mRNA_P-wetherbeei_contig5578.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5578.2.1
Unique NamemRNA_P-wetherbeei_contig5578.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5578.2.1 vs. uniprot
Match: A0A662WC65_9STRA (Aconitase_C domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WC65_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.420e-33
Identity = 64/81 (79.01%), Postives = 70/81 (86.42%), Query Frame = 2 
Query:  191 QGMLPLTFADPSDYDRISGNDKVSILGLGSFAPGKPLKLRVTPAKAGIDPFDVTVNHTFNQEQIEWFKAGSALNLMKEVQA 433
            QGMLPLTFA+P+DYD+ISGNDKVSI+GLGSF PGKPL LRV PA +G  PFDVTVNHTFN EQI WFK GSALNLMK+  A
Sbjct:   39 QGMLPLTFANPADYDKISGNDKVSIVGLGSFTPGKPLTLRVAPA-SGAAPFDVTVNHTFNDEQIAWFKNGSALNLMKKTNA 118
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BLAST of mRNA_P-wetherbeei_contig5578.2.1 vs. uniprot
Match: M4B1W8_HYAAE (Aconitate hydratase, mitochondrial n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4B1W8_HYAAE)

HSP 1 Score: 131 bits (329), Expect = 1.170e-28
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 2 
Query:  191 QGMLPLTFADPSDYDRISGNDKVSILGLGSFAPGKPLKLRVTPAKAGIDPFDVTVNHTFNQEQIEWFKAGSALNLMKEVQA 433
            QGMLPLTFA+P+DYD+I+GNDKV+ILGL +FAPGKPL LRVTPA +G  PFD+TVNHTFN+EQIEWFK GSALNLMK+  A
Sbjct:  686 QGMLPLTFANPADYDKITGNDKVAILGLKNFAPGKPLTLRVTPA-SGEAPFDITVNHTFNEEQIEWFKHGSALNLMKKNNA 765
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BLAST of mRNA_P-wetherbeei_contig5578.2.1 vs. uniprot
Match: A0A418CC41_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418CC41_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.720e-27
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 2 
Query:  191 QGMLPLTFADPSDYDRISGNDKVSILGLGSFAPGKPLKLRVTPAKAGIDPFDVTVNHTFNQEQIEWFKAGSALNLMKEVQA 433
            QGMLPLTFA+PSDYD+ISGNDKVSI+GL  FAPGKPL L+VTP       FDV VNHTFN EQIEWFK GSALNLMK++ A
Sbjct:  362 QGMLPLTFANPSDYDKISGNDKVSIVGLDKFAPGKPLTLKVTPPSG--KTFDVVVNHTFNDEQIEWFKNGSALNLMKKLNA 440
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BLAST of mRNA_P-wetherbeei_contig5578.2.1 vs. uniprot
Match: A0A484DRT4_BRELC (Aconitate hydratase, mitochondrial n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRT4_BRELC)

HSP 1 Score: 127 bits (319), Expect = 2.380e-27
Identity = 60/81 (74.07%), Postives = 72/81 (88.89%), Query Frame = 2 
Query:  191 QGMLPLTFADPSDYDRISGNDKVSILGLGSFAPGKPLKLRVTPAKAGIDPFDVTVNHTFNQEQIEWFKAGSALNLMKEVQA 433
            QGMLPLTFA+P+DYD+++GNDKV+ILGL +F+PGKPL LRVTPA +G  PFD+TVNHTFN+EQI WFK GSALNLMK+  A
Sbjct:  741 QGMLPLTFANPADYDKVTGNDKVAILGLKTFSPGKPLTLRVTPA-SGEAPFDITVNHTFNEEQIAWFKNGSALNLMKKNNA 820
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BLAST of mRNA_P-wetherbeei_contig5578.2.1 vs. uniprot
Match: A0A067CD01_SAPPC (Aconitate hydratase, mitochondrial n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CD01_SAPPC)

HSP 1 Score: 126 bits (316), Expect = 4.960e-27
Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = 2 
Query:  191 QGMLPLTFADPSDYDRISGNDKVSILGLGSFAPGKPLKLRVTPAKAGIDPFDVTVNHTFNQEQIEWFKAGSALNLMKEVQA 433
            QGMLPLTFADP+DYD+I+GNDK+SI+GL  FAPGKPL L VTPA      FD+TVNHTFN EQI+WFK GSALNLMK++ A
Sbjct:  656 QGMLPLTFADPADYDKITGNDKISIVGLDKFAPGKPLTLHVTPASGAA--FDITVNHTFNDEQIDWFKHGSALNLMKKLNA 734
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BLAST of mRNA_P-wetherbeei_contig5578.2.1 vs. uniprot
Match: A0A8K1CDT1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDT1_PYTOL)

HSP 1 Score: 125 bits (315), Expect = 7.260e-27
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 2 
Query:  191 QGMLPLTFADPSDYDRISGNDKVSILGLGSFAPGKPLKLRVTPAKAGIDPFDVTVNHTFNQEQIEWFKAGSALNLMK 421
            QGMLPLTFA+ +DYD+I+GNDK+SILGL  F PGKPL +RVTPA     PFD+TVNHTFN+EQIEWFKAGSALNLMK
Sbjct:  704 QGMLPLTFANAADYDKITGNDKISILGLKDFQPGKPLTVRVTPANGS--PFDITVNHTFNEEQIEWFKAGSALNLMK 778
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BLAST of mRNA_P-wetherbeei_contig5578.2.1 vs. uniprot
Match: A0A397DX41_9STRA (Aconitate hydratase, mitochondrial (Fragment) n=12 Tax=Aphanomyces TaxID=100860 RepID=A0A397DX41_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.360e-26
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 2 
Query:  191 QGMLPLTFADPSDYDRISGNDKVSILGLGSFAPGKPLKLRVTPAKAGIDPFDVTVNHTFNQEQIEWFKAGSALNLMKEVQA 433
            QGMLPLTFA+PSDYD+ISGNDKVSI+GL  FAPGKPL L+VTP       FDV VNHTFN EQIEWFK GSALNLMK++ A
Sbjct:  737 QGMLPLTFANPSDYDKISGNDKVSIVGLDKFAPGKPLTLKVTPPSG--KTFDVVVNHTFNDEQIEWFKNGSALNLMKKLNA 815
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BLAST of mRNA_P-wetherbeei_contig5578.2.1 vs. uniprot
Match: H3G9W6_PHYRM (Aconitate hydratase, mitochondrial n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9W6_PHYRM)

HSP 1 Score: 124 bits (312), Expect = 1.740e-26
Identity = 60/81 (74.07%), Postives = 71/81 (87.65%), Query Frame = 2 
Query:  191 QGMLPLTFADPSDYDRISGNDKVSILGLGSFAPGKPLKLRVTPAKAGIDPFDVTVNHTFNQEQIEWFKAGSALNLMKEVQA 433
            QGMLPLTFA+P+DYD+I+GNDKV+I+GL SF+PGKPL LRVTPA +G   FD+TVNHTFN+EQI WFK GSALNLMK+  A
Sbjct:  705 QGMLPLTFANPADYDKITGNDKVAIVGLKSFSPGKPLTLRVTPA-SGEAAFDITVNHTFNEEQIAWFKNGSALNLMKKNNA 784
[Close]
BLAST of mRNA_P-wetherbeei_contig5578.2.1 vs. uniprot
Match: A0A397CYM6_9STRA (Ricin B-type lectin domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CYM6_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.110e-26
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 2 
Query:  191 QGMLPLTFADPSDYDRISGNDKVSILGLGSFAPGKPLKLRVTPAKAGIDPFDVTVNHTFNQEQIEWFKAGSALNLMKEVQA 433
            QGMLPLTFA+PSDYD+ISGNDKVSI+GL  FAPGKPL L+VTP       FDV VNHTFN EQIEWFK GSALNLMK++ A
Sbjct: 1840 QGMLPLTFANPSDYDKISGNDKVSIVGLDKFAPGKPLTLKVTPPSG--KTFDVVVNHTFNDEQIEWFKNGSALNLMKKLNA 1918
[Close]
BLAST of mRNA_P-wetherbeei_contig5578.2.1 vs. uniprot
Match: A0A485KQT9_9STRA (Aconitate hydratase, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQT9_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.200e-25
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:  191 QGMLPLTFADPSDYDRISGNDKVSILGLGSFAPGKPLKLRVTPAKAGIDPFDVTVNHTFNQEQIEWFKAGSALNLMKEVQA 433
            QGMLPLTFA+P+DYD++ G DK+SI+GL  FAPGKPL L+VTPA      FDV VNHTFN EQIEWFK GSALNLMK++ A
Sbjct:  707 QGMLPLTFANPADYDKLKGTDKISIVGLDKFAPGKPLTLKVTPASGA--GFDVVVNHTFNDEQIEWFKNGSALNLMKKLNA 785
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5578.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A662WC65_9STRA2.420e-3379.01Aconitase_C domain-containing protein (Fragment) n... [more]
M4B1W8_HYAAE1.170e-2877.78Aconitate hydratase, mitochondrial n=22 Tax=Perono... [more]
A0A418CC41_9STRA1.720e-2775.31Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A484DRT4_BRELC2.380e-2774.07Aconitate hydratase, mitochondrial n=1 Tax=Bremia ... [more]
A0A067CD01_SAPPC4.960e-2772.84Aconitate hydratase, mitochondrial n=4 Tax=Saprole... [more]
A0A8K1CDT1_PYTOL7.260e-2776.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A397DX41_9STRA1.360e-2675.31Aconitate hydratase, mitochondrial (Fragment) n=12... [more]
H3G9W6_PHYRM1.740e-2674.07Aconitate hydratase, mitochondrial n=1 Tax=Phytoph... [more]
A0A397CYM6_9STRA2.110e-2675.31Ricin B-type lectin domain-containing protein n=3 ... [more]
A0A485KQT9_9STRA3.200e-2570.37Aconitate hydratase, mitochondrial n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5578contigP-wetherbeei_contig5578:945..2508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog272952.HpaP800265
PFAMsAconitase,Aconitase_C
Model size1564
Max annot lvl4776|Peronosporales
KEGG rclassRC00497,RC00498,RC00618
KEGG koko:K01681
KEGG ReactionR01324,R01325,R01900
KEGG Pathwayko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00009,M00010,M00012,M00173,M00740
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.87e-33
EggNOG OGsCOG1048@1|root,KOG0453@2759|Eukaryota,3QBR1@4776|Peronosporales
Ec32 ortholog descriptionAconitate hydratase,
Ec32 orthologEc-16_001000.1
EC4.2.1.3
DescriptionAconitase family (aconitate hydratase)
Cds size429
COG categoryCE
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.15639-UTR-P-wetherbeei_contig5578:944..20661683186830.15639-UTR-P-wetherbeei_contig5578:944..2066Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5578 945..2066 -
1683186830.189039-UTR-P-wetherbeei_contig5578:2495..25081683186830.189039-UTR-P-wetherbeei_contig5578:2495..2508Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5578 2496..2508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.1707096-CDS-P-wetherbeei_contig5578:2066..24951683186830.1707096-CDS-P-wetherbeei_contig5578:2066..2495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5578 2067..2495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5578.2.1prot_P-wetherbeei_contig5578.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5578 2067..2495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5578.2.1

>prot_P-wetherbeei_contig5578.2.1 ID=prot_P-wetherbeei_contig5578.2.1|Name=mRNA_P-wetherbeei_contig5578.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
MCRCFVMAARSGSRAPPSVGEEADPHFSFLLSSEPFCSPFSSFLNPTFCV
VRPSPLFSLQGMLPLTFADPSDYDRISGNDKVSILGLGSFAPGKPLKLRV
TPAKAGIDPFDVTVNHTFNQEQIEWFKAGSALNLMKEVQAKA*
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mRNA from alignment at P-wetherbeei_contig5578:945..2508-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5578.2.1 ID=mRNA_P-wetherbeei_contig5578.2.1|Name=mRNA_P-wetherbeei_contig5578.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1564bp|location=Sequence derived from alignment at P-wetherbeei_contig5578:945..2508- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGAGCATTTATGTGTAGGTGTTTTGTGATGGCCGCGCGTTCCGGTT
CAAGAGCGCCACCCTCCGTTGGTGAAGAGGCTGACCCACATTTCTCCTTC
CTTCTTTCTTCTGAACCTTTCTGTTCCCCTTTCTCTTCGTTTCTCAACCC
GACCTTCTGCGTCGTTCGGCCTTCTCCTCTCTTCTCCCTGCAGGGCATGC
TCCCGCTGACCTTTGCGGACCCGAGCGACTATGACCGAATCAGCGGCAAC
GACAAGGTGTCCATCCTCGGCCTGGGCTCCTTCGCGCCGGGCAAGCCGCT
GAAGCTGCGGGTGACGCCGGCGAAGGCAGGCATCGATCCGTTCGACGTGA
CGGTGAACCACACGTTCAACCAGGAGCAGATTGAATGGTTCAAGGCCGGC
TCAGCCCTTAACCTCATGAAGGAGGTCCAGGCCAAGGCGTGAGAGAAGAC
GGCGAAGAGAAGGAGGAGAGCCGGCGTCGGCAGAGCTGGTGTCAACAAGC
GGCGCTGGCAGGCGGACGGGCGGCGGGCGGGCGGGCATTAGGAAGGTTGC
CGTCGCGACTGCTTGTGCCAGCGCCGCTGGCGCCGGCGGCGGTGCTGCTC
TCAGCCTCCGTTGCGTGGCCGCCTGCGGGAGCGAGGAGGCAGCGGCGGAG
GTGGCGGGGCGGCGGTGATGGGTTTGCTGCTCTGCGGGAGGCAGCGGCGG
GCGGGTATTACTGACGTATGTACCTGGCGCAGTTCAGCTTTCAGTGACTC
CGGCGCCGGCTGGGCTTCGGGCAGCCGCTCGTCGTCGGCGTCGGGGGCTG
CGCTGACGGCGGCACAGCCATGAATGGAGCGGCATCGGCGGCGGCGTTGG
TCCGGCTGGTCCGTTCGCCGTGGGAGAGGGCAGCTGGCGGCGGTTCGACA
CACCTGGCAATTTTCCCGAACGAGCTTCGTGGGGTCGCCGTCGCCGGCTG
CGGCGGCCGCAGTGGTGGTGGCGGAGGCCATATCGGTGGTGGTCGCAACA
GTGGCGGCCGTGAGCGGCGGCAGCGGCCGACAGCGAAGGCCAAAGTGGCT
GTGGACGGTGTTGCCTTTTTGTTCGGCGTCCGTGCACGCTAGCATTTGGG
CGGCGGGGCCGGCCGCAGCCAGGATCGAGGGTACTTGTTGCTGTTGTCGC
CGTTGCCAATTTGCCGGATGGAATGGGATTTTTGATGCTGGCAGTTGACA
AGCATATTCTTGAATGGGTGTAGTGTAGTAGGGGCGATGATGATTGAAGT
GGCAGGGGCAGCGGCTGTGGCAGTAGCAGCCAGCGGTGGCACTGGCGGCG
GCGGTTGGATGGACAGCGGCCCGCCATTTTGGCGTCTGCTGCATTTGGCA
GACGGTGTTTCGGCATCCGCTTCCTGTATTCTCTCTGCTTGGTGGCGCCA
TTTCGGACGTTGTTGCGGCGGAGTGGTGGTCCCAGAATAATTGGGGCGAC
GCTGCAGAGCGCTGTCCATTGTGGTGGGATGGCTGATAGAGGGGAAAGAT
TGGGTGTCGGCGCGCGCGGTTCGTGCCGACGGCCCGCCGCCATTTCTGCC
GTTTCTACTTCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5578:945..2508-

>mRNA_P-wetherbeei_contig5578.2.1 ID=mRNA_P-wetherbeei_contig5578.2.1|Name=mRNA_P-wetherbeei_contig5578.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig5578:945..2508- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGTAGGTGTTTTGTGATGGCCGCGCGTTCCGGTTCAAGAGCGCCACC
CTCCGTTGGTGAAGAGGCTGACCCACATTTCTCCTTCCTTCTTTCTTCTG
AACCTTTCTGTTCCCCTTTCTCTTCGTTTCTCAACCCGACCTTCTGCGTC
GTTCGGCCTTCTCCTCTCTTCTCCCTGCAGGGCATGCTCCCGCTGACCTT
TGCGGACCCGAGCGACTATGACCGAATCAGCGGCAACGACAAGGTGTCCA
TCCTCGGCCTGGGCTCCTTCGCGCCGGGCAAGCCGCTGAAGCTGCGGGTG
ACGCCGGCGAAGGCAGGCATCGATCCGTTCGACGTGACGGTGAACCACAC
GTTCAACCAGGAGCAGATTGAATGGTTCAAGGCCGGCTCAGCCCTTAACC
TCATGAAGGAGGTCCAGGCCAAGGCGTGA
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