mRNA_P-wetherbeei_contig54922.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54922.1.1
Unique NamemRNA_P-wetherbeei_contig54922.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54922.1.1 vs. uniprot
Match: A0A521S2F5_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A521S2F5_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 5.580e-5
Identity = 32/91 (35.16%), Postives = 41/91 (45.05%), Query Frame = 1 
Query:    1 DPTPIAPTAVRETQTINQDGGRFAAFETLTVTYSRATRQRVESRISATTEA-PDAGEPG--VRIERADRKVAWTLDAAQKRYVQCPLGGCP 264
            D  P  PTAV E+   N       A E   +  +R   QR++     T        +P     I R DR + W LD  +KRY +CPLGGCP
Sbjct:   25 DTAPRHPTAVVESYVHNFGFKGMFASEGSEIVRTRPEMQRIDQEFQFTGAIMKHLSKPASSAMIGRVDRNLLWMLDKKEKRYTECPLGGCP 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54922.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A521S2F5_9BACT5.580e-535.16Uncharacterized protein (Fragment) n=1 Tax=Nitrosp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54922contigP-wetherbeei_contig54922:44..313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size270
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.076038-CDS-P-wetherbeei_contig54922:43..3131683186819.076038-CDS-P-wetherbeei_contig54922:43..313Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54922 44..313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54922.1.1prot_P-wetherbeei_contig54922.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54922 44..313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54922.1.1

>prot_P-wetherbeei_contig54922.1.1 ID=prot_P-wetherbeei_contig54922.1.1|Name=mRNA_P-wetherbeei_contig54922.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
DPTPIAPTAVRETQTINQDGGRFAAFETLTVTYSRATRQRVESRISATTE
APDAGEPGVRIERADRKVAWTLDAAQKRYVQCPLGGCPGA
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mRNA from alignment at P-wetherbeei_contig54922:44..313-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54922.1.1 ID=mRNA_P-wetherbeei_contig54922.1.1|Name=mRNA_P-wetherbeei_contig54922.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig54922:44..313- (Phaeothamnion wetherbeei SAG_119_79)
GACCCCACACCGATCGCGCCGACCGCGGTGCGGGAAACCCAGACCATCAA
CCAGGACGGTGGACGATTCGCCGCCTTCGAAACCTTGACCGTGACTTACT
CGCGGGCGACCAGGCAGCGCGTCGAGTCCCGCATCAGCGCCACAACGGAG
GCGCCGGACGCCGGTGAGCCCGGCGTGCGCATCGAGCGCGCGGACCGCAA
GGTGGCCTGGACACTGGATGCCGCGCAAAAACGCTATGTCCAATGCCCGC
TCGGCGGCTGCCCCGGCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54922:44..313-

>mRNA_P-wetherbeei_contig54922.1.1 ID=mRNA_P-wetherbeei_contig54922.1.1|Name=mRNA_P-wetherbeei_contig54922.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig54922:44..313- (Phaeothamnion wetherbeei SAG_119_79)
GACCCCACACCGATCGCGCCGACCGCGGTGCGGGAAACCCAGACCATCAA
CCAGGACGGTGGACGATTCGCCGCCTTCGAAACCTTGACCGTGACTTACT
CGCGGGCGACCAGGCAGCGCGTCGAGTCCCGCATCAGCGCCACAACGGAG
GCGCCGGACGCCGGTGAGCCCGGCGTGCGCATCGAGCGCGCGGACCGCAA
GGTGGCCTGGACACTGGATGCCGCGCAAAAACGCTATGTCCAATGCCCGC
TCGGCGGCTGCCCCGGCGCG
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