mRNA_P-wetherbeei_contig55685.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55685.1.1
Unique NamemRNA_P-wetherbeei_contig55685.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55685.1.1 vs. uniprot
Match: UPI001FFACF51 (tRNA(His) guanylyltransferase Thg1 family protein n=1 Tax=Bradyrhizobium sp. 168 TaxID=2782639 RepID=UPI001FFACF51)

HSP 1 Score: 223 bits (568), Expect = 3.010e-71
Identity = 113/131 (86.26%), Postives = 117/131 (89.31%), Query Frame = 1
Query:    1 FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHGKGQRDMLEMLAEIGVEFEEFPESFRRGSFVRRFTVERALTGEELARIPEKHRPTGPVMRNEMRVVEMPPFNRVTNRVEVIFDGAPP 393
            FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHG+ Q+ ML ML EIGV FE FP +FRRGSFVRRFTVER LT EEL RIPEKHRP GPVMRNEMRVVEMP FNRV NRV+VIFDGA P
Sbjct:  132 FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHGQDQKAMLAMLTEIGVNFEVFPVAFRRGSFVRRFTVERPLTAEELERIPEKHRPIGPVMRNEMRVVEMPSFNRVANRVDVIFDGALP 262          
BLAST of mRNA_P-wetherbeei_contig55685.1.1 vs. uniprot
Match: UPI001906C40A (hypothetical protein n=1 Tax=Rhodovibrio sodomensis TaxID=1088 RepID=UPI001906C40A)

HSP 1 Score: 147 bits (372), Expect = 1.450e-41
Identity = 75/132 (56.82%), Postives = 96/132 (72.73%), Query Frame = 1
Query:    1 FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHGKGQRDMLEML-AEIGVEFEEFPESFRRGSFVRRFTVERALTGEELARIPEKHRPTGPVMRNEMRVVEMPPFNRVTNRVEVIFDGAPP 393
            FD RVFQ+PS++EAAN  LWR +DA KNAISM A++ FSHK+LHGK   +M EML  E G+ F ++  +F+RG+F +R    R L+ EE+A IPE HRPTGPV R E+  +EMP F++V NR  VIFDGA P
Sbjct:  131 FDARVFQVPSREEAANCLLWRELDATKNAISMAARAHFSHKRLHGKSGAEMQEMLWQEAGINFNDYEPAFKRGTFFQRRKRLRHLSEEEMAHIPEPHRPTGPVERTEIARLEMPRFSQVANRAAVIFDGAEP 262          
BLAST of mRNA_P-wetherbeei_contig55685.1.1 vs. uniprot
Match: A0A0F9LR36_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9LR36_9ZZZZ)

HSP 1 Score: 132 bits (333), Expect = 1.030e-36
Identity = 75/133 (56.39%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    1 FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHGKGQRDMLEML-AEIGVEFEEFPESFRRGSFVRRFTVERALTGEELARIPEKHRPTGPVM-RNEMRVVEMPPFNRVTNRVEVIFDGAPP 393
            FD RVFQLP+K EA NAFLWR  DA KNAISM A++ FSHK+L  K   +M EM+  E GV F ++P  F+RG+FVRR      LT E    IPE+HRP G V+ R+ M+ ++MP F+ VTNRVEVIFD A P
Sbjct:   46 FDSRVFQLPNKMEATNAFLWREQDATKNAISMAARTMFSHKELMNKSGNEMQEMMWQEHGVNFNDYPVFFKRGTFVRRELDWVELTDETYFNIPEEHRPDGRVVQRHCMKELDMPKFSTVTNRVEVIFDSADP 178          
BLAST of mRNA_P-wetherbeei_contig55685.1.1 vs. uniprot
Match: A0A1W9TIM8_9DELT (Thg1 domain-containing protein n=1 Tax=Desulfobacteraceae bacterium 4572_187 TaxID=1971620 RepID=A0A1W9TIM8_9DELT)

HSP 1 Score: 135 bits (339), Expect = 1.590e-36
Identity = 66/135 (48.89%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    1 FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHGKGQRDMLEMLAEIGVEFEEFPESFRRGSFVRRFTVERALTGEELARIPEKHR----PTGPVMRNEMRVVEMPPFNRVTNRVEVIFDGAPP 393
            FDCR +Q+P+ +EAAN FLWR +DA KN+ISM A+  +SHK LHGK   +M EML + GV + ++P  F+RG+F+++  V R  T +E+ ++PE+H+    P   + R+  R +EMPPF++V NRV+VIFDGA P
Sbjct:  130 FDCRAWQVPTLEEAANTFLWRELDATKNSISMAARCHYSHKALHGKKGSEMQEMLWQKGVNWNDYPGFFKRGTFIQKHRVYRKFTLDEIRKLPEQHQARNNPDLKIERSTFRRLEMPPFSKVRNRVDVIFDGAEP 264          
BLAST of mRNA_P-wetherbeei_contig55685.1.1 vs. uniprot
Match: A0A4R7C198_9HYPH (tRNA(His) 5'-end guanylyltransferase n=1 Tax=Enterovirga rhinocerotis TaxID=1339210 RepID=A0A4R7C198_9HYPH)

HSP 1 Score: 134 bits (336), Expect = 4.350e-36
Identity = 71/133 (53.38%), Postives = 90/133 (67.67%), Query Frame = 1
Query:    1 FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHGKGQRDMLEMLAEIGVEFEEFPESFRRGSFVRRFTVERALTGEELARIPEKHRPTGPV--MRNEMRVVEMPPFNRVTNRVEVIFDGAPP 393
            FD RVF +P +DEA NAFLWRA+DA +NA+ M A + FS K +  K  R++ +MLAE GV+F  +P  F+ G+FVRR  VER LT EELARIPE +RPT     +R E +  ++P F  V NR  VIFDGA P
Sbjct:  136 FDGRVFSVPDRDEATNAFLWRALDAERNAVQMAAHAVFSAKAMFKKPVRELRKMLAEKGVDFAGYPPWFKFGTFVRRAVVERTLTDEELARIPEANRPTASATFLRGETKAFQVPAFVEVENRAAVIFDGAEP 268          
BLAST of mRNA_P-wetherbeei_contig55685.1.1 vs. uniprot
Match: A0A6S7B0R1_9BURK (Thg1 domain-containing protein n=1 Tax=Pararobbsia alpina TaxID=621374 RepID=A0A6S7B0R1_9BURK)

HSP 1 Score: 130 bits (328), Expect = 7.350e-35
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    1 FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHGKGQRDMLEMLAEIGVEFEEFPESFRRGSFVRRFTVERALTGEELARIPEKHRPTGPVMRNEMRVVEMPPFNRVTNRVEVIFDGAPP 393
            FD RVF +PS DE  N  L+RA+D  KN+I+M A + +SHK LH K   D  EML   GV +  +P  F+ G+F+RR  V + L+ EELARIPEKHRP GPV R+++  V+MPPF R+ N   V+F G  P
Sbjct:  136 FDARVFNMPSLDEMVNCILFRALDCAKNSITMAASAYYSHKDLHAKNSSDKHEMLHVKGVNWANYPAFFKDGTFLRRELVVKELSAEELARIPEKHRPVGPVQRSQVAEVDMPPFARIANPKGVLFYGEAP 266          
BLAST of mRNA_P-wetherbeei_contig55685.1.1 vs. uniprot
Match: A0A0C2D726_9DELT (tRNAHis-5'-guanylyltransferase n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2D726_9DELT)

HSP 1 Score: 130 bits (327), Expect = 8.180e-35
Identity = 65/135 (48.15%), Postives = 92/135 (68.15%), Query Frame = 1
Query:    1 FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHGKGQRDMLEMLAEIGVEFEEFPESFRRGSFVRRFTVERALTGEELARIPEKHR----PTGPVMRNEMRVVEMPPFNRVTNRVEVIFDGAPP 393
            FDCRV+ LP++DEA NA LWR  DA KNAISM A+  +SH ++ G+      E+L   GV F ++P  F+RGSF +R  V+RA T +++ ++P +H     P+  V R  ++ VEMPPF++VTNRVEV+F+GA P
Sbjct:  128 FDCRVWSLPNQDEAVNALLWRERDATKNAISMAARHYYSHDEVMGRSSSQRQELLFRAGVNFNDYPPFFKRGSFFQRREVQRAFTAKDIEQLPPQHAARRDPSLVVSRTHVQRVEMPPFDQVTNRVEVVFEGAEP 262          
BLAST of mRNA_P-wetherbeei_contig55685.1.1 vs. uniprot
Match: A0A2S9YBI1_9DELT (tRNAHis guanylyltransferase n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9YBI1_9DELT)

HSP 1 Score: 128 bits (322), Expect = 4.470e-34
Identity = 66/135 (48.89%), Postives = 89/135 (65.93%), Query Frame = 1
Query:    1 FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHGKGQRDMLEMLAEIGVEFEEFPESFRRGSFVRRFTVERALTGEELARIPEKH----RPTGPVMRNEMRVVEMPPFNRVTNRVEVIFDGAPP 393
            FD RV+ LP+++EAAN  LWR  DA KNAISM A+  ++H ++ G+      E+L + GV F ++P  F+RGSF+RR  VER  T EEL  +P +H     P   V R  +R +EMPPF++VTNRV VIF+GA P
Sbjct:  128 FDARVWTLPTREEAANTLLWRERDATKNAISMAARHYYTHAEVTGQSASQQQELLFQAGVNFNDYPPFFKRGSFIRREQVERPFTAEELDELPPRHAARANPELRVSRTVVRRIEMPPFDKVTNRVAVIFEGAEP 262          
BLAST of mRNA_P-wetherbeei_contig55685.1.1 vs. uniprot
Match: A6G7V7_9DELT (Thg1 domain-containing protein n=1 Tax=Plesiocystis pacifica SIR-1 TaxID=391625 RepID=A6G7V7_9DELT)

HSP 1 Score: 128 bits (322), Expect = 5.150e-34
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 1
Query:    1 FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHGKGQRDMLEMLAEIGVEFEEFPESFRRGSFVRRFTVERALTGEELARIPEKH----RPTGPVMRNEMRVVEMPPFNRVTNRVEVIFDGAPP 393
            FDCR + +P+ DEAANA LWR  DA KN++SM A+S +SH +L GK   DM EML   GV + ++P  F+RG+FVRR  V R  + EEL R+P +H     P   + R  +R V+MPP NR+ NRV  +F+GA P
Sbjct:  132 FDCRCWTVPNLDEAANALLWRERDATKNSLSMAARSHYSHAQLDGKRGPDMHEMLHAAGVNWNDYPSFFKRGTFVRRERVSRPFSTEELERLPPRHAARANPDLVIERTVVRAVDMPPLNRIRNRVAALFEGAEP 266          
BLAST of mRNA_P-wetherbeei_contig55685.1.1 vs. uniprot
Match: B9TJS9_RICCO (Uncharacterized protein n=1 Tax=Ricinus communis TaxID=3988 RepID=B9TJS9_RICCO)

HSP 1 Score: 123 bits (309), Expect = 4.730e-33
Identity = 65/131 (49.62%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    1 FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHGKGQRDMLEMLAEIGVEFEEFPESFRRGSFVRRFTVERALTGEELARIPEKHRPTGPVMRNEMRVVEMPPFNRVTNRVEVIFDGAPP 393
            FDCRV+Q+PS + A   F WR  DA KNAI+M A + +S ++LH  G     ++L   GV F E+P  F+RG++VRR TV + L  E LA+IPE  RPTGPV R+E+R V+MPP  R+ N V+V+F  A P
Sbjct:   40 FDCRVWQVPSLELARENFEWRETDATKNAITMAASAFYSPRQLHKVGAAAKHDLLMAKGVNFNEYPAFFKRGTYVRRETVLKMLPQETLAKIPENRRPTGPVGRSEVRAVDMPPIARLANGVDVLFFRAAP 170          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55685.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FFACF513.010e-7186.26tRNA(His) guanylyltransferase Thg1 family protein ... [more]
UPI001906C40A1.450e-4156.82hypothetical protein n=1 Tax=Rhodovibrio sodomensi... [more]
A0A0F9LR36_9ZZZZ1.030e-3656.39Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A1W9TIM8_9DELT1.590e-3648.89Thg1 domain-containing protein n=1 Tax=Desulfobact... [more]
A0A4R7C198_9HYPH4.350e-3653.38tRNA(His) 5'-end guanylyltransferase n=1 Tax=Enter... [more]
A0A6S7B0R1_9BURK7.350e-3550.38Thg1 domain-containing protein n=1 Tax=Pararobbsia... [more]
A0A0C2D726_9DELT8.180e-3548.15tRNAHis-5'-guanylyltransferase n=1 Tax=Enhygromyxa... [more]
A0A2S9YBI1_9DELT4.470e-3448.89tRNAHis guanylyltransferase n=1 Tax=Enhygromyxa sa... [more]
A6G7V7_9DELT5.150e-3448.89Thg1 domain-containing protein n=1 Tax=Plesiocysti... [more]
B9TJS9_RICCO4.730e-3349.62Uncharacterized protein n=1 Tax=Ricinus communis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55685contigP-wetherbeei_contig55685:1..405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog391625.PPSIR1_23574
PFAMsThg1,Thg1C
Model size405
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.44e-35
EggNOG OGsCOG4021@1|root,COG4021@2|Bacteria,1MX0R@1224|Proteobacteria,438D3@68525|delta/epsilon subdivisions,2X3N9@28221|Deltaproteobacteria,2YWMN@29|Myxococcales
DescriptiontRNAHis guanylyltransferase
Cds size405
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.7579124-CDS-P-wetherbeei_contig55685:0..4051683186828.7579124-CDS-P-wetherbeei_contig55685:0..405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55685 1..405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55685.1.1prot_P-wetherbeei_contig55685.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55685 1..405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55685.1.1

>prot_P-wetherbeei_contig55685.1.1 ID=prot_P-wetherbeei_contig55685.1.1|Name=mRNA_P-wetherbeei_contig55685.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
FDCRVFQLPSKDEAANAFLWRAMDARKNAISMVAQSKFSHKKLHGKGQRD
MLEMLAEIGVEFEEFPESFRRGSFVRRFTVERALTGEELARIPEKHRPTG
PVMRNEMRVVEMPPFNRVTNRVEVIFDGAPPTQC*
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mRNA from alignment at P-wetherbeei_contig55685:1..405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55685.1.1 ID=mRNA_P-wetherbeei_contig55685.1.1|Name=mRNA_P-wetherbeei_contig55685.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig55685:1..405+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGATTGCCGGGTATTCCAGCTACCCTCAAAGGATGAGGCCGCCAACGC CTTCCTGTGGCGCGCTATGGATGCCCGCAAGAACGCCATCAGCATGGTTG CTCAAAGCAAATTTTCCCACAAGAAGCTGCACGGCAAGGGCCAGAGGGAT ATGCTGGAGATGCTGGCAGAGATCGGCGTCGAGTTCGAGGAGTTCCCGGA ATCGTTCCGGCGCGGCTCGTTTGTTCGGCGCTTCACGGTAGAGCGGGCGC TAACCGGCGAGGAGTTGGCGCGCATCCCGGAAAAGCATCGTCCGACCGGA CCCGTCATGCGAAACGAAATGCGGGTGGTTGAGATGCCGCCATTCAATCG GGTGACGAACCGTGTCGAAGTCATATTCGACGGCGCGCCGCCTACTCAGT GTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55685:1..405+

>mRNA_P-wetherbeei_contig55685.1.1 ID=mRNA_P-wetherbeei_contig55685.1.1|Name=mRNA_P-wetherbeei_contig55685.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig55685:1..405+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGATTGCCGGGTATTCCAGCTACCCTCAAAGGATGAGGCCGCCAACGC
CTTCCTGTGGCGCGCTATGGATGCCCGCAAGAACGCCATCAGCATGGTTG
CTCAAAGCAAATTTTCCCACAAGAAGCTGCACGGCAAGGGCCAGAGGGAT
ATGCTGGAGATGCTGGCAGAGATCGGCGTCGAGTTCGAGGAGTTCCCGGA
ATCGTTCCGGCGCGGCTCGTTTGTTCGGCGCTTCACGGTAGAGCGGGCGC
TAACCGGCGAGGAGTTGGCGCGCATCCCGGAAAAGCATCGTCCGACCGGA
CCCGTCATGCGAAACGAAATGCGGGTGGTTGAGATGCCGCCATTCAATCG
GGTGACGAACCGTGTCGAAGTCATATTCGACGGCGCGCCGCCTACTCAGT
GTTGA
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