mRNA_P-wetherbeei_contig55539.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55539.1.1
Unique NamemRNA_P-wetherbeei_contig55539.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55539.1.1 vs. uniprot
Match: A0A521LXP9_9HYPH (Patatin-like phospholipase family protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LXP9_9HYPH)

HSP 1 Score: 323 bits (827), Expect = 3.870e-108
Identity = 149/173 (86.13%), Postives = 160/173 (92.49%), Query Frame = 1
Query:    1 HPDWVAGISIGAINSALIAGNAPERRVEKLRAFWETVTTPPLGIPFLSGLEIKNDMQRQMVNQWRAMGTLLWGAPSFFKPRVPPPIFTPAGNPGNLSFYDIGPLRTLLESLVDFDRINARETRFSVGATNVRTGNLTYFDNTTHKVGAAHVMASGSLPPGFPATEVDGEFYWD 519
            HPDWVAGISIGAIN+ALIAGNAPERRVEKLRAFWETVT PP+GIP+ +GL+IKNDMQ Q+VNQWRAMGTLLWGAP+FFKPR PPPIFTPAGNPGNLSFYD+ PL+ LLE LVDFDRIN+ E RFSVGATNVRTGN  YFDN THKV AAHVMASGSLPPGFPATE+DGEFYWD
Sbjct:   47 HPDWVAGISIGAINAALIAGNAPERRVEKLRAFWETVTAPPMGIPYFAGLDIKNDMQHQLVNQWRAMGTLLWGAPNFFKPRFPPPIFTPAGNPGNLSFYDVAPLKALLEQLVDFDRINSGEMRFSVGATNVRTGNFAYFDNKTHKVAAAHVMASGSLPPGFPATEIDGEFYWD 219          
BLAST of mRNA_P-wetherbeei_contig55539.1.1 vs. uniprot
Match: A0A1F3A203_9PROT (PNPLA domain-containing protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F3A203_9PROT)

HSP 1 Score: 299 bits (765), Expect = 1.060e-98
Identity = 139/173 (80.35%), Postives = 153/173 (88.44%), Query Frame = 1
Query:    1 HPDWVAGISIGAINSALIAGNAPERRVEKLRAFWETVTTPPLGIPFLSGLEIKNDMQRQMVNQWRAMGTLLWGAPSFFKPRVPPPIFTPAGNPGNLSFYDIGPLRTLLESLVDFDRINARETRFSVGATNVRTGNLTYFDNTTHKVGAAHVMASGSLPPGFPATEVDGEFYWD 519
            HPDWVAGISIGAIN+ALIAGN PERRVE+LRAFWETVT PPLG+P L+G+E  NDM R +VNQWRAMGTLLWGAPSFFKPRVPPP+F  A +P  L +YDI PL+ LLE LVDFDRINA E RFSVGATNV+TGN  YFD+TTH++GAAHVMASGSLPPGFPATEVDGEFYWD
Sbjct:   50 HPDWVAGISIGAINAALIAGNPPERRVERLRAFWETVTQPPLGVPHLAGVEFPNDMTRMLVNQWRAMGTLLWGAPSFFKPRVPPPLFGQAASPATLGYYDIMPLKDLLEGLVDFDRINAGEMRFSVGATNVKTGNFAYFDSTTHRIGAAHVMASGSLPPGFPATEVDGEFYWD 222          
BLAST of mRNA_P-wetherbeei_contig55539.1.1 vs. uniprot
Match: A0A1Q3LA83_9PROT (PNPLA domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Q3LA83_9PROT)

HSP 1 Score: 286 bits (731), Expect = 1.030e-93
Identity = 125/173 (72.25%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 HPDWVAGISIGAINSALIAGNAPERRVEKLRAFWETVTTPPLGIPFLSGLEIKNDMQRQMVNQWRAMGTLLWGAPSFFKPRVPPPIFTPAGNPGNLSFYDIGPLRTLLESLVDFDRINARETRFSVGATNVRTGNLTYFDNTTHKVGAAHVMASGSLPPGFPATEVDGEFYWD 519
            HPDWVAGISIGAINSALI GNAP +RVEKLRAFWE V+ PPLGIP+    EIK+D Q Q++NQWR++GTL+WGAP FF+PR PPP+  PAGNPGNL++YD+GPL++LLE L+DFDRINA++ RFSVGA NV+TGN  YFDN TH++G  H+MASG+LPPGFPA EVDGE+YWD
Sbjct:   42 HPDWVAGISIGAINSALIVGNAPGQRVEKLRAFWEQVSRPPLGIPYFEKFEIKSDFQHQLINQWRSLGTLMWGAPGFFQPRFPPPLALPAGNPGNLAYYDVGPLKSLLEQLIDFDRINAKKERFSVGAVNVKTGNFIYFDNQTHRIGPQHIMASGALPPGFPAVEVDGEYYWD 214          
BLAST of mRNA_P-wetherbeei_contig55539.1.1 vs. uniprot
Match: A0A6N6ZS06_9PROT (NTE family protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6N6ZS06_9PROT)

HSP 1 Score: 284 bits (726), Expect = 5.900e-93
Identity = 129/173 (74.57%), Postives = 148/173 (85.55%), Query Frame = 1
Query:    1 HPDWVAGISIGAINSALIAGNAPERRVEKLRAFWETVTTPPLGIPFLSGLEIKNDMQRQMVNQWRAMGTLLWGAPSFFKPRVPPPIFTPAGNPGNLSFYDIGPLRTLLESLVDFDRINARETRFSVGATNVRTGNLTYFDNTTHKVGAAHVMASGSLPPGFPATEVDGEFYWD 519
            HPDWVAGISIGAINSALIAGNAPE+RVEKLR+FWET+T  PLG+P + G +  +DM+RQ  NQ  +  TL++GAP FFKPR PPPIFTPAGNPGNL++YD+ PL+TLLE LVDFDRINA+E RFSVGATNV+TGN  YFDN TH +G  HV+ASGSLPPGFPA EVDGEFYWD
Sbjct:   38 HPDWVAGISIGAINSALIAGNAPEQRVEKLRSFWETITRSPLGVPMMKGFDFSSDMERQFANQLGSFATLMFGAPEFFKPRFPPPIFTPAGNPGNLAYYDVSPLKTLLEQLVDFDRINAKEMRFSVGATNVKTGNFIYFDNDTHTIGPQHVIASGSLPPGFPAAEVDGEFYWD 210          
BLAST of mRNA_P-wetherbeei_contig55539.1.1 vs. uniprot
Match: A0A1T4NSJ9_9HYPH (NTE family protein n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4NSJ9_9HYPH)

HSP 1 Score: 280 bits (717), Expect = 1.540e-91
Identity = 125/173 (72.25%), Postives = 148/173 (85.55%), Query Frame = 1
Query:    1 HPDWVAGISIGAINSALIAGNAPERRVEKLRAFWETVTTPPLGIPFLSGLEIKNDMQRQMVNQWRAMGTLLWGAPSFFKPRVPPPIFTPAGNPGNLSFYDIGPLRTLLESLVDFDRINARETRFSVGATNVRTGNLTYFDNTTHKVGAAHVMASGSLPPGFPATEVDGEFYWD 519
            HPDWVAGISIGAINSA+IAGN PERRVE+LR FWETV+ PP+GIP+++ LEIKNDM RQM+NQWRAMG LLWGAP FFKPRVPPPIF P  +PG LSFYD+ PL +LL+ LVDFD +N+  TR SVGAT++++GN  YFD+  HK+  AH++ASGSLPPGFPATE+DGE YWD
Sbjct:   46 HPDWVAGISIGAINSAIIAGNPPERRVERLRQFWETVSQPPMGIPYMASLEIKNDMTRQMINQWRAMGALLWGAPDFFKPRVPPPIFLPVSSPGALSFYDVSPLDSLLQRLVDFDLLNSGSTRISVGATHIKSGNFVYFDSLKHKIAPAHIIASGSLPPGFPATEIDGEHYWD 218          
BLAST of mRNA_P-wetherbeei_contig55539.1.1 vs. uniprot
Match: A0A259MRD2_9PROT (PNPLA domain-containing protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MRD2_9PROT)

HSP 1 Score: 280 bits (716), Expect = 2.240e-91
Identity = 128/173 (73.99%), Postives = 145/173 (83.82%), Query Frame = 1
Query:    1 HPDWVAGISIGAINSALIAGNAPERRVEKLRAFWETVTTPPLGIPFLSGLEIKNDMQRQMVNQWRAMGTLLWGAPSFFKPRVPPPIFTPAGNPGNLSFYDIGPLRTLLESLVDFDRINARETRFSVGATNVRTGNLTYFDNTTHKVGAAHVMASGSLPPGFPATEVDGEFYWD 519
            HPDWVAGISIGAINSALIAGN PE RVEKLR FWET+T  PLG+P + G +  +DM+RQ VNQ  +  TL++GAP FFKPR PPPIFTPAGNPGNL++YD+ PL+ LLE LVDFDRINA+E RFSVGATNV+TGN  YFDN TH +G  HV+ASGSLPPGFPA EVDGEFYWD
Sbjct:   43 HPDWVAGISIGAINSALIAGNPPETRVEKLRTFWETITRSPLGVPMMKGFDFSSDMERQFVNQLGSFATLMFGAPEFFKPRFPPPIFTPAGNPGNLAYYDVAPLKALLERLVDFDRINAKEMRFSVGATNVKTGNFIYFDNDTHTIGPQHVIASGSLPPGFPAAEVDGEFYWD 215          
BLAST of mRNA_P-wetherbeei_contig55539.1.1 vs. uniprot
Match: A0A521LB96_9HYPH (Patatin-like phospholipase family protein (Fragment) n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LB96_9HYPH)

HSP 1 Score: 263 bits (673), Expect = 1.620e-87
Identity = 117/159 (73.58%), Postives = 140/159 (88.05%), Query Frame = 1
Query:    1 HPDWVAGISIGAINSALIAGNAPERRVEKLRAFWETVTTPPLGIPFLSGLEIKNDMQRQMVNQWRAMGTLLWGAPSFFKPRVPPPIFTPAGNPGNLSFYDIGPLRTLLESLVDFDRINARETRFSVGATNVRTGNLTYFDNTTHKVGAAHVMASGSLPP 477
            HPDWVAGISIGAINSALI GNAPE+RVEKLRAFWETVT PP+G+P+   +++ +D+Q Q++NQWR+ GT+++GAP FF+PR PPPIFTPAGNPGNL++YDI PLR+LLE LVDFDRINA+  RFSVGA NV+TGN  YFDNTTHK+G  HVMASG+LPP
Sbjct:   39 HPDWVAGISIGAINSALIMGNAPEQRVEKLRAFWETVTKPPMGVPYFKDIDLHSDLQHQLINQWRSFGTMMFGAPEFFQPRFPPPIFTPAGNPGNLAYYDISPLRSLLERLVDFDRINAKRERFSVGAVNVKTGNFVYFDNTTHKIGPQHVMASGALPP 197          
BLAST of mRNA_P-wetherbeei_contig55539.1.1 vs. uniprot
Match: A0A512NI68_9HYPH (Membrane protein n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512NI68_9HYPH)

HSP 1 Score: 266 bits (680), Expect = 5.380e-86
Identity = 122/173 (70.52%), Postives = 145/173 (83.82%), Query Frame = 1
Query:    1 HPDWVAGISIGAINSALIAGNAPERRVEKLRAFWETVTTPPLGIPFLSGLEIKNDMQRQMVNQWRAMGTLLWGAPSFFKPRVPPPIFTPAGNPGNLSFYDIGPLRTLLESLVDFDRINARETRFSVGATNVRTGNLTYFDNTTHKVGAAHVMASGSLPPGFPATEVDGEFYWD 519
            HPD VAGISIGAINSA+IAGN   +RV+KLR FWETV+TPPLGIP ++ L++ ND Q  MVNQWRA+G L+WGAPSFF+PR PPPIFTPA  P  L FYD  PL++LLESLVDFDRINA ETRFSVGA N++TGNL YF++ THK+   H+MASG+LPPGFPA E+DG++YWD
Sbjct:   42 HPDCVAGISIGAINSAIIAGNPAAKRVDKLRKFWETVSTPPLGIPDIASLKLSNDFQHTMVNQWRALGILMWGAPSFFQPRFPPPIFTPAAVPDRLGFYDTRPLKSLLESLVDFDRINAGETRFSVGAVNIKTGNLIYFEDQTHKIIPEHIMASGALPPGFPAIEIDGDYYWD 214          
BLAST of mRNA_P-wetherbeei_contig55539.1.1 vs. uniprot
Match: A0A1H8X1M7_9PROT (NTE family protein n=2 Tax=unclassified Rhodospirillales TaxID=941843 RepID=A0A1H8X1M7_9PROT)

HSP 1 Score: 265 bits (676), Expect = 2.440e-85
Identity = 123/174 (70.69%), Postives = 145/174 (83.33%), Query Frame = 1
Query:    1 HPDWVAGISIGAINSALIAGNAPERRVEKLRAFWETVTTPPLGIPFLSGLEIKNDMQRQMVNQWRAMGTLLWGAPSFFKPRVPPPIFTPAGNPGNLSFYDIGPLRTLLESLVDFDRIN-ARETRFSVGATNVRTGNLTYFDNTTHKVGAAHVMASGSLPPGFPATEVDGEFYWD 519
            HPD VAGISIGAINSA+IAGN    RV KLR FWETV++PPLG+P +S L++ ++ QRQMVNQWRA+GTLLWGAPSFF+PRVPPPIFTPA  P  L FYD  PL++LLESLVDFDRIN  + TRF VGA N++TGN  YF+N THK+ A H+MASG+LPPGFPA EVDG++YWD
Sbjct:   42 HPDCVAGISIGAINSAIIAGNPANERVGKLRKFWETVSSPPLGVPDISSLKLNDNFQRQMVNQWRALGTLLWGAPSFFQPRVPPPIFTPAAPPDRLGFYDTKPLKSLLESLVDFDRINDTKGTRFGVGAVNIKTGNFIYFENHTHKIAAEHIMASGALPPGFPAVEVDGDYYWD 215          
BLAST of mRNA_P-wetherbeei_contig55539.1.1 vs. uniprot
Match: A0A1C3XNT7_9BRAD (NTE family protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A1C3XNT7_9BRAD)

HSP 1 Score: 250 bits (639), Expect = 1.060e-79
Identity = 113/171 (66.08%), Postives = 143/171 (83.63%), Query Frame = 1
Query:    7 DWVAGISIGAINSALIAGNAPERRVEKLRAFWETVTTPPLGIPFLSGLEIKNDMQRQMVNQWRAMGTLLWGAPSFFKPRVPPPIFTPAGNPGNLSFYDIGPLRTLLESLVDFDRINARETRFSVGATNVRTGNLTYFDNTTHKVGAAHVMASGSLPPGFPATEVDGEFYWD 519
            DWVAGISIGA+N+ALIAGNAPE+RVE+LR FWE V+T PLG+P+L  +EI N++ R+ VNQ RA+G +L+GAP+FF PRV PP+F  AG+  ++S+YD+ PL+T LE LVDFDRIN+   RFSVGA NVRTGN  YFDN TH++  AH++ASGSLPPGFPATE++GE+YWD
Sbjct:   52 DWVAGISIGAVNAALIAGNAPEKRVERLREFWEAVSTAPLGVPYLKSIEITNELTRRFVNQSRALGIMLFGAPNFFTPRVLPPLFWSAGSASSVSYYDVAPLKTTLERLVDFDRINSERMRFSVGAVNVRTGNFLYFDNRTHRICPAHIIASGSLPPGFPATEIEGEYYWD 222          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55539.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521LXP9_9HYPH3.870e-10886.13Patatin-like phospholipase family protein n=1 Tax=... [more]
A0A1F3A203_9PROT1.060e-9880.35PNPLA domain-containing protein n=1 Tax=Alphaprote... [more]
A0A1Q3LA83_9PROT1.030e-9372.25PNPLA domain-containing protein n=3 Tax=Alphaprote... [more]
A0A6N6ZS06_9PROT5.900e-9374.57NTE family protein n=3 Tax=Alphaproteobacteria Tax... [more]
A0A1T4NSJ9_9HYPH1.540e-9172.25NTE family protein n=1 Tax=Enhydrobacter aerosaccu... [more]
A0A259MRD2_9PROT2.240e-9173.99PNPLA domain-containing protein n=2 Tax=Alphaprote... [more]
A0A521LB96_9HYPH1.620e-8773.58Patatin-like phospholipase family protein (Fragmen... [more]
A0A512NI68_9HYPH5.380e-8670.52Membrane protein n=1 Tax=Reyranella soli TaxID=123... [more]
A0A1H8X1M7_9PROT2.440e-8570.69NTE family protein n=2 Tax=unclassified Rhodospiri... [more]
A0A1C3XNT7_9BRAD1.060e-7966.08NTE family protein n=3 Tax=Bradyrhizobium TaxID=37... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55539contigP-wetherbeei_contig55539:4..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1205680.CAKO01000002_gene2118
PFAMsDUF3734,Patatin
Model size519
Max annot lvl204441|Rhodospirillales
KEGG koko:K07001
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.95e-95
EggNOG OGsCOG1752@1|root,COG1752@2|Bacteria,1MVHW@1224|Proteobacteria,2TS4V@28211|Alphaproteobacteria,2JVU8@204441|Rhodospirillales
DescriptionPatatin phospholipase
Cds size519
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.075967-CDS-P-wetherbeei_contig55539:3..5221683186827.075967-CDS-P-wetherbeei_contig55539:3..522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55539 4..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55539.1.1prot_P-wetherbeei_contig55539.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55539 4..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55539.1.1

>prot_P-wetherbeei_contig55539.1.1 ID=prot_P-wetherbeei_contig55539.1.1|Name=mRNA_P-wetherbeei_contig55539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
HPDWVAGISIGAINSALIAGNAPERRVEKLRAFWETVTTPPLGIPFLSGL
EIKNDMQRQMVNQWRAMGTLLWGAPSFFKPRVPPPIFTPAGNPGNLSFYD
IGPLRTLLESLVDFDRINARETRFSVGATNVRTGNLTYFDNTTHKVGAAH
VMASGSLPPGFPATEVDGEFYWD
back to top

mRNA from alignment at P-wetherbeei_contig55539:4..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55539.1.1 ID=mRNA_P-wetherbeei_contig55539.1.1|Name=mRNA_P-wetherbeei_contig55539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55539:4..522+ (Phaeothamnion wetherbeei SAG_119_79)
CATCCCGACTGGGTGGCCGGCATCTCGATCGGCGCCATCAACTCGGCGCT GATCGCCGGCAATGCGCCGGAGCGGCGGGTCGAGAAGCTGCGCGCCTTCT GGGAGACGGTGACGACCCCGCCGCTCGGCATTCCCTTTCTCTCGGGCCTC GAGATCAAGAACGACATGCAGCGCCAGATGGTGAACCAGTGGCGCGCCAT GGGCACCCTGCTGTGGGGGGCGCCGAGCTTCTTCAAGCCGCGCGTGCCGC CGCCGATCTTCACGCCGGCCGGCAATCCCGGGAACCTGAGCTTCTACGAC ATCGGGCCACTCAGGACCCTGCTCGAGAGCCTGGTCGACTTCGACCGGAT CAATGCCCGCGAAACCCGCTTCAGCGTCGGCGCCACCAACGTCAGGACCG GCAACCTCACCTACTTCGACAACACGACGCACAAGGTCGGCGCCGCGCAC GTCATGGCCAGCGGCTCGCTGCCGCCGGGCTTTCCTGCGACCGAAGTCGA CGGCGAGTTCTATTGGGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55539:4..522+

>mRNA_P-wetherbeei_contig55539.1.1 ID=mRNA_P-wetherbeei_contig55539.1.1|Name=mRNA_P-wetherbeei_contig55539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55539:4..522+ (Phaeothamnion wetherbeei SAG_119_79)
CATCCCGACTGGGTGGCCGGCATCTCGATCGGCGCCATCAACTCGGCGCT
GATCGCCGGCAATGCGCCGGAGCGGCGGGTCGAGAAGCTGCGCGCCTTCT
GGGAGACGGTGACGACCCCGCCGCTCGGCATTCCCTTTCTCTCGGGCCTC
GAGATCAAGAACGACATGCAGCGCCAGATGGTGAACCAGTGGCGCGCCAT
GGGCACCCTGCTGTGGGGGGCGCCGAGCTTCTTCAAGCCGCGCGTGCCGC
CGCCGATCTTCACGCCGGCCGGCAATCCCGGGAACCTGAGCTTCTACGAC
ATCGGGCCACTCAGGACCCTGCTCGAGAGCCTGGTCGACTTCGACCGGAT
CAATGCCCGCGAAACCCGCTTCAGCGTCGGCGCCACCAACGTCAGGACCG
GCAACCTCACCTACTTCGACAACACGACGCACAAGGTCGGCGCCGCGCAC
GTCATGGCCAGCGGCTCGCTGCCGCCGGGCTTTCCTGCGACCGAAGTCGA
CGGCGAGTTCTATTGGGAC
back to top