mRNA_P-wetherbeei_contig5519.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5519.1.1
Unique NamemRNA_P-wetherbeei_contig5519.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5519.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5519contigP-wetherbeei_contig5519:3028..3823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog72019.SARC_01564T0
Preferred nameFAM46A
PFAMsNTP_transf_7
Model size796
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0043489,GO:0044424,GO:0044464,GO:0045934,GO:0048255,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070566,GO:0080090,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:1990817
Exons1
Evalue6.97e-07
EggNOG OGsCOG0666@1|root,KOG3852@1|root,KOG3852@2759|Eukaryota,KOG4177@2759|Eukaryota,38F2Q@33154|Opisthokonta
DescriptionFamily with sequence similarity 46, member
Cds size795
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186823.0932941-CDS-P-wetherbeei_contig5519:3028..38231683186823.0932941-CDS-P-wetherbeei_contig5519:3028..3823Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5519 3029..3823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5519.1.1prot_P-wetherbeei_contig5519.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5519 3029..3823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5519.1.1

>prot_P-wetherbeei_contig5519.1.1 ID=prot_P-wetherbeei_contig5519.1.1|Name=mRNA_P-wetherbeei_contig5519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=265bp
DTTANAAAAAAAVAFGSAANDSALRQELLDLVERADDAAALDVRLHAALG
GPSVAGGTMAAPLLGRALLDGGGVGCAQPPNKRQRRNLLQQCARYGRSRC
LALLLRDYAADRNAATVGDGFTASHFAAFHGHIGSLLVLAAYGADPALRN
SAGETVAEAALVGGHPAAAATLRAFWRRPALVLGYGTGGYGSSYGSSCGG
CTVGMPVVTPVRMAGAPAARCRVLQENLAFAMNRHRRAPGSGAVTRWSRC
LPPDGPPGVTTTAAA
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mRNA from alignment at P-wetherbeei_contig5519:3028..3823-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5519.1.1 ID=mRNA_P-wetherbeei_contig5519.1.1|Name=mRNA_P-wetherbeei_contig5519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=796bp|location=Sequence derived from alignment at P-wetherbeei_contig5519:3028..3823- (Phaeothamnion wetherbeei SAG_119_79)
GACACCACAGCCAACGCCGCCGCCGCCGCCGCCGCCGTCGCATTTGGATC
CGCCGCGAACGACAGTGCGTTGCGCCAGGAACTGCTCGATCTGGTGGAGC
GCGCCGATGATGCCGCAGCGCTGGATGTCCGCCTCCATGCCGCCCTCGGT
GGCCCTTCCGTTGCTGGCGGCACAATGGCGGCGCCACTGCTCGGCCGCGC
GCTGCTGGATGGCGGCGGCGTCGGCTGCGCGCAGCCGCCGAACAAGCGGC
AGCGGCGCAATCTGCTGCAGCAGTGCGCACGCTATGGCCGCTCTCGCTGT
CTGGCGCTGCTTCTCCGGGACTACGCGGCCGATCGGAACGCCGCCACCGT
CGGCGACGGCTTCACCGCGAGCCATTTCGCGGCGTTCCATGGACACATCG
GTTCGCTGCTCGTCCTGGCGGCGTACGGTGCAGATCCCGCGTTGCGCAAC
TCGGCGGGCGAAACAGTCGCGGAGGCGGCGCTGGTCGGTGGCCACCCGGC
CGCCGCCGCGACGCTCCGAGCCTTCTGGCGCCGCCCGGCGCTCGTCCTCG
GTTACGGTACCGGCGGTTACGGCAGCAGTTACGGCAGCAGCTGCGGTGGT
TGCACCGTCGGCATGCCCGTCGTGACACCGGTGAGAATGGCCGGCGCGCC
TGCCGCGCGCTGTCGGGTTCTGCAGGAAAACCTCGCGTTTGCGATGAACC
GCCACCGCCGGGCGCCGGGCAGCGGAGCGGTGACCCGCTGGAGCCGCTGC
CTGCCGCCGGACGGCCCGCCAGGAGTGACGACGACGGCGGCTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5519:3028..3823-

>mRNA_P-wetherbeei_contig5519.1.1 ID=mRNA_P-wetherbeei_contig5519.1.1|Name=mRNA_P-wetherbeei_contig5519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig5519:3028..3823- (Phaeothamnion wetherbeei SAG_119_79)
GACACCACAGCCAACGCCGCCGCCGCCGCCGCCGCCGTCGCATTTGGATC
CGCCGCGAACGACAGTGCGTTGCGCCAGGAACTGCTCGATCTGGTGGAGC
GCGCCGATGATGCCGCAGCGCTGGATGTCCGCCTCCATGCCGCCCTCGGT
GGCCCTTCCGTTGCTGGCGGCACAATGGCGGCGCCACTGCTCGGCCGCGC
GCTGCTGGATGGCGGCGGCGTCGGCTGCGCGCAGCCGCCGAACAAGCGGC
AGCGGCGCAATCTGCTGCAGCAGTGCGCACGCTATGGCCGCTCTCGCTGT
CTGGCGCTGCTTCTCCGGGACTACGCGGCCGATCGGAACGCCGCCACCGT
CGGCGACGGCTTCACCGCGAGCCATTTCGCGGCGTTCCATGGACACATCG
GTTCGCTGCTCGTCCTGGCGGCGTACGGTGCAGATCCCGCGTTGCGCAAC
TCGGCGGGCGAAACAGTCGCGGAGGCGGCGCTGGTCGGTGGCCACCCGGC
CGCCGCCGCGACGCTCCGAGCCTTCTGGCGCCGCCCGGCGCTCGTCCTCG
GTTACGGTACCGGCGGTTACGGCAGCAGTTACGGCAGCAGCTGCGGTGGT
TGCACCGTCGGCATGCCCGTCGTGACACCGGTGAGAATGGCCGGCGCGCC
TGCCGCGCGCTGTCGGGTTCTGCAGGAAAACCTCGCGTTTGCGATGAACC
GCCACCGCCGGGCGCCGGGCAGCGGAGCGGTGACCCGCTGGAGCCGCTGC
CTGCCGCCGGACGGCCCGCCAGGAGTGACGACGACGGCGGCTGCT
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