mRNA_P-wetherbeei_contig55953.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55953.1.1
Unique NamemRNA_P-wetherbeei_contig55953.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55953.1.1 vs. uniprot
Match: A0A1Q4DR64_9PSEU (DUF2470 domain-containing protein n=1 Tax=Pseudonocardia sp. 73-21 TaxID=1895809 RepID=A0A1Q4DR64_9PSEU)

HSP 1 Score: 99.0 bits (245), Expect = 4.400e-23
Identity = 58/109 (53.21%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   28 PSHAEVSRTLLENAACATLSTLTADGFPFGSLVSFAIDPQGNVLLLLSDLAEHTQNLRNNPKASLMVGQKTSGDPLAGGRVTLLGEIG--SPTNLQVARASYLERHPEA 348
            PS AE++RTL+  A  A LST+   GFPFGSLV+ A+D  G  LLLLS+LAEHT+NL  +P+ASLM  Q   GDPLA GRVT++GE+   S        A Y + HP A
Sbjct:    8 PSDAELARTLIAAAPTAALSTIGEGGFPFGSLVTHAVDAAGRPLLLLSELAEHTRNLVADPRASLMAVQDGDGDPLALGRVTVVGEVSVLSGDERTATLAVYRDTHPGA 116          
BLAST of mRNA_P-wetherbeei_contig55953.1.1 vs. uniprot
Match: A0A4Y3WKZ5_9PSEU (Pyridoxamine 5'-phosphate oxidase-related n=1 Tax=Pseudonocardia hydrocarbonoxydans TaxID=76726 RepID=A0A4Y3WKZ5_9PSEU)

HSP 1 Score: 97.4 bits (241), Expect = 1.380e-22
Identity = 52/90 (57.78%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   28 PSHAEVSRTLLENAACATLSTLTADGFPFGSLVSFAIDPQGNVLLLLSDLAEHTQNLRNNPKASLMVGQKTSGDPLAGGRVTLLGEIGSP 297
            P+ AE+ RTL        LSTL  DGFPFGS+VS A+D  G  LLLLSDLAEHT+NL  +P+ASL+V Q+  GDPLA  RVTL+G +  P
Sbjct:    5 PTDAELGRTLATTVHTGALSTLGRDGFPFGSVVSHALDATGRPLLLLSDLAEHTRNLITDPRASLLVAQQDPGDPLALSRVTLIGPVAQP 94          
BLAST of mRNA_P-wetherbeei_contig55953.1.1 vs. uniprot
Match: A0A2E7A5J1_9ACTN (DUF2470 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7A5J1_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 1.600e-22
Identity = 51/107 (47.66%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   28 PSHAEVSRTLLENAACATLSTLTADGFPFGSLVSFAIDPQGNVLLLLSDLAEHTQNLRNNPKASLMVGQK--TSGDPLAGGRVTLLGEIGSPTNLQVARASYLERHP 342
            PS AE+SR+L+  +A   LSTLT +G+P+GSLVS  +D  GN ++L+SDLAEHT+N R++ +ASL+V     + GDPL G R+TL+G +      +    SYL +HP
Sbjct:   25 PSDAELSRSLMATSATGVLSTLTTEGYPYGSLVSHIVDNAGNPVILISDLAEHTKNGRSDSRASLLVNASHTSEGDPLIGARLTLVGRLSLVEGEKALEESYLAKHP 131          
BLAST of mRNA_P-wetherbeei_contig55953.1.1 vs. uniprot
Match: A0A4V0NDP6_SORCE (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A4V0NDP6_SORCE)

HSP 1 Score: 97.8 bits (242), Expect = 1.790e-22
Identity = 59/116 (50.86%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   19 ASSPSHAEVSRTLLENAACATLSTLTAD--GFPFGSLVSFAIDPQGNVLLLLSDLAEHTQNLRNNPKASLMVGQKTSG--DPLAGGRVTLLGEIG--SPTNLQVARASYLERHPEA 348
            A++PSHAE  RTL + A  ATL T+  D  G+P+GSLV+ A DPQG +LLLLS LAEHT NL+  P+ASL++ +   G  DPLA GR+TLLG      P      R  +L  HP A
Sbjct:   23 ATAPSHAERCRTLAQQARTATLCTIARDPAGYPYGSLVTVAADPQGRLLLLLSALAEHTGNLKARPEASLLLAEPAQGRADPLALGRMTLLGPCRPLDPAEAAATRTRFLAAHPRA 138          
BLAST of mRNA_P-wetherbeei_contig55953.1.1 vs. uniprot
Match: A0A1Z9JQM6_9ACTN (DUF2470 domain-containing protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A1Z9JQM6_9ACTN)

HSP 1 Score: 97.4 bits (241), Expect = 2.250e-22
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   28 PSHAEVSRTLLENAACATLSTLTADGFPFGSLVSFAIDPQGNVLLLLSDLAEHTQNLRNNPKASLMVGQKTS--GDPLAGGRVTLLGEIGSPTNLQVARASYLERHPEA 348
            PS AE+SRTLL +     LSTLT DG+P+GSLVS+  D  GN+LLL+SDLAEHT+N  ++ ++S +V   TS   DPL G R+TL+G I    +   +   YL +HP A
Sbjct:   25 PSDAELSRTLLSSNDSGVLSTLTEDGYPYGSLVSYVPDLDGNLLLLISDLAEHTKNAHSDSRSSFLVSNATSQNADPLTGPRLTLVGSIALAESPDKSEELYLAQHPYA 133          
BLAST of mRNA_P-wetherbeei_contig55953.1.1 vs. uniprot
Match: A0A2V7I6A8_9BACT (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7I6A8_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 2.930e-22
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   28 PSHAEVSRTLLENAACATLSTLTA--DGFPFGSLVSFAIDPQGNVLLLLSDLAEHTQNLRNNPKASLMVGQKTSG-DPLAGGRVTLLGEIGS--PTNLQVARASYLERHPEA 348
            P++AE +RTL+E     TL TL+    G PFGSL+ +A+D +G  L L+S LA HTQNL  +P+ASL V + ++  DPLA GRVTL+GE G   P ++  AR +YL RHP A
Sbjct:   19 PTYAERARTLVERGQTGTLCTLSRRHPGHPFGSLMPYALDGRGRPLFLISTLAMHTQNLEGDPRASLFVAESSAAEDPLAAGRVTLMGEAGRVPPADIAGARVAYLGRHPNA 130          
BLAST of mRNA_P-wetherbeei_contig55953.1.1 vs. uniprot
Match: A0A4R1L636_9BACT (DUF2470 domain-containing protein n=1 Tax=Acidipila rosea TaxID=768535 RepID=A0A4R1L636_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 3.340e-22
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   28 PSHAEVSRTLLENAACATLSTLTA--DGFPFGSLVSFAIDPQGNVLLLLSDLAEHTQNLRNNPKASLMVGQK-TSGDPLAGGRVTLLGEIGSPT---NLQVARASYLERHPEA 348
            PSHAE +RTLL  A   TLST++   +GFPFGSL+ +A+D +G  + L+S++A HTQNL+ NP+ASL VGQ  T GDPL   R TL+G +  P     L  AR  YL RHP +
Sbjct:   26 PSHAERARTLLSLATQGTLSTVSRRHEGFPFGSLMPYALDAEGRPVFLISNMAMHTQNLKANPRASLFVGQSATDGDPLGVARATLVGAV-EPVPEGELASAREIYLARHPNS 137          
BLAST of mRNA_P-wetherbeei_contig55953.1.1 vs. uniprot
Match: A0A2E1CQQ6_9ACTN (DUF2470 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2E1CQQ6_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 3.530e-22
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   28 PSHAEVSRTLLENAACATLSTLTADGFPFGSLVSFAIDPQGNVLLLLSDLAEHTQNLRNNPKASLMVGQKT-SGDPLAGGRVTLLGEIGSPTNLQVARASYLERHPEA 348
            PS AE+SRTL+ ++  ATLSTLT  GFP+GS+VSF  D  GN ++L+SD+AEHT N RN+ KAS+++     +GDPL   R+TL+G +       V R  YL +H  A
Sbjct:   24 PSDAELSRTLVASSGTATLSTLTPTGFPYGSVVSFINDNXGNPVILISDMAEHTINARNDEKASMLISXPAGNGDPLGKARLTLIGTLHILDEPXVERKDYLSKHKHA 131          
BLAST of mRNA_P-wetherbeei_contig55953.1.1 vs. uniprot
Match: A0A2E9LBK4_9ACTN (DUF2470 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E9LBK4_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 3.530e-22
Identity = 49/108 (45.37%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   28 PSHAEVSRTLLENAACATLSTLTADGFPFGSLVSFAIDPQGNVLLLLSDLAEHTQNLRNNPKASLMVGQKTS-GDPLAGGRVTLLGEIGSPTNLQVARASYLERHPEA 348
            PS AE+SRTL+ ++   TLSTLT++G+P+GS+VS+  D +GN ++L+SD+AEHT N RN+ +AS+++ + +  GDPL   R+TL+G +    N    R  YL +H  A
Sbjct:   24 PSDAELSRTLVASSGTGTLSTLTSEGYPYGSIVSYIHDDEGNPVILISDMAEHTINARNDQRASMLISEPSGEGDPLGKARLTLVGTLHLLDNPTAEREEYLTKHKHA 131          
BLAST of mRNA_P-wetherbeei_contig55953.1.1 vs. uniprot
Match: A0A2E4GPX3_9ACTN (DUF2470 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4GPX3_9ACTN)

HSP 1 Score: 96.7 bits (239), Expect = 4.440e-22
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 1
Query:   28 PSHAEVSRTLLENAACATLSTLTADGFPFGSLVSFAIDPQGNVLLLLSDLAEHTQNLRNNPKASLMVGQKTSGD--PLAGGRVTLLGEIGSPTNLQVARASYLERHPEA 348
            PS A +SR+L+ ++A   LSTLT +G+P+GSLVS  +D  GN ++L+SDLAEHT+N R + +ASL+V    + D  PL G R+TL+G++         +A+YLE+HP A
Sbjct:   25 PSDAXLSRSLMASSAAGVLSTLTTEGYPYGSLVSHMVDGDGNPIILISDLAEHTKNARLDNRASLLVDTSRAADEDPLVGARLTLIGQMNLLAASDDLQATYLEKHPYA 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55953.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q4DR64_9PSEU4.400e-2353.21DUF2470 domain-containing protein n=1 Tax=Pseudono... [more]
A0A4Y3WKZ5_9PSEU1.380e-2257.78Pyridoxamine 5'-phosphate oxidase-related n=1 Tax=... [more]
A0A2E7A5J1_9ACTN1.600e-2247.66DUF2470 domain-containing protein n=1 Tax=Acidimic... [more]
A0A4V0NDP6_SORCE1.790e-2250.86Pyridoxamine 5'-phosphate oxidase n=1 Tax=Sorangiu... [more]
A0A1Z9JQM6_9ACTN2.250e-2249.54DUF2470 domain-containing protein n=2 Tax=Actinoba... [more]
A0A2V7I6A8_9BACT2.930e-2250.00Pyridoxamine 5'-phosphate oxidase n=1 Tax=Candidat... [more]
A0A4R1L636_9BACT3.340e-2251.33DUF2470 domain-containing protein n=1 Tax=Acidipil... [more]
A0A2E1CQQ6_9ACTN3.530e-2249.07DUF2470 domain-containing protein n=1 Tax=Actinomy... [more]
A0A2E9LBK4_9ACTN3.530e-2245.37DUF2470 domain-containing protein n=1 Tax=Acidimic... [more]
A0A2E4GPX3_9ACTN4.440e-2246.79DUF2470 domain-containing protein n=2 Tax=Acidimic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55953contigP-wetherbeei_contig55953:3..350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1254432.SCE1572_25325
PFAMsDUF2470,Pyrid_oxidase_2
Model size348
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K07226
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.26e-21
EggNOG OGsCOG0748@1|root,COG0748@2|Bacteria,1RFVC@1224|Proteobacteria,42UK2@68525|delta/epsilon subdivisions,2WR4V@28221|Deltaproteobacteria,2Z1V6@29|Myxococcales
DescriptionPyridoxamine 5'-phosphate oxidase
Cds size348
COG categoryP
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186832.4859416-CDS-P-wetherbeei_contig55953:2..3501683186832.4859416-CDS-P-wetherbeei_contig55953:2..350Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55953 3..350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55953.1.1prot_P-wetherbeei_contig55953.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55953 3..350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55953.1.1

>prot_P-wetherbeei_contig55953.1.1 ID=prot_P-wetherbeei_contig55953.1.1|Name=mRNA_P-wetherbeei_contig55953.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MLTKRLASSPSHAEVSRTLLENAACATLSTLTADGFPFGSLVSFAIDPQG
NVLLLLSDLAEHTQNLRNNPKASLMVGQKTSGDPLAGGRVTLLGEIGSPT
NLQVARASYLERHPEA
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mRNA from alignment at P-wetherbeei_contig55953:3..350-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55953.1.1 ID=mRNA_P-wetherbeei_contig55953.1.1|Name=mRNA_P-wetherbeei_contig55953.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig55953:3..350- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACCAAACGCCTCGCCTCTTCGCCCTCGCACGCCGAGGTCAGCCG CACGCTGCTGGAAAACGCCGCCTGCGCAACCCTGAGCACACTGACCGCAG ACGGGTTCCCATTTGGGTCTCTGGTGAGCTTTGCCATCGACCCCCAGGGC AACGTGCTCCTCCTCCTCAGCGACCTCGCTGAACATACGCAGAACCTGCG TAACAACCCCAAAGCTTCTCTCATGGTAGGCCAGAAGACCAGCGGCGATC CGCTGGCAGGCGGCCGTGTGACGCTCCTGGGTGAAATCGGCTCCCCGACG AATCTCCAAGTAGCTCGAGCCAGTTATCTCGAGCGCCACCCCGAGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55953:3..350-

>mRNA_P-wetherbeei_contig55953.1.1 ID=mRNA_P-wetherbeei_contig55953.1.1|Name=mRNA_P-wetherbeei_contig55953.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig55953:3..350- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACCAAACGCCTCGCCTCTTCGCCCTCGCACGCCGAGGTCAGCCG
CACGCTGCTGGAAAACGCCGCCTGCGCAACCCTGAGCACACTGACCGCAG
ACGGGTTCCCATTTGGGTCTCTGGTGAGCTTTGCCATCGACCCCCAGGGC
AACGTGCTCCTCCTCCTCAGCGACCTCGCTGAACATACGCAGAACCTGCG
TAACAACCCCAAAGCTTCTCTCATGGTAGGCCAGAAGACCAGCGGCGATC
CGCTGGCAGGCGGCCGTGTGACGCTCCTGGGTGAAATCGGCTCCCCGACG
AATCTCCAAGTAGCTCGAGCCAGTTATCTCGAGCGCCACCCCGAGGCG
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