mRNA_P-wetherbeei_contig54992.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54992.1.1
Unique NamemRNA_P-wetherbeei_contig54992.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54992.1.1 vs. uniprot
Match: UPI001C219689 (alpha/beta hydrolase n=1 Tax=Nocardioides sp. G188 TaxID=2849501 RepID=UPI001C219689)

HSP 1 Score: 78.6 bits (192), Expect = 7.860e-16
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   25 TYASAVDGLPIAVYDWHATAPAAIVVISHGAAEHALRYDRFARALNAAGFTVRAPDQRGHGAS 213
            ++ S VDGL +A Y+WH      +V ++HG AEH+ RYDRFARALN AG+TVRA D RGHGAS
Sbjct:    7 SFTSPVDGLELAGYEWHVADARGVVQVAHGLAEHSARYDRFARALNEAGYTVRALDHRGHGAS 69          
BLAST of mRNA_P-wetherbeei_contig54992.1.1 vs. uniprot
Match: UPI0015531F43 (alpha/beta hydrolase n=1 Tax=Nocardioides sp. zg-1230 TaxID=2736601 RepID=UPI0015531F43)

HSP 1 Score: 78.2 bits (191), Expect = 1.100e-15
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   25 TYASAVDGLPIAVYDWHATAPAAIVVISHGAAEHALRYDRFARALNAAGFTVRAPDQRGHGAS 213
            T+ S VD L +A Y+W  + P  +V ++HG AEH+ RYDRFARALN AG+TVRA D RGHGAS
Sbjct:    7 TFTSPVDDLELATYEWDVSDPRGVVQVAHGLAEHSARYDRFARALNDAGYTVRAIDHRGHGAS 69          
BLAST of mRNA_P-wetherbeei_contig54992.1.1 vs. uniprot
Match: A0A7W0IY30_9DELT (Lysophospholipase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7W0IY30_9DELT)

HSP 1 Score: 73.9 bits (180), Expect = 4.350e-14
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   13 DKSWTYASAVDGLPIAVYDWHATAPAAIVVISHGAAEHALRYDRFARALNAAGFTVRAPDQRGHGAS 213
            D  + + S VD L I  Y W A  P A++VI+HGAAEHALRY+RFAR+LNA+G  V A D RGHG S
Sbjct:    3 DNMFRFDSEVDALSIQTYVWQAENPKAMMVIAHGAAEHALRYERFARSLNASGIEVWAMDHRGHGQS 69          
BLAST of mRNA_P-wetherbeei_contig54992.1.1 vs. uniprot
Match: A0A0Q4RUV9_9BURK (Alpha/beta hydrolase n=4 Tax=Burkholderiales TaxID=80840 RepID=A0A0Q4RUV9_9BURK)

HSP 1 Score: 72.8 bits (177), Expect = 1.280e-13
Identity = 41/71 (57.75%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 LAGMDKSWTYASAVDGLPIAVYDWHATA--PAAIVVISHGAAEHALRYDRFARALNAAGFTVRAPDQRGHG 207
            L     S ++ SA DG  IA Y W   A  PA +V ISHG AEH  RYDRFA+ALNAAGF V A D RGHG
Sbjct:    4 LISSSSSSSFPSAADGTQIATYTWANVAGKPAGVVQISHGLAEHGERYDRFAKALNAAGFVVHAVDHRGHG 74          
BLAST of mRNA_P-wetherbeei_contig54992.1.1 vs. uniprot
Match: A0A1H0HWP3_9ACTN (Lysophospholipase, alpha-beta hydrolase superfamily n=2 Tax=Geodermatophilaceae TaxID=85030 RepID=A0A1H0HWP3_9ACTN)

HSP 1 Score: 70.9 bits (172), Expect = 6.280e-13
Identity = 39/70 (55.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   10 MDKSWTYASAVDGLPIAVYDWHATA--PAAIVVISHGAAEHALRYDRFARALNAAGFTVRAPDQRGHGAS 213
            M  + ++ S  DGL IA Y+W      P  +V + HG AEH  RYDRFARALNAAGF V A D RGHGAS
Sbjct:    1 MPTTASFPSPADGLAIATYEWDDVTGGPVGVVQLVHGLAEHGPRYDRFARALNAAGFLVSAADNRGHGAS 70          
BLAST of mRNA_P-wetherbeei_contig54992.1.1 vs. uniprot
Match: A0A1Y5U059_9PROT (Phospholipase YtpA n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5U059_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 7.280e-13
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   16 KSWTYASAVDGLPIAVYDWHATAPAAIVVISHGAAEHALRYDRFARALNAAGFTVRAPDQRGHGAS 213
            +S+++A   DGL I   +W   AP A+V+++HG AEHA RY+ FARALN AG+ V APD RGHG S
Sbjct:    5 RSFSFAGE-DGLDIQTVEWPLDAPRAVVIVAHGMAEHASRYEGFARALNGAGYAVYAPDHRGHGRS 69          
BLAST of mRNA_P-wetherbeei_contig54992.1.1 vs. uniprot
Match: A0A1H0EE04_9ACTN (Lysophospholipase, alpha-beta hydrolase superfamily n=1 Tax=Klenkia soli TaxID=1052260 RepID=A0A1H0EE04_9ACTN)

HSP 1 Score: 70.1 bits (170), Expect = 1.190e-12
Identity = 39/65 (60.00%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   25 TYASAVDGLPIAVYDWHATA--PAAIVVISHGAAEHALRYDRFARALNAAGFTVRAPDQRGHGAS 213
            T+ S  DGLPIA Y W      P  +V + HG AEH  RYDRFARAL AAGF V A D RGHGAS
Sbjct:    4 TFPSPADGLPIATYTWDDVPGEPVGVVQLVHGLAEHGPRYDRFARALVAAGFVVSAADNRGHGAS 68          
BLAST of mRNA_P-wetherbeei_contig54992.1.1 vs. uniprot
Match: UPI001E4AD4E2 (alpha/beta hydrolase n=1 Tax=Propioniciclava soli TaxID=2775081 RepID=UPI001E4AD4E2)

HSP 1 Score: 69.3 bits (168), Expect = 2.280e-12
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   10 MDKSWTYASAVDGLPIAVYDWHATAPAAIVVISHGAAEHALRYDRFARALNAAGFTVRAPDQRGHGAS 213
            M ++  + S  D + +A Y W   AP  +V I+HG AEH+ RYDR ARALNAAG+ V A D RGHGAS
Sbjct:    1 MQRTDAFVSPSDQIALARYAWPVDAPRGVVQIAHGLAEHSARYDRLARALNAAGYAVAAIDHRGHGAS 68          
BLAST of mRNA_P-wetherbeei_contig54992.1.1 vs. uniprot
Match: A0A1G4XRE1_9ACTN (Lysophospholipase, alpha-beta hydrolase superfamily n=1 Tax=Klenkia marina TaxID=1960309 RepID=A0A1G4XRE1_9ACTN)

HSP 1 Score: 69.3 bits (168), Expect = 2.290e-12
Identity = 39/65 (60.00%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   25 TYASAVDGLPIAVYDWH--ATAPAAIVVISHGAAEHALRYDRFARALNAAGFTVRAPDQRGHGAS 213
            T+ S  DGL IA Y W      P  +V + HG AEH  RYDRFARALNAAGF V A D RGHGAS
Sbjct:    4 TFPSPADGLLIATYLWDDVPAEPVGVVQVVHGLAEHGPRYDRFARALNAAGFVVSAADNRGHGAS 68          
BLAST of mRNA_P-wetherbeei_contig54992.1.1 vs. uniprot
Match: UPI001C453C09 (alpha/beta hydrolase n=2 Tax=Acidovorax TaxID=12916 RepID=UPI001C453C09)

HSP 1 Score: 69.3 bits (168), Expect = 2.370e-12
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   19 SWTYASAVDGLPIAVYDWHATA--PAAIVVISHGAAEHALRYDRFARALNAAGFTVRAPDQRGHG 207
            S ++ S+ DG+P+  Y W  T   P   V ISHG AEH  RYDRFA+ALNAAGF V A D RGHG
Sbjct:    6 SSSFLSSADGIPVITYTWAETPGKPVGAVQISHGLAEHGERYDRFAKALNAAGFIVHAVDHRGHG 70          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54992.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C2196897.860e-1660.32alpha/beta hydrolase n=1 Tax=Nocardioides sp. G188... [more]
UPI0015531F431.100e-1560.32alpha/beta hydrolase n=1 Tax=Nocardioides sp. zg-1... [more]
A0A7W0IY30_9DELT4.350e-1458.21Lysophospholipase n=1 Tax=Desulfobacteraceae bacte... [more]
A0A0Q4RUV9_9BURK1.280e-1357.75Alpha/beta hydrolase n=4 Tax=Burkholderiales TaxID... [more]
A0A1H0HWP3_9ACTN6.280e-1355.71Lysophospholipase, alpha-beta hydrolase superfamil... [more]
A0A1Y5U059_9PROT7.280e-1354.55Phospholipase YtpA n=1 Tax=Oceanibacterium hippoca... [more]
A0A1H0EE04_9ACTN1.190e-1260.00Lysophospholipase, alpha-beta hydrolase superfamil... [more]
UPI001E4AD4E22.280e-1252.94alpha/beta hydrolase n=1 Tax=Propioniciclava soli ... [more]
A0A1G4XRE1_9ACTN2.290e-1260.00Lysophospholipase, alpha-beta hydrolase superfamil... [more]
UPI001C453C092.370e-1256.92alpha/beta hydrolase n=2 Tax=Acidovorax TaxID=1291... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54992contigP-wetherbeei_contig54992:301..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog408672.NBCG_01842
PFAMsHydrolase_4
Model size213
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.53e-12
EggNOG OGsCOG2267@1|root,COG2267@2|Bacteria,2GPA8@201174|Actinobacteria,4DRD1@85009|Propionibacteriales
DescriptionSerine aminopeptidase, S33
Cds size204
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186820.0381687-UTR-P-wetherbeei_contig54992:300..3091683186820.0381687-UTR-P-wetherbeei_contig54992:300..309Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54992 301..309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186820.0527325-CDS-P-wetherbeei_contig54992:309..5131683186820.0527325-CDS-P-wetherbeei_contig54992:309..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54992 310..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54992.1.1prot_P-wetherbeei_contig54992.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54992 310..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54992.1.1

>prot_P-wetherbeei_contig54992.1.1 ID=prot_P-wetherbeei_contig54992.1.1|Name=mRNA_P-wetherbeei_contig54992.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
MDKSWTYASAVDGLPIAVYDWHATAPAAIVVISHGAAEHALRYDRFARAL
NAAGFTVRAPDQRGHGAS
back to top

mRNA from alignment at P-wetherbeei_contig54992:301..513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54992.1.1 ID=mRNA_P-wetherbeei_contig54992.1.1|Name=mRNA_P-wetherbeei_contig54992.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig54992:301..513+ (Phaeothamnion wetherbeei SAG_119_79)
CTAGCAGGGATGGACAAGTCCTGGACGTATGCGTCGGCAGTCGATGGATT GCCGATTGCGGTTTATGACTGGCATGCAACGGCGCCAGCGGCCATCGTTG TAATCTCGCACGGCGCAGCCGAGCATGCGTTGCGCTACGACCGGTTCGCG CGCGCCTTGAATGCCGCCGGCTTCACGGTTCGGGCGCCGGACCAGCGCGG CCACGGAGCGTCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig54992:301..513+

>mRNA_P-wetherbeei_contig54992.1.1 ID=mRNA_P-wetherbeei_contig54992.1.1|Name=mRNA_P-wetherbeei_contig54992.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig54992:301..513+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAAGTCCTGGACGTATGCGTCGGCAGTCGATGGATTGCCGATTGC
GGTTTATGACTGGCATGCAACGGCGCCAGCGGCCATCGTTGTAATCTCGC
ACGGCGCAGCCGAGCATGCGTTGCGCTACGACCGGTTCGCGCGCGCCTTG
AATGCCGCCGGCTTCACGGTTCGGGCGCCGGACCAGCGCGGCCACGGAGC
GTCC
back to top