mRNA_P-wetherbeei_contig5538.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5538.1.1
Unique NamemRNA_P-wetherbeei_contig5538.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5538.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5538contigP-wetherbeei_contig5538:567..2052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size928
Hectar predicted targeting categorysignal peptide
Exons3
Cds size927
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.2231214-CDS-P-wetherbeei_contig5538:567..6061683186825.2231214-CDS-P-wetherbeei_contig5538:567..606Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5538 568..606 -
1683186825.2391765-CDS-P-wetherbeei_contig5538:954..14291683186825.2391765-CDS-P-wetherbeei_contig5538:954..1429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5538 955..1429 -
1683186825.2475517-CDS-P-wetherbeei_contig5538:1639..20521683186825.2475517-CDS-P-wetherbeei_contig5538:1639..2052Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5538 1640..2052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5538.1.1prot_P-wetherbeei_contig5538.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5538 568..2052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5538.1.1

>prot_P-wetherbeei_contig5538.1.1 ID=prot_P-wetherbeei_contig5538.1.1|Name=mRNA_P-wetherbeei_contig5538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=309bp
RAFLGRVAAGRMTEGFLAACARIAVFVLLSLVVNSSGQAVEVRKNHASSG
HLYLVEAGHVEFLFAFVNRIVKSRPGANAALLVLWYPQSTDPPPMKRRVA
GGGSRFRLFRTLRATSWTEGRNLLIKAAHDWEEERGYRFEYWTFADEDVT
LYLTGADDRPPSLSAALFPNDPFSAYESLCAASRGAVIMPVGLLYEQDYG
PGCMQEIWIPTAAVEATTGAAALARRRRDASGSGGGVGSWTALVAPVLAF
DGMINTFNRLALPALLPYATDLDDFSWWCSQRVFWAALQCFKDTPSAIVE
SLDVGTVYG
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mRNA from alignment at P-wetherbeei_contig5538:567..2052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5538.1.1 ID=mRNA_P-wetherbeei_contig5538.1.1|Name=mRNA_P-wetherbeei_contig5538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1486bp|location=Sequence derived from alignment at P-wetherbeei_contig5538:567..2052- (Phaeothamnion wetherbeei SAG_119_79)
CGTGCTTTTCTGGGCAGGGTTGCGGCAGGGAGGATGACAGAAGGTTTCTT
GGCCGCGTGCGCGCGTATAGCGGTCTTTGTGCTGCTGAGTTTAGTGGTCA
ACTCTTCTGGGCAAGCCGTCGAAGTGAGGAAGAACCACGCATCAAGTGGC
CATCTGTATCTCGTGGAAGCTGGGCACGTCGAGTTCCTCTTTGCTTTCGT
GAACCGTATAGTGAAAAGTCGGCCAGGAGCCAATGCAGCCCTCCTTGTTC
TGTGGTACCCGCAGTCGACCGATCCACCGCCAATGAAAAGGAGGGTAGCA
GGCGGGGGGTCGCGCTTCCGTCTCTTTCGAACCCTTCGAGCAACTTCCTG
GACAGAGGGCCGCAACCTGCTCATAAAGGCCGCCCATGATTGGGAAGAGG
AACGAGGCTATCGGTGAGCATACATTCTTTGATACTATCGGTGAGCATAC
ATTCTTTGGGGCATCTTTAGGTGCGTGCCGCCCTTGTACTATCAAGAGTT
ATCCGCTTTCCATGACGTTCAAAAATCGAAATTTCTCCTGCCGCCTTCCG
TCATCAAGTACGACTTCGCGGGGCTTCCTGCCCCCTCCCACAACTCTCCC
ACCCTCAAATCTACGCCACACAGGTTCGAGTACTGGACATTCGCCGACGA
GGACGTGACCCTCTACCTGACCGGCGCGGATGACCGACCGCCGAGCCTTT
CGGCCGCGCTATTTCCCAACGATCCCTTTTCAGCATACGAGTCGCTATGC
GCGGCATCCCGTGGGGCGGTCATAATGCCTGTCGGCCTGCTGTACGAGCA
GGACTACGGCCCGGGGTGCATGCAAGAGATCTGGATCCCCACCGCGGCGG
TGGAAGCGACCACGGGGGCGGCGGCGTTAGCCCGGCGACGCCGTGATGCC
TCTGGCAGCGGCGGCGGCGTGGGTTCGTGGACAGCGCTCGTCGCGCCGGT
GCTGGCGTTCGACGGAATGATAAACACTTTCAACCGCCTCGCGCTGCCCG
CGCTCCTGCCGTATGCGACGGACCTGGATGACTTTTCGTGGTGGTGCAGC
CAGCGTGTCTTCTGGGCGGCCCTCCAGTGCTTCAAGGACACGCCGTCGGT
GAGTGCGTGGCTCTTATGCTGGAAGGGATAGCAGAGAAGGGGAGGACGCC
GCGCACAAAGCTTAAGCTTGTTTTTGTTGAATACCTTGTAAACTAGAGCA
GAGGCTCGATATGAGCCGCGTCGCTGACAGTACCAGCGAACAGACTTCCT
TTCCCGGCGGCGTGGGCGTTTTTCTGCGTGAGGGGTATCCCAGCTTGTGT
GCCGCGTCTTCTTGAAATGTGTTAGCTGTGATTGGCCTTTCCGGTTTGGG
TCTTAAAAAGGATTTGTATAGATCGTCTTTAGACGCCGAGTTTACTCTGC
TACACCTAGCTCTAACCTCTTCCTCGCCGTCCGGCTGGCATGGCAGGCTA
TTGTGGAGAGCCTCGACGTGGGGACGGTCTACGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5538:567..2052-

>mRNA_P-wetherbeei_contig5538.1.1 ID=mRNA_P-wetherbeei_contig5538.1.1|Name=mRNA_P-wetherbeei_contig5538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=927bp|location=Sequence derived from alignment at P-wetherbeei_contig5538:567..2052- (Phaeothamnion wetherbeei SAG_119_79)
CGTGCTTTTCTGGGCAGGGTTGCGGCAGGGAGGATGACAGAAGGTTTCTT
GGCCGCGTGCGCGCGTATAGCGGTCTTTGTGCTGCTGAGTTTAGTGGTCA
ACTCTTCTGGGCAAGCCGTCGAAGTGAGGAAGAACCACGCATCAAGTGGC
CATCTGTATCTCGTGGAAGCTGGGCACGTCGAGTTCCTCTTTGCTTTCGT
GAACCGTATAGTGAAAAGTCGGCCAGGAGCCAATGCAGCCCTCCTTGTTC
TGTGGTACCCGCAGTCGACCGATCCACCGCCAATGAAAAGGAGGGTAGCA
GGCGGGGGGTCGCGCTTCCGTCTCTTTCGAACCCTTCGAGCAACTTCCTG
GACAGAGGGCCGCAACCTGCTCATAAAGGCCGCCCATGATTGGGAAGAGG
AACGAGGCTATCGGTTCGAGTACTGGACATTCGCCGACGAGGACGTGACC
CTCTACCTGACCGGCGCGGATGACCGACCGCCGAGCCTTTCGGCCGCGCT
ATTTCCCAACGATCCCTTTTCAGCATACGAGTCGCTATGCGCGGCATCCC
GTGGGGCGGTCATAATGCCTGTCGGCCTGCTGTACGAGCAGGACTACGGC
CCGGGGTGCATGCAAGAGATCTGGATCCCCACCGCGGCGGTGGAAGCGAC
CACGGGGGCGGCGGCGTTAGCCCGGCGACGCCGTGATGCCTCTGGCAGCG
GCGGCGGCGTGGGTTCGTGGACAGCGCTCGTCGCGCCGGTGCTGGCGTTC
GACGGAATGATAAACACTTTCAACCGCCTCGCGCTGCCCGCGCTCCTGCC
GTATGCGACGGACCTGGATGACTTTTCGTGGTGGTGCAGCCAGCGTGTCT
TCTGGGCGGCCCTCCAGTGCTTCAAGGACACGCCGTCGGCTATTGTGGAG
AGCCTCGACGTGGGGACGGTCTACGGC
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