mRNA_P-wetherbeei_contig55303.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55303.1.1
Unique NamemRNA_P-wetherbeei_contig55303.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55303.1.1 vs. uniprot
Match: UPI001AE3C6BD (PD40 domain-containing protein n=1 Tax=Sinorhizobium kostiense TaxID=76747 RepID=UPI001AE3C6BD)

HSP 1 Score: 87.8 bits (216), Expect = 1.280e-17
Identity = 67/168 (39.88%), Postives = 90/168 (53.57%), Query Frame = 1
Query:    7 VSADGRHVAFTSAAA-LTTAPTGGKVQLYVRDRATGTTALAXXXXXXXXXXXXXXAQDDGDVQF----SISRDGRYVVFASRATNLAGADADATQDVYRKDMTTGAVVLVSVDSAGAKANAAVVGDPDVSADGNRISFGSGAATNLAGTDANAASSDVVVRDIAAGTT 495
            +SADGRHVAFTS+A+ L    T G + +YVRD   GTT                  + +GD  F    SIS DGRYV F+S A+NL   D +   D++ +D+  G    VSV S G +AN     +  +SADG  ++F S A+  +AG D N+   DV V D+  GTT
Sbjct:   88 ISADGRHVAFTSSASNLVAGDTNGFIDVYVRDLQLGTTTRVSVDSSGD--------EANGDSNFLELPSISADGRYVAFSSEASNLVAGDTNGVSDIFVRDLHLGTTTRVSVGSVGGQANGGSF-EASISADGRYVAFSSDASNLVAG-DTNSVE-DVFVFDLQRGTT 244          
BLAST of mRNA_P-wetherbeei_contig55303.1.1 vs. uniprot
Match: A0A6N7F2J2_9GAMM (Uncharacterized protein n=2 Tax=Ostreibacterium oceani TaxID=2654998 RepID=A0A6N7F2J2_9GAMM)

HSP 1 Score: 87.8 bits (216), Expect = 4.020e-17
Identity = 70/173 (40.46%), Postives = 87/173 (50.29%), Query Frame = 1
Query:    7 VSADGRHVAFTSAAA-LTTAPTGGKVQLYVRDRATGTTALAXXXXXXXXXXXXXXAQDDGDVQFSISRDGRYVVFASRATNLAGADADATQDVYRKDMTTGAVVLVSVDSAGAKANAAVVGDPDVSADGNRISFGSGAATNLAGTDANAASSDVVVRDIAAGTTVLAAQSTVG 522
            +SADGR+VAF S A  L    T G   ++V D  TG T                   D      SIS DGRYV F SRATNL   D + T DV+  D  TG    VSVDS+G +A+     DP +SADG  ++F S  ATNL   DAN  ++D+ V D   G T   +  +VG
Sbjct:   32 ISADGRYVAFQSFATNLVAGDTNGTTDIFVHDTQTGATTRVSVDSLGTEG-------DSFSTIPSISADGRYVAFNSRATNLVAGDTNGTLDVFVHDTQTGNTTRVSVDSSGVEADG-YSSDPSISADGRYVAFTS-TATNLVAGDANG-NTDIFVHDTQTGDTTRVSVDSVG 194          
BLAST of mRNA_P-wetherbeei_contig55303.1.1 vs. uniprot
Match: UPI0019513C51 (PD40 domain-containing protein n=1 Tax=Micromonospora trujilloniae TaxID=879618 RepID=UPI0019513C51)

HSP 1 Score: 85.1 bits (209), Expect = 3.400e-16
Identity = 71/164 (43.29%), Postives = 86/164 (52.44%), Query Frame = 1
Query:   10 SADGRHVAFTSAAA-LTTAPTGGKVQLYVRDRATGTTALAXXXXXXXXXXXXXXAQDDGDVQF-SISRDGRYVVFASRATNLAGADADATQDVYRKDMTTGAVVLVSVDSAGAKANAAVVGDPDVSADGNRISFGSGAATNLAGTDANAASSDVVVRDIAAGTT 495
            SADGR+VAFTS A  L    T     ++VRDRATG  A                   DGD    +IS DGRYV FAS ATNL   D +  +DV+ +D  TG    VS+ + G +A A   G P +SADG  ++F S A   L   D NA +SDV VRD   GTT
Sbjct:   55 SADGRYVAFTSTATNLVPGDTNHADDVFVRDRATGAIARVSLATGG--------GAGDGDSYLPAISADGRYVAFASTATNLVPGDTNHAEDVFVRDRATGVTTRVSLAADGTEAEAGA-GTPAISADGRYVAFASTAP--LVSDDTNA-TSDVFVRDRVTGTT 206          
BLAST of mRNA_P-wetherbeei_contig55303.1.1 vs. uniprot
Match: A0A554U9S0_9MYCO (Uncharacterized protein n=1 Tax=Mycobacterium sp. KBS0706 TaxID=2578109 RepID=A0A554U9S0_9MYCO)

HSP 1 Score: 85.5 bits (210), Expect = 3.470e-16
Identity = 70/172 (40.70%), Postives = 98/172 (56.98%), Query Frame = 1
Query:    1 AAVSADGRHVAFTSAAA-LTTAPTGGKVQLYVRDRATGTTALAXXXXXXXXXXXXXXAQDDGDVQ-FSISRDGRYVVFASRATNLAGADADATQDVYRKDMTTGAVVLVSV--DSAGAKANAAVVGDPDVSADGNRISFGSGAATNLAGTDANAASSDVVVRDIAAGTTVLA 504
            AA++ DGR+V F S A  L    T   + +++RD  TG T                 +Q +G  Q   ++ +G ++ F S ATNL GAD++   DV+ K+++TGAV  VSV  D + A  N+ V     +S DGNR+SF S  A+NL   D+N A +D+ VRDIAAGTTVLA
Sbjct:   85 AAITDDGRYVFFNSTATNLVGGDTNAVLDVFMRDTQTGVTTRVSTASDG--------SQANGASQNVDVTGNGAFIGFQSTATNLVGADSNGFSDVFVKNLSTGAVTRVSVADDESQANGNSLVA---RLSDDGNRVSFVS-TASNLTANDSNGAVTDIFVRDIAAGTTVLA 244          
BLAST of mRNA_P-wetherbeei_contig55303.1.1 vs. uniprot
Match: A0A399ZN49_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A399ZN49_9CHLR)

HSP 1 Score: 85.5 bits (210), Expect = 3.500e-16
Identity = 69/166 (41.57%), Postives = 90/166 (54.22%), Query Frame = 1
Query:    1 AAVSADGRHVAFTSAAA-LTTAPTGGKVQLYVRDRATGTTALAXXXXXXXXXXXXXXAQDDGDVQFSISRDGRYVVFASRATNLAGADADATQDVYRKDMTTGAVVLVSVDSAGAKANAAVVGDPDVSADGNRISFGSGAATNLAGTDANAASSDVVVRDIAAGTT 495
            AA+S+DGR+VAF S A+ L    T G   +++RDR TG T                 A D  D   +IS DGRYVVF S ATNL   D +   DV+  D  TG    +SV S G++AN++    P +S +G  I+F S A +NLA  D N  + D+ VRD A GTT
Sbjct:   57 AAISSDGRYVAFVSDASNLVLNDTNGVTDVFLRDRQTGVTTRVSVSSSGEQ------ANDFSDFPLAISSDGRYVVFNSDATNLVANDTNGATDVFLHDTQTGVTERISVASDGSQANSSSF-SPAISTNGQFIAFASNA-SNLASGDTNNVA-DLFVRDRATGTT 213          
BLAST of mRNA_P-wetherbeei_contig55303.1.1 vs. uniprot
Match: A0A7U6Y4B8_9PROT (DUF4347 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium LM-1 TaxID=2682548 RepID=A0A7U6Y4B8_9PROT)

HSP 1 Score: 85.1 bits (209), Expect = 4.860e-16
Identity = 62/164 (37.80%), Postives = 87/164 (53.05%), Query Frame = 1
Query:    1 AAVSADGRHVAFTSAAALTTAPTGGKVQLYVRDRATGTTALAXXXXXXXXXXXXXXAQDDGDVQFSISRDGRYVVFASRATNLAGADADATQDVYRKDMTTGAVVLVSVDSAGAKANAAVVGDPDVSADGNRISFGSGAATNLAGTDANAASSDVVVRDIAAGT 492
            A+VS+DGR+++F+S A L       +  ++VRD   GTT                   DD      I+ DGRYVVFAS ATNL   D +   DV+  D+ TG    +SVDS+G +AN      P +S+DG  ++F S +ATNL   D N A+ D+ ++D   GT
Sbjct:  379 ASVSSDGRYISFSSFAPLVAGDANNREDIFVRDTVLGTTTRVSVDSIGTQA-------DDHSFSPMITPDGRYVVFASDATNLISGDTNGISDVFIHDVQTGTTTRISVDSSGNEANNGSY-SPSISSDGRYVAFRS-SATNLVAGDTNVAT-DIFLKDTQTGT 532          
BLAST of mRNA_P-wetherbeei_contig55303.1.1 vs. uniprot
Match: UPI001C7FC217 (Ig-like domain-containing protein n=1 Tax=Opitutus sp. WL0086 TaxID=2866162 RepID=UPI001C7FC217)

HSP 1 Score: 84.7 bits (208), Expect = 6.880e-16
Identity = 67/175 (38.29%), Postives = 93/175 (53.14%), Query Frame = 1
Query:    4 AVSADGRHVAFTSAAA-LTTAPTG-GKVQLYVRDRATGTTALAXXXXXXXXXXXXXXAQDDGDVQFSISRDGRYVVFASRATNLAGADADATQDVYRKDMTTGAVVLVSVDSAGAKANAAVVGDPDVSADGNRISFGSGAATNLAGTDANAASSDVVVRDIAAGTTVLAAQSTVG 522
            A+S DGR+V F S+A  L T  T  G   +++RD  TGTT L               A +D   Q  +S DGRYVVFAS A+NL   DA+ T+D++ +D T G    VSV + G +AN      P +++DG  ++F S AA+NL   D N    D+ V  +A G T   + S+ G
Sbjct:  436 ALSQDGRYVVFESSATNLVTGGTATGVTHIFLRDTQTGTTELISVDGSGA-------AGNDDSTQARVSADGRYVVFASDASNLVAGDANGTRDIFVRDRTAGTTTRVSVATGGTEANG-FSRSPSLTSDGGMVAFSS-AASNLVAGDTNGIP-DIFVHTVATGVTTRVSISSAG 600          
BLAST of mRNA_P-wetherbeei_contig55303.1.1 vs. uniprot
Match: UPI001FB8EF15 (Hint domain-containing protein n=1 Tax=Methylobacterium sp. J-068 TaxID=2836649 RepID=UPI001FB8EF15)

HSP 1 Score: 84.3 bits (207), Expect = 8.560e-16
Identity = 52/99 (52.53%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  199 ISRDGRYVVFASRATNLAGADADATQDVYRKDMTTGAVVLVSVDSAGAKANAAVVGDPDVSADGNRISFGSGAATNLAGTDANAASSDVVVRDIAAGTT 495
            +S DGRYVVF S ATNL   DA++ QD++ KD+ TGAV LVSV S+G + N++   +P +SADG  ++F S A TNL   D N  +SD+ VRD+ AGTT
Sbjct:   28 VSADGRYVVFTSVATNLVTGDANSQQDIFLKDLLTGAVTLVSVASSGTQGNSSST-NPSISADGRYVAFTSNA-TNLVAGDTNG-TSDIFVRDLTAGTT 123          
BLAST of mRNA_P-wetherbeei_contig55303.1.1 vs. uniprot
Match: UPI0014307581 (PD40 domain-containing protein n=1 Tax=Microvirga sp. c23x22 TaxID=2719797 RepID=UPI0014307581)

HSP 1 Score: 84.3 bits (207), Expect = 9.070e-16
Identity = 68/168 (40.48%), Postives = 90/168 (53.57%), Query Frame = 1
Query:    7 VSADGRHVAFTSAAA-LTTAPTGGKVQLYVRDRATGTTALAXXXXXXXXXXXXXXAQDDGDVQFSISRDGRYVVFASRATNLAGADADATQDVYRKDMTTGAVVLVSV--DSAGAKANAAVVGDPDVSADGNRISFGSGAATNLAGTDANAASSDVVVRDIAAGTTVL 501
            ++ADGR+V F S A+ L    + G + ++ +D  TG T L               + +       IS DGRYVVF S ATNL   D +AT DV+RKD+ TG +VLVS   D+ GA+ N  +  D  VSADG  + F SGA  NL   DAN    D+  +D+A G  VL
Sbjct:  522 INADGRYVVFESRASNLVAGDSNGSLDVFRKDLLTGETVLVSTANDAAHTQGNSVSYNA-----QISADGRYVVFTSEATNLVSGDTNATSDVFRKDLMTGEIVLVSRAGDATGAQGNK-ISYDAKVSADGRYVVFTSGA-NNLVAGDANN-QVDIFRKDLATGEIVL 681          
BLAST of mRNA_P-wetherbeei_contig55303.1.1 vs. uniprot
Match: UPI001685A111 (DUF4347 domain-containing protein n=2 Tax=Phormidium sp. FACHB-592 TaxID=2692850 RepID=UPI001685A111)

HSP 1 Score: 84.0 bits (206), Expect = 1.240e-15
Identity = 77/169 (45.56%), Postives = 101/169 (59.76%), Query Frame = 1
Query:    7 VSADGRHVAFTSAAA-LTTAPTGGKVQLYVRDRATGTTALAXXXXXXXXXXXXXXAQDDGDVQFSISRDGRYVVFASRATNLAGADADAT-QDVYRKDMTTGAVVLVSVDSAGAKANAAVVGDPDV--SADGNRISFGSGAATNLAGTDANAASSDVVVRDIAAGTTVL 501
            +S+DGR+V FTS+A+ L    +  +  ++ RD  TGTT L   XXXXXXXXXX  +        S++RDGRYVVFAS A+NL   D + T QDV+R D  TG   LVS +S+G  +     G+ +V  S DG  I+F S  A+NL   D N +  DV VRD+  GTT L
Sbjct:  387 ISSDGRYVTFTSSASNLVANDSNSQADVFRRDLITGTTTLVSVXXXXXXXXXXTASIP------SMTRDGRYVVFASTASNLVTNDTNGTTQDVFRWDSITGVTTLVSANSSGTGSGNGFSGEANVRISDDGRYIAFTS-TASNLVANDINGSFQDVFVRDVETGTTTL 548          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55303.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001AE3C6BD1.280e-1739.88PD40 domain-containing protein n=1 Tax=Sinorhizobi... [more]
A0A6N7F2J2_9GAMM4.020e-1740.46Uncharacterized protein n=2 Tax=Ostreibacterium oc... [more]
UPI0019513C513.400e-1643.29PD40 domain-containing protein n=1 Tax=Micromonosp... [more]
A0A554U9S0_9MYCO3.470e-1640.70Uncharacterized protein n=1 Tax=Mycobacterium sp. ... [more]
A0A399ZN49_9CHLR3.500e-1641.57Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
A0A7U6Y4B8_9PROT4.860e-1637.80DUF4347 domain-containing protein n=1 Tax=Rhodospi... [more]
UPI001C7FC2176.880e-1638.29Ig-like domain-containing protein n=1 Tax=Opitutus... [more]
UPI001FB8EF158.560e-1652.53Hint domain-containing protein n=1 Tax=Methylobact... [more]
UPI00143075819.070e-1640.48PD40 domain-containing protein n=1 Tax=Microvirga ... [more]
UPI001685A1111.240e-1545.56DUF4347 domain-containing protein n=2 Tax=Phormidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55303contigP-wetherbeei_contig55303:2..523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog357808.RoseRS_0010
PFAMsPD40
Model size522
Max annot lvl32061|Chloroflexia
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.33e-16
EggNOG OGsCOG0823@1|root,COG0823@2|Bacteria,2G8T5@200795|Chloroflexi,376FH@32061|Chloroflexia
DescriptionWD40-like Beta Propeller Repeat
Cds size522
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.5656357-CDS-P-wetherbeei_contig55303:1..5231683186824.5656357-CDS-P-wetherbeei_contig55303:1..523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55303 2..523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55303.1.1prot_P-wetherbeei_contig55303.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55303 2..523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55303.1.1

>prot_P-wetherbeei_contig55303.1.1 ID=prot_P-wetherbeei_contig55303.1.1|Name=mRNA_P-wetherbeei_contig55303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
AAVSADGRHVAFTSAAALTTAPTGGKVQLYVRDRATGTTALASASAAGAA
SDADVDAQDDGDVQFSISRDGRYVVFASRATNLAGADADATQDVYRKDMT
TGAVVLVSVDSAGAKANAAVVGDPDVSADGNRISFGSGAATNLAGTDANA
ASSDVVVRDIAAGTTVLAAQSTVG
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mRNA from alignment at P-wetherbeei_contig55303:2..523-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55303.1.1 ID=mRNA_P-wetherbeei_contig55303.1.1|Name=mRNA_P-wetherbeei_contig55303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig55303:2..523- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCGTCTCGGCCGACGGACGCCATGTGGCGTTCACCTCGGCGGCCGC CCTCACCACCGCGCCGACCGGAGGGAAGGTCCAGCTCTATGTCCGCGACC GCGCCACCGGCACGACCGCCCTCGCCTCGGCGTCGGCGGCGGGCGCCGCC TCCGATGCCGACGTGGATGCCCAGGACGACGGCGACGTGCAGTTCTCGAT CTCCCGCGACGGCCGCTACGTCGTGTTCGCCTCCCGGGCCACGAACCTCG CCGGAGCCGATGCGGACGCAACTCAGGACGTCTACCGCAAGGACATGACC ACGGGTGCCGTGGTCCTCGTCTCGGTCGACTCGGCCGGTGCCAAGGCCAA CGCGGCGGTCGTCGGCGACCCGGACGTCTCGGCCGACGGCAACCGGATCT CGTTCGGATCGGGCGCCGCGACGAACCTCGCCGGCACGGACGCCAACGCC GCGTCGTCCGACGTCGTCGTGCGCGACATCGCGGCCGGCACGACGGTGCT CGCCGCGCAGAGCACCGTCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55303:2..523-

>mRNA_P-wetherbeei_contig55303.1.1 ID=mRNA_P-wetherbeei_contig55303.1.1|Name=mRNA_P-wetherbeei_contig55303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig55303:2..523- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCGTCTCGGCCGACGGACGCCATGTGGCGTTCACCTCGGCGGCCGC
CCTCACCACCGCGCCGACCGGAGGGAAGGTCCAGCTCTATGTCCGCGACC
GCGCCACCGGCACGACCGCCCTCGCCTCGGCGTCGGCGGCGGGCGCCGCC
TCCGATGCCGACGTGGATGCCCAGGACGACGGCGACGTGCAGTTCTCGAT
CTCCCGCGACGGCCGCTACGTCGTGTTCGCCTCCCGGGCCACGAACCTCG
CCGGAGCCGATGCGGACGCAACTCAGGACGTCTACCGCAAGGACATGACC
ACGGGTGCCGTGGTCCTCGTCTCGGTCGACTCGGCCGGTGCCAAGGCCAA
CGCGGCGGTCGTCGGCGACCCGGACGTCTCGGCCGACGGCAACCGGATCT
CGTTCGGATCGGGCGCCGCGACGAACCTCGCCGGCACGGACGCCAACGCC
GCGTCGTCCGACGTCGTCGTGCGCGACATCGCGGCCGGCACGACGGTGCT
CGCCGCGCAGAGCACCGTCGGC
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