAST of mRNA_P-wetherbeei_contig56017.1.1 vs. uniprot
Match: UPI000A1751AA (TPM domain-containing protein n=1 Tax=Derxia lacustris TaxID=764842 RepID=UPI000A1751AA)

HSP 1 Score: 183 bits (465), Expect = 1.120e-54
Identity = 97/149 (65.10%), Postives = 118/149 (79.19%), Query Frame = 1
Query:   19 LVAIPALKARVTDTAQILDATARDALEAKLAAFEQAHGSQIAVLLVATTQPEPVEDFAHRVGEAWKIGRKGVGDGLLVIVARDDKRVRIDVARALEGAVPDLAAKRVIREEMAPRFAQGNYSGGLNAGLDALFKLIESESLPPPKGGQA 465
            ++A+P L ARVTDT   L    R AL+AKLAAFE AHGSQIAV+++ TTQPEP+E F +R+GEAWKIGR   GDGLL+IVARDDKRVRI+VARALEGAVPD AA RVIRE++ P F++G+Y GG++  LDALF  IE+E L P +G  A
Sbjct:   37 VIALPPL-ARVTDTTGTLTPEQRAALDAKLAAFELAHGSQIAVVMLPTTQPEPIEMFGNRLGEAWKIGRAKEGDGLLLIVARDDKRVRIEVARALEGAVPDAAAARVIREQLGPAFSKGDYYGGIDRALDALFARIEAEGLAPGEGKAA 184          
BLAST of mRNA_P-wetherbeei_contig56017.1.1 vs. uniprot
Match: A0A2E9C150_9BURK (TPM_phosphatase domain-containing protein n=4 Tax=unclassified Variovorax TaxID=663243 RepID=A0A2E9C150_9BURK)

HSP 1 Score: 182 bits (461), Expect = 4.360e-54
Identity = 91/141 (64.54%), Postives = 109/141 (77.30%), Query Frame = 1
Query:   28 IPALKARVTDTAQILDATARDALEAKLAAFEQAHGSQIAVLLVATTQPEPVEDFAHRVGEAWKIGRKGVGDGLLVIVARDDKRVRIDVARALEGAVPDLAAKRVIREEMAPRFAQGNYSGGLNAGLDALFKLIESESLPPP 450
            +PAL ARV D    LDA  R  LE KLAAFEQ  GSQIAVL+V TTQPE +E +  RVG+AWKIGRKGVGDGLLVIVA+DD+R+RI  A+ALEGAVPDLAA R++ EEM PRF  G+++GG+NA +D L  L++ E LP P
Sbjct:   33 VPALTARVIDQTGTLDAAQRAGLETKLAAFEQRKGSQIAVLMVPTTQPEDIESYTQRVGDAWKIGRKGVGDGLLVIVAKDDRRMRIAPAKALEGAVPDLAAARIVDEEMKPRFRNGDFAGGINAAVDRLIGLVDGEPLPEP 173          
BLAST of mRNA_P-wetherbeei_contig56017.1.1 vs. uniprot
Match: A0A8B6XAM9_9BURK (TPM domain-containing protein n=2 Tax=Derxia gummosa TaxID=203699 RepID=A0A8B6XAM9_9BURK)

HSP 1 Score: 181 bits (459), Expect = 1.990e-53
Identity = 92/150 (61.33%), Postives = 119/150 (79.33%), Query Frame = 1
Query:   19 LVAIPALKARVTDTAQILDATARDALEAKLAAFEQAHGSQIAVLLVATTQPEPVEDFAHRVGEAWKIGRKGVGDGLLVIVARDDKRVRIDVARALEGAVPDLAAKRVIREEMAPRFAQGNYSGGLNAGLDALFKLIESESLPPPKGGQAA 468
            LVA+P L ARVTDT   L    R+AL+ KLA FE AHGSQIAV+++A+T+PEP+E F +R+GEAWK+GRK  GDGLL+IVARDDKRVRI+VARALEGAVPD AA R+IRE + P F++G++ GG++  LDA+F+ IE+E L P +G   +
Sbjct:   59 LVALPPL-ARVTDTTGTLTPAQREALDHKLAGFELAHGSQIAVVMLASTKPEPIEMFGNRLGEAWKLGRKTEGDGLLLIVARDDKRVRIEVARALEGAVPDAAAARIIRERLGPAFSKGDFYGGIDGALDAIFERIEAEGLTPGQGADGS 207          
BLAST of mRNA_P-wetherbeei_contig56017.1.1 vs. uniprot
Match: A0A2P9GVD4_9BURK (TPM_phosphatase domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A2P9GVD4_9BURK)

HSP 1 Score: 179 bits (455), Expect = 2.310e-53
Identity = 90/149 (60.40%), Postives = 116/149 (77.85%), Query Frame = 1
Query:   19 LVAIPALKARVTDTAQILDATARDALEAKLAAFEQAHGSQIAVLLVATTQPEPVEDFAHRVGEAWKIGRKGVGDGLLVIVARDDKRVRIDVARALEGAVPDLAAKRVIREEMAPRFAQGNYSGGLNAGLDALFKLIESESLPPPKGGQA 465
            L+ +P L ARV+D    L    R ALE+KLAAFE  HGSQIA+++VA+T+PEP+EDFAHRVG+AWKIGR+G+GDG+L++VA  D+  RIDVAR LEGA+PD+ A+R+IR++MAP FA  +Y+GGL A LDALF LI +E L P  G  A
Sbjct:   31 LLLVPPL-ARVSDPGGFLAPADRAALESKLAAFEATHGSQIAIVMVASTKPEPIEDFAHRVGDAWKIGRRGIGDGVLIVVAVQDRTARIDVARRLEGAIPDVTARRLIRDQMAPHFASKDYAGGLTATLDALFGLIAAEGLAPGTGDAA 178          
BLAST of mRNA_P-wetherbeei_contig56017.1.1 vs. uniprot
Match: A0A1S9D213_9GAMM (TPM_phosphatase domain-containing protein n=1 Tax=Chromatiales bacterium USCg_Taylor TaxID=1934255 RepID=A0A1S9D213_9GAMM)

HSP 1 Score: 179 bits (455), Expect = 3.490e-53
Identity = 90/146 (61.64%), Postives = 114/146 (78.08%), Query Frame = 1
Query:    7 QSGSLVAIPALKARVTDTAQILDATARDALEAKLAAFEQAHGSQIAVLLVATTQPEPVEDFAHRVGEAWKIGRKGVGDGLLVIVARDDKRVRIDVARALEGAVPDLAAKRVIREEMAPRFAQGNYSGGLNAGLDALFKLIESESLP 444
            Q   L+A+P L AR+TD A +L  + + ALE KLAAFE AHGSQIA+++V + +PEP+EDF++RVG  WK+GR  VGDGLL++VA  DKRVRI+V RALEGAVPD  AKR+IRE++APRF   +Y+GGLNA LDA+FK IE   LP
Sbjct:   29 QPDGLLAVPPL-ARITDYADVLSPSDKRALEDKLAAFETAHGSQIAIVVVPSVKPEPIEDFSNRVGNTWKLGRADVGDGLLIVVAVQDKRVRIEVFRALEGAVPDATAKRIIREQIAPRFKTNDYAGGLNAALDAIFKQIEGGGLP 173          
BLAST of mRNA_P-wetherbeei_contig56017.1.1 vs. uniprot
Match: T1XHS7_VARPD (TPM_phosphatase domain-containing protein n=2 Tax=Variovorax paradoxus TaxID=34073 RepID=T1XHS7_VARPD)

HSP 1 Score: 179 bits (454), Expect = 4.190e-53
Identity = 92/150 (61.33%), Postives = 110/150 (73.33%), Query Frame = 1
Query:    1 WGQSGSLVAIPALKARVTDTAQILDATARDALEAKLAAFEQAHGSQIAVLLVATTQPEPVEDFAHRVGEAWKIGRKGVGDGLLVIVARDDKRVRIDVARALEGAVPDLAAKRVIREEMAPRFAQGNYSGGLNAGLDALFKLIESESLPPP 450
            W Q   L+ +PAL ARV D    LDA  R  L+ KLAAFEQ  GSQI VL+V TT PE +E +A RVG+AWKIGRK VGDGLLVIVA+DD+R+RI  A+ALEGAVPDLAA R+I EEM PRF   +++GGLNA +D L  L++ E LP P
Sbjct:   28 WAQG--LLPVPALTARVIDQTGTLDAAQRTGLDTKLAAFEQRKGSQIVVLMVPTTAPEDIESYAQRVGDAWKIGRKNVGDGLLVIVAKDDRRMRIATAKALEGAVPDLAASRIIDEEMKPRFRNNDFAGGLNAAVDRLIGLVDGEPLPEP 175          
BLAST of mRNA_P-wetherbeei_contig56017.1.1 vs. uniprot
Match: A0A7V9LJF2_9BURK (TPM domain-containing protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A7V9LJF2_9BURK)

HSP 1 Score: 180 bits (457), Expect = 4.890e-53
Identity = 91/145 (62.76%), Postives = 115/145 (79.31%), Query Frame = 1
Query:   22 VAIPALKARVTDTAQILDATARDALEAKLAAFEQAHGSQIAVLLVATTQPEPVEDFAHRVGEAWKIGRKGVGDGLLVIVARDDKRVRIDVARALEGAVPDLAAKRVIREEMAPRFAQGNYSGGLNAGLDALFKLIESESLPPPKG 456
            +A+P L ARVTDTA +LDA AR  LEAKLAAFEQA GSQIAV++V +T+PEP+ DFA+RVG  WKIGR GVGDG+L+ VA  D+R  I +AR+LEGA+PD+ A R+ RE+M P FA+G+++GGLNAG+DA+   IE E LP P G
Sbjct:   74 LAVPPL-ARVTDTAGVLDAAARSQLEAKLAAFEQARGSQIAVIVVPSTKPEPIADFANRVGGTWKIGRAGVGDGVLIAVAVGDRRSWISIARSLEGALPDIIATRITREQMGPYFAKGDFAGGLNAGVDAVISRIEGEGLPTPAG 217          
BLAST of mRNA_P-wetherbeei_contig56017.1.1 vs. uniprot
Match: UPI0016A30A9A (TPM domain-containing protein n=1 Tax=Azoarcus sp. TTM-91 TaxID=2691581 RepID=UPI0016A30A9A)

HSP 1 Score: 176 bits (445), Expect = 6.440e-53
Identity = 92/151 (60.93%), Postives = 113/151 (74.83%), Query Frame = 1
Query:   16 SLVAIPALKARVTDTAQILDATARDALEAKLAAFEQAHGSQIAVLLVATTQPEPVEDFAHRVGEAWKIGRKGVGDGLLVIVARDDKRVRIDVARALEGAVPDLAAKRVIREEMAPRFAQGNYSGGLNAGLDALFKLIESESLPPPKGGQAA 468
            +L A+PAL ARV D    L A  R ALE KLAAFEQ  GSQI VLLVATT PE +  +A RV ++WKIGRK VGDGLL++VA++D++VRI+VARALEGAVPDLAA R+I   + P F QG+++GG++AG+DAL  LI  E LP P  G AA
Sbjct:   33 ALQAVPALSARVIDQTATLSAPQRQALEEKLAAFEQERGSQIVVLLVATTAPEDIAAYAFRVADSWKIGRKDVGDGLLLVVAKNDRKVRIEVARALEGAVPDLAAYRIIDRYITPAFRQGDFAGGIDAGVDALAALIRGEELPLPARGAAA 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56017.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4I9V0_9PROT5.530e-5966.67YgcG family protein n=2 Tax=Betaproteobacteria bac... [more]
A0A515DG33_9BURK3.170e-5560.65YgcG family protein n=1 Tax=Rhodoferax sediminis T... [more]
UPI000A1751AA1.120e-5465.10TPM domain-containing protein n=1 Tax=Derxia lacus... [more]
A0A2E9C150_9BURK4.360e-5464.54TPM_phosphatase domain-containing protein n=4 Tax=... [more]
A0A8B6XAM9_9BURK1.990e-5361.33TPM domain-containing protein n=2 Tax=Derxia gummo... [more]
A0A2P9GVD4_9BURK2.310e-5360.40TPM_phosphatase domain-containing protein n=1 Tax=... [more]
A0A1S9D213_9GAMM3.490e-5361.64TPM_phosphatase domain-containing protein n=1 Tax=... [more]
T1XHS7_VARPD4.190e-5361.33TPM_phosphatase domain-containing protein n=2 Tax=... [more]
A0A7V9LJF2_9BURK4.890e-5362.76TPM domain-containing protein n=1 Tax=Burkholderia... [more]
UPI0016A30A9A6.440e-5360.93TPM domain-containing protein n=1 Tax=Azoarcus sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56017contigP-wetherbeei_contig56017:30..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog595537.Varpa_5493
PFAMsTPM_phosphatase
Model size480
Max annot lvl28216|Betaproteobacteria
KEGG koko:K06872
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.59e-53
EggNOG OGsCOG1512@1|root,COG1512@2|Bacteria,1PB41@1224|Proteobacteria,2VMNV@28216|Betaproteobacteria,4AAND@80864|Comamonadaceae
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-09_003760.1
DescriptionTPM domain
Cds size480
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.6905143-CDS-P-wetherbeei_contig56017:29..5091683186833.6905143-CDS-P-wetherbeei_contig56017:29..509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56017 30..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56017.1.1prot_P-wetherbeei_contig56017.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56017 30..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56017.1.1

>prot_P-wetherbeei_contig56017.1.1 ID=prot_P-wetherbeei_contig56017.1.1|Name=mRNA_P-wetherbeei_contig56017.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
WGQSGSLVAIPALKARVTDTAQILDATARDALEAKLAAFEQAHGSQIAVL
LVATTQPEPVEDFAHRVGEAWKIGRKGVGDGLLVIVARDDKRVRIDVARA
LEGAVPDLAAKRVIREEMAPRFAQGNYSGGLNAGLDALFKLIESESLPPP
KGGQAAPAQP
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mRNA from alignment at P-wetherbeei_contig56017:30..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56017.1.1 ID=mRNA_P-wetherbeei_contig56017.1.1|Name=mRNA_P-wetherbeei_contig56017.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig56017:30..509- (Phaeothamnion wetherbeei SAG_119_79)
TGGGGACAGAGCGGCTCGCTTGTCGCCATCCCGGCACTCAAGGCGCGTGT CACCGACACGGCGCAGATTCTGGACGCGACGGCGCGCGATGCGCTGGAGG CGAAGCTGGCGGCATTCGAACAGGCGCATGGCAGCCAGATCGCGGTCCTG TTGGTGGCCACAACCCAGCCTGAACCCGTGGAGGATTTCGCCCACCGGGT TGGCGAAGCCTGGAAAATCGGCCGCAAGGGCGTGGGAGACGGACTGCTCG TCATAGTCGCGCGCGACGACAAACGCGTGCGCATCGACGTGGCGCGTGCC CTTGAGGGCGCGGTACCGGATCTCGCCGCCAAACGCGTGATTCGCGAAGA AATGGCACCGCGTTTCGCACAGGGCAATTATTCCGGCGGACTCAATGCCG GCCTGGACGCACTTTTCAAGTTGATCGAAAGCGAGTCCCTCCCGCCGCCG AAAGGCGGTCAGGCGGCGCCGGCGCAGCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56017:30..509-

>mRNA_P-wetherbeei_contig56017.1.1 ID=mRNA_P-wetherbeei_contig56017.1.1|Name=mRNA_P-wetherbeei_contig56017.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig56017:30..509- (Phaeothamnion wetherbeei SAG_119_79)
TGGGGACAGAGCGGCTCGCTTGTCGCCATCCCGGCACTCAAGGCGCGTGT
CACCGACACGGCGCAGATTCTGGACGCGACGGCGCGCGATGCGCTGGAGG
CGAAGCTGGCGGCATTCGAACAGGCGCATGGCAGCCAGATCGCGGTCCTG
TTGGTGGCCACAACCCAGCCTGAACCCGTGGAGGATTTCGCCCACCGGGT
TGGCGAAGCCTGGAAAATCGGCCGCAAGGGCGTGGGAGACGGACTGCTCG
TCATAGTCGCGCGCGACGACAAACGCGTGCGCATCGACGTGGCGCGTGCC
CTTGAGGGCGCGGTACCGGATCTCGCCGCCAAACGCGTGATTCGCGAAGA
AATGGCACCGCGTTTCGCACAGGGCAATTATTCCGGCGGACTCAATGCCG
GCCTGGACGCACTTTTCAAGTTGATCGAAAGCGAGTCCCTCCCGCCGCCG
AAAGGCGGTCAGGCGGCGCCGGCGCAGCCT
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