mRNA_P-wetherbeei_contig55673.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55673.1.1
Unique NamemRNA_P-wetherbeei_contig55673.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55673.1.1 vs. uniprot
Match: W3RPM7_9BRAD (Uncharacterized protein n=1 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RPM7_9BRAD)

HSP 1 Score: 56.6 bits (135), Expect = 3.970e-9
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 MKKLAVSLLAGAAAL----VAGSAQAAPLSPMAPTIDNGIENVRMVCDQFG 141
            M KLAVSL AGAAAL    V     AAPL P +P IDNG+ENVR+VC+++G
Sbjct:    1 MNKLAVSLAAGAAALFVSTVVSPVNAAPLMPTSPAIDNGVENVRLVCNEWG 51
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BLAST of mRNA_P-wetherbeei_contig55673.1.1 vs. uniprot
Match: UPI001C02A585 (hypothetical protein n=1 Tax=Bradyrhizobium sp. S2-11-4 TaxID=2840473 RepID=UPI001C02A585)

HSP 1 Score: 50.8 bits (120), Expect = 7.290e-7
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 MKKLAVSLLAGAAALVAGSAQAAPLSP-MAPTIDNGIENVRMVCDQFG 141
            MKK+ +SL   A+AL A +A AAP+S  +A   DNGIENVRMVCDQ+G
Sbjct:    1 MKKIIISLALSASALFATAASAAPMSNGIAVMPDNGIENVRMVCDQYG 48
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BLAST of mRNA_P-wetherbeei_contig55673.1.1 vs. uniprot
Match: A0A1M7B5I0_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M7B5I0_9BRAD)

HSP 1 Score: 49.3 bits (116), Expect = 3.350e-6
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 MKKLAVSLLAGAAALVAGSAQAAPLSPMAPTI--DNGIENVRMVCDQFG 141
            MK +A+SL  G  AL++  A AAPL+ ++P++  DNG+ENVRMVCD++G
Sbjct:    1 MKNVAISLAIGVGALLSSGANAAPLT-VSPSMMPDNGVENVRMVCDEYG 48
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BLAST of mRNA_P-wetherbeei_contig55673.1.1 vs. uniprot
Match: A0A1M6UIY6_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M6UIY6_9BRAD)

HSP 1 Score: 47.0 bits (110), Expect = 2.710e-5
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 MKKLAVSLLAGAAALVAGSAQAAPLSPMAPTI--DNGIENVRMVCDQFG 141
            MK + +SL  G  AL++  A AAPLS ++P++  DNG+ENVR+VCD +G
Sbjct:    1 MKYVVISLAIGVGALLSSGANAAPLS-VSPSVLPDNGVENVRLVCDDYG 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55673.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
W3RPM7_9BRAD3.970e-960.78Uncharacterized protein n=1 Tax=Afipia sp. P52-10 ... [more]
UPI001C02A5857.290e-760.42hypothetical protein n=1 Tax=Bradyrhizobium sp. S2... [more]
A0A1M7B5I0_9BRAD3.350e-653.06Uncharacterized protein n=1 Tax=Bradyrhizobium lab... [more]
A0A1M6UIY6_9BRAD2.710e-551.02Uncharacterized protein n=1 Tax=Bradyrhizobium lab... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55673contigP-wetherbeei_contig55673:382..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1429916.X566_11495
Model size141
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.51e-10
EggNOG OGs2ABME@1|root,31131@2|Bacteria,1N0VY@1224|Proteobacteria,2UCNG@28211|Alphaproteobacteria,3K0RC@41294|Bradyrhizobiaceae
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.6551223-CDS-P-wetherbeei_contig55673:381..5221683186828.6551223-CDS-P-wetherbeei_contig55673:381..522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55673 382..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55673.1.1prot_P-wetherbeei_contig55673.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55673 382..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55673.1.1

>prot_P-wetherbeei_contig55673.1.1 ID=prot_P-wetherbeei_contig55673.1.1|Name=mRNA_P-wetherbeei_contig55673.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
MKKLAVSLLAGAAALVAGSAQAAPLSPMAPTIDNGIENVRMVCDQFG
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mRNA from alignment at P-wetherbeei_contig55673:382..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55673.1.1 ID=mRNA_P-wetherbeei_contig55673.1.1|Name=mRNA_P-wetherbeei_contig55673.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig55673:382..522+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAAGCTTGCAGTTTCGCTTCTCGCCGGTGCTGCGGCGCTCGTGGC
AGGCAGCGCGCAGGCCGCGCCGCTGAGCCCGATGGCGCCGACGATCGACA
ACGGCATCGAAAACGTTCGCATGGTCTGTGACCAGTTTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55673:382..522+

>mRNA_P-wetherbeei_contig55673.1.1 ID=mRNA_P-wetherbeei_contig55673.1.1|Name=mRNA_P-wetherbeei_contig55673.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig55673:382..522+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAAGCTTGCAGTTTCGCTTCTCGCCGGTGCTGCGGCGCTCGTGGC
AGGCAGCGCGCAGGCCGCGCCGCTGAGCCCGATGGCGCCGACGATCGACA
ACGGCATCGAAAACGTTCGCATGGTCTGTGACCAGTTTGGC
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