mRNA_P-wetherbeei_contig5579.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5579.1.1
Unique NamemRNA_P-wetherbeei_contig5579.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5579.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5579contigP-wetherbeei_contig5579:108..2160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1388
Hectar predicted targeting categoryother localisation
Exons4
Cds size822
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.3488915-CDS-P-wetherbeei_contig5579:107..5031683186830.3488915-CDS-P-wetherbeei_contig5579:107..503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5579 108..503 -
1683186830.360005-CDS-P-wetherbeei_contig5579:748..9761683186830.360005-CDS-P-wetherbeei_contig5579:748..976Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5579 749..976 -
1683186830.3689144-CDS-P-wetherbeei_contig5579:1288..14861683186830.3689144-CDS-P-wetherbeei_contig5579:1288..1486Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5579 1289..1486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.3769846-UTR-P-wetherbeei_contig5579:1486..15041683186830.3769846-UTR-P-wetherbeei_contig5579:1486..1504Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5579 1487..1504 -
1683186830.3855276-UTR-P-wetherbeei_contig5579:1612..21601683186830.3855276-UTR-P-wetherbeei_contig5579:1612..2160Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5579 1613..2160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5579.1.1prot_P-wetherbeei_contig5579.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5579 108..1486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5579.1.1

>prot_P-wetherbeei_contig5579.1.1 ID=prot_P-wetherbeei_contig5579.1.1|Name=mRNA_P-wetherbeei_contig5579.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=274bp
MHGGRKGPHPFVDRSSSLVRPVQASPDELWAAAFAADAGAAAVLLERGVS
GGVNVKNEYGQTALHLASSCADGDRAAVAAVLLPAGANARSIDHAGDTPL
HVAVSATRAVSVGATRAALSGGISGGGGGGAVSASSGALAAQLLQQREEA
LVGVLLDAGADPFAVGSRGWTPLHIAAFVGAERVTCMLLAAAGTPASFAG
FTGSGSAIYGGTYCCGAIYSGVEMAGGIAAGTGDSASAAVTIREGDGAVT
HLPNYHAAGRDPADAGAAACGDSN
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mRNA from alignment at P-wetherbeei_contig5579:108..2160-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5579.1.1 ID=mRNA_P-wetherbeei_contig5579.1.1|Name=mRNA_P-wetherbeei_contig5579.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2053bp|location=Sequence derived from alignment at P-wetherbeei_contig5579:108..2160- (Phaeothamnion wetherbeei SAG_119_79)
GCGTTGCCACGAACGACGCCAAGTTCCTTGCCATCGGGCACTAAATTTCC
GACCGGCTCGACGAAGAGGGGAAACCGGGGACTGAAAGCGGGTGCTCTGG
CGCTAAAACTGGCCCTCTGGAGCGTCTGTCATGTCGTGATTCCATGCCCA
ACACACCCAATTGAGAATTGAGGAAACACCTTTCGCAATCAACAAAAGCT
CAACCACCTTGACAAATACGATCACCTTCACTGCGATCGGCCCGAAGACT
GCCCTGACACACCAACGTCTCGCCGTGACGGGCAAAATAGAAGTTGTGAT
TAGCTATTTCTTCTCGCGAAATTTAAGATGCCAGCACTTTTCGCGATCCC
CGTGCTGCGGCACCGGGGACAGTGAGAGGTTTACGAGGGGGTGGTTGTTA
CTTTCAACTATTTAATGGCTTTCAATTTGTATTCCAAAGATATTCGGGAG
GAAGCGCTCCGTTCGCTGCTGTCGACTTGCTGGATGAAGGAGATGTAAAG
GGCTGCACCCACATTGCCAGCATCCTCCGGCAACAGTTCCAAAGGCTGGT
GAGATGAGAACACTTTCTTCATCGTTATCATTTTTTTTGGCCCCACTTTG
CCCCTCCTTATTTCGACGACCGACAGCGTGAACTGCCGGTCGCTTCGCAT
TTTCAGGTCCAAGGGTCGAAAACGATGCACGGAGGCCGAAAGGGACCACA
CCCTTTCGTCGATCGTTCTTCGTCCCTCGTCCGCCCTGTGCAAGCATCGC
CGGATGAGCTGTGGGCTGCAGCTTTTGCAGCGGATGCAGGAGCGGCGGCG
GTTCTCCTGGAGAGAGGCGTTAGCGGTGGCGTCAATGTCAAGAACGAATA
TGGACAGACTGCGCTCCATCTGGTAATGCGACATGGGGTGCTTGCATGAA
TTCCGAAGAGGCAGCGCCACTGCGGTCAAAGGCCTGTTCTCTCTGCAGAG
GAATAGAGTTGCACCATTGGGAGGACAACCTGACAGACATCATTTCTATT
CTTGCCATCAGTTCCGCTGCAGCATTCACAGAGAGGTTTGCTGACGTCGG
CGTGCTGCATGACGGAAATTAACGGAGTATCTGTCTTCGAGAGCGGGTGT
TCATTTTATTATGCTTCGGGTGGACTGCATGGCAGCCGAGATAATAAGCA
ACGCCTGTTGCGCCGTTCCCATTCCGTTTTGCAGGCCAGCAGCTGTGCAG
ATGGCGATCGCGCCGCGGTGGCGGCCGTGCTTCTGCCGGCGGGGGCGAAC
GCACGGAGCATCGACCACGCCGGTGATACGCCTCTCCACGTTGCTGTCAG
TGCCACCCGTGCAGTTTCTGTCGGCGCCACCCGTGCAGCTCTCAGCGGAG
GCATCAGCGGCGGAGGCGGCGGCGGCGCCGTTTCGGCGTCTTCAGGCGCG
CTCGCTGCGCAGGCGAGGGGCGGCGGACGATGTGCAGACGCCAGCAGGTC
CCATTGCGAAGCCTCTTGCGGTTCTGAAAAGGGGATGGCTTGCCTACCAT
TCAGCCATGTAGAATCACGGGGCCTTAGTTTGTGTGTGCAAGCTAAAACG
GAATAGATGCTGATCCAGCCCCTTTCCAACTGGTTGGTTAATGATCCGCG
TGTGGTTCCTTTCTTTCCCACCGATCGACTTTCTTCCAACTCTGCTCCCG
CGAGCAGCTGCTGCAGCAGCGAGAAGAGGCGCTGGTTGGCGTACTACTCG
ACGCGGGCGCAGACCCGTTTGCTGTCGGATCTCGCGGCTGGACCCCGCTG
CACATCGCCGCGTTTGTCGGGGCCGAGCGAGTCACTTGCATGTTGCTGGC
CGCCGCCGGCACGCCCGCTTCCTTTGCTGGTTTTACAGGCAGCGGCAGCG
CCATTTACGGCGGCACGTATTGTTGCGGTGCCATTTACAGCGGGGTTGAA
ATGGCCGGCGGCATCGCCGCCGGCACTGGCGACAGTGCTAGTGCAGCTGT
CACCATCAGAGAAGGCGATGGGGCGGTAACACACCTACCAAATTACCATG
CGGCGGGCAGAGATCCGGCTGACGCCGGTGCCGCCGCTTGCGGTGACAGC
AAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5579:108..2160-

>mRNA_P-wetherbeei_contig5579.1.1 ID=mRNA_P-wetherbeei_contig5579.1.1|Name=mRNA_P-wetherbeei_contig5579.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig5579:108..2160- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGGAGGCCGAAAGGGACCACACCCTTTCGTCGATCGTTCTTCGTC
CCTCGTCCGCCCTGTGCAAGCATCGCCGGATGAGCTGTGGGCTGCAGCTT
TTGCAGCGGATGCAGGAGCGGCGGCGGTTCTCCTGGAGAGAGGCGTTAGC
GGTGGCGTCAATGTCAAGAACGAATATGGACAGACTGCGCTCCATCTGGC
CAGCAGCTGTGCAGATGGCGATCGCGCCGCGGTGGCGGCCGTGCTTCTGC
CGGCGGGGGCGAACGCACGGAGCATCGACCACGCCGGTGATACGCCTCTC
CACGTTGCTGTCAGTGCCACCCGTGCAGTTTCTGTCGGCGCCACCCGTGC
AGCTCTCAGCGGAGGCATCAGCGGCGGAGGCGGCGGCGGCGCCGTTTCGG
CGTCTTCAGGCGCGCTCGCTGCGCAGCTGCTGCAGCAGCGAGAAGAGGCG
CTGGTTGGCGTACTACTCGACGCGGGCGCAGACCCGTTTGCTGTCGGATC
TCGCGGCTGGACCCCGCTGCACATCGCCGCGTTTGTCGGGGCCGAGCGAG
TCACTTGCATGTTGCTGGCCGCCGCCGGCACGCCCGCTTCCTTTGCTGGT
TTTACAGGCAGCGGCAGCGCCATTTACGGCGGCACGTATTGTTGCGGTGC
CATTTACAGCGGGGTTGAAATGGCCGGCGGCATCGCCGCCGGCACTGGCG
ACAGTGCTAGTGCAGCTGTCACCATCAGAGAAGGCGATGGGGCGGTAACA
CACCTACCAAATTACCATGCGGCGGGCAGAGATCCGGCTGACGCCGGTGC
CGCCGCTTGCGGTGACAGCAAT
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