mRNA_P-wetherbeei_contig54918.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54918.1.1
Unique NamemRNA_P-wetherbeei_contig54918.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54918.1.1 vs. uniprot
Match: UPI0003B6061D (DUF4394 domain-containing protein n=1 Tax=Nevskia ramosa TaxID=64002 RepID=UPI0003B6061D)

HSP 1 Score: 226 bits (575), Expect = 2.370e-66
Identity = 118/173 (68.21%), Postives = 138/173 (79.77%), Query Frame = 1
Query:    1 GAASELCPLIADPADATLPFTALPADASFGIGFNPVPDRLRVTTSTGLNLRINTNPNDEGKCLVTTDTELTGATSVTGVGYTNAIPGTVSTTLYAIDSGADTFVRIGGNPANGIAGDPGNPNSGVATTIGSLGIGDVGDNSAFAVDGRNNAALLAAAETGASASTLYTVNLAT 519
            G A+ LC L  DPAD TLP++ LP  AS+G+GFNPVPDRLRV   +GLNLRIN NPN  G+CLVTTDT ++GA+S++G  YTNA+P   +TTLYAIDSGAD  V+IG NPANGIA DPGNPNSGVA+TIG+LG GDVG   AF +DGRNN ALLA +  GA+ASTLYTVNL T
Sbjct:  362 GVAAALCALATDPADTTLPYSVLPTGASYGVGFNPVPDRLRVIADSGLNLRINPNPNPAGQCLVTTDTAISGASSLSGAAYTNAVPAAGTTTLYAIDSGADALVQIGSNPANGIADDPGNPNSGVASTIGALGAGDVGKVDAFLIDGRNNTALLATSVAGAAASTLYTVNLTT 534          
BLAST of mRNA_P-wetherbeei_contig54918.1.1 vs. uniprot
Match: A0A346N437_9GAMM (DUF4394 domain-containing protein n=1 Tax=Solimonas sp. K1W22B-7 TaxID=2303331 RepID=A0A346N437_9GAMM)

HSP 1 Score: 129 bits (325), Expect = 1.230e-31
Identity = 82/162 (50.62%), Postives = 104/162 (64.20%), Query Frame = 1
Query:   61 TALPADA-SFGIGFNPVPDRLRVTTSTGLNLRINTNPNDEGKCLVTTDTELTGATSVTGVGYTNAIPGTV--------STTLYAIDSGADTFVRIGGNPANGIAGDPGNPNSGVATTIGSLGIGDVGDNSAFAVDGRNNAALLAAAETGASASTLYTVNLAT 519
            TALP    SFG+ FNPVPDRLR+T + GLNLR+N    D      TTDT L+ AT V+G  Y+N++            STTL+ I++  D+ VRIG +PA+G+A DPGNPNSGV   +G+LG+   G N A  +DG N  ALLAA   G++ S LYTVNLAT
Sbjct:  386 TALPTTVFSFGVDFNPVPDRLRITAANGLNLRVNPETGD-----TTTDTALS-ATDVSGAAYSNSLRSAAALAASNGGSTTLFGINNATDSLVRIGSDPASGVAADPGNPNSGVVNNVGALGVAIEGTN-ALEIDGLNGQALLAAFSAGSTTSQLYTVNLAT 540          
BLAST of mRNA_P-wetherbeei_contig54918.1.1 vs. uniprot
Match: A0A3N0VMG1_9GAMM (DUF4394 domain-containing protein n=2 Tax=Sinobacteraceae TaxID=568386 RepID=A0A3N0VMG1_9GAMM)

HSP 1 Score: 118 bits (295), Expect = 1.320e-27
Identity = 82/185 (44.32%), Postives = 112/185 (60.54%), Query Frame = 1
Query:    1 GAASELCPLIADPADATLPFTALPADASFGIGFNPVPDRLRVTTSTGLNLRINTNPNDEGKCLVTTDTELT------GATSVTGVGYTNAIPG----TVSTTLYAIDSGADTFVRIGGNPANGIAGDPGNPNSGVATTIGSLGIG----DVGDNSAFAVDGRNNAALLAAAETGASASTLYTVNL 513
            GAA+ +  L AD  DA+ P+  L   ++FG+ FNPVPDRLRV + +G NLRIN    D G    TTDT LT      G + ++   YTN++ G    +++TTLYA+DS  D  VRIG +PANG+AGDPGNPNSGV   + +L  G    D+  ++AF + G    AL+       S STLY+++L
Sbjct:  366 GAATLVSTLAADSGDASAPYAGLDG-SNFGVDFNPVPDRLRVVSDSGQNLRINV---DTGA--TTTDTGLTTAGVEGGRSGISAAAYTNSLAGGNAASLATTLYALDSSTDALVRIGNDPANGVAGDPGNPNSGVVAPVAALTSGGAAFDLAASNAFEIIGSTGGALVT------SGSTLYSLSL 538          
BLAST of mRNA_P-wetherbeei_contig54918.1.1 vs. uniprot
Match: A0A4Q6BLU9_9PROT (DUF4394 domain-containing protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6BLU9_9PROT)

HSP 1 Score: 115 bits (288), Expect = 4.290e-27
Identity = 85/174 (48.85%), Postives = 104/174 (59.77%), Query Frame = 1
Query:    1 GAASELCPLIADPADATLPFTALPADASFGIGFNPVPDRLRVTTSTGLNLRINTNPNDEGKCLVTTDTELTGATS-VTGVGYTNAIPGTVSTTLYAIDSGADTFVRIGGNPANGIAGDPGNPNSGVATTIGSLGIGDVGDNSAFAVDGRNNAALLAAAETGASASTLYTVNLAT 519
            GAA+    L AD +D T PFTAL   ASFG+ FNPVPDRLRV ++TG NLRIN    D G    TTD  L  A S VT   YTN+  G+ +TTLY +DS  D  + I G P+       GNPNSG    IG+L +GD+  +  F + G NNAA L     GA+ S L+T+NLAT
Sbjct:  184 GAATLKSTLAADASDTTSPFTALEG-ASFGVDFNPVPDRLRVVSNTGQNLRINV---DTGA--TTTDAVLNPAGSAVTSAAYTNSFAGSDATTLYVLDSAGDRLM-IQGQPS-------GNPNSGDLAAIGALNVGDLQASGGFDISGANNAATLIGNLAGATTSDLFTLNLAT 343          
BLAST of mRNA_P-wetherbeei_contig54918.1.1 vs. uniprot
Match: A0A2S5TLU2_9GAMM (Uncharacterized protein n=1 Tax=Solimonas fluminis TaxID=2086571 RepID=A0A2S5TLU2_9GAMM)

HSP 1 Score: 100 bits (248), Expect = 2.710e-21
Identity = 76/171 (44.44%), Postives = 102/171 (59.65%), Query Frame = 1
Query:   61 TALPADASFGIGFNPVPDRLRVTTSTGLNLRINTNPNDEGKCLVTTDTELTGATS--VTGVGYTNAIPGTV-------STTLYAIDSGADTFVRIGGNPANG--------IAGDPGNPNSGVATTIG-SLGIGDVGDNSAFAVDGRNNAALLAAAETGASASTLYTVNLAT 519
            TALPA +SFG+ FNPVPDRLRV  + G+NLRI+  P       VTTD  L+GA++  VT V Y+N++           STTL+ +D+     VRIG +PA+G           D GNPN GV + +G +LG+ D+   SA  +DG N AA +  + +GA +S LY VNLAT
Sbjct:  375 TALPAGSSFGMDFNPVPDRLRVVAANGVNLRID--PRAGITPNVTTDEPLSGASTADVTAVAYSNSLRSAAENLNSGASTTLFGVDTRRGRLVRIGSDPASGGSCRPMAPAVPDAGNPNCGVVSDVGGALGV-DLEAVSAMEIDGANGAAWVVGSISGAGSSQLYPVNLAT 542          
BLAST of mRNA_P-wetherbeei_contig54918.1.1 vs. uniprot
Match: A0A2G8TG78_9BURK (DNA polymerase I n=1 Tax=Massilia eurypsychrophila TaxID=1485217 RepID=A0A2G8TG78_9BURK)

HSP 1 Score: 85.5 bits (210), Expect = 3.040e-16
Identity = 73/177 (41.24%), Postives = 94/177 (53.11%), Query Frame = 1
Query:    1 GAASELCPLIADPADATLPFTALPADASFGIGFNPVPDRLRVTTSTGLNLRINTNPNDEGKCLVTTDTELTGATS---VTGVGYTNAIPGTVSTTLYAIDSGADTFVRIGGNPANGIAGDPGNPNSGVATTIGSLGIGDVGDNSAFAVDGRNNAALLAAAETGASA-STLYTVNLAT 519
            GAA+    L AD AD T PF  +   A F + FNPV DRLRV ++TG +LRIN    D G    TTD  +  A +   VTG  YTN+  GT +T+L+ ID+ ADT      NP          PN G  + +G+LG+   GD  AF + G  N   LAA  T A   S+LY ++L T
Sbjct:  359 GAATVKATLAADAADTTNPFAGISGTA-FAVDFNPVADRLRVISNTGQSLRINA---DTGA--TTTDGAINAAGALPIVTGAAYTNSFAGTTATSLFDIDTAADTLALQ--NP----------PNDGTLSNVGALGVNANGD-VAFDIAGGTNGLALAALRTSAGGPSSLYRIDLVT 516          
BLAST of mRNA_P-wetherbeei_contig54918.1.1 vs. uniprot
Match: A0A1M5K8S5_9GAMM (Calx-beta domain-containing protein n=1 Tax=Hydrocarboniphaga daqingensis TaxID=490188 RepID=A0A1M5K8S5_9GAMM)

HSP 1 Score: 84.3 bits (207), Expect = 8.770e-16
Identity = 71/168 (42.26%), Postives = 91/168 (54.17%), Query Frame = 1
Query:   25 LIADPADATLPFTALPADASFGIGFNPVPDRLRVTTSTGLNLRINTNPNDEGKCLVTTDTELTGATSVTGVGYTNAIPGTVSTTLYAIDSGADTFVRIGGNPANGIAGDPGNPNSGVATTIGSLGIGDVGDNSAFAVD---GRNNAALLAAAETGASASTLYTVNLAT 519
            L AD  D T PFTAL A  SFG+ FNPVPDRLRV +S G NLRIN +    G  +  TDT LT    +    YTN+  G+ +T LY  D+          N A      P  PN GV T++  +G+ ++ D +A + D   G N  AL A    GA+ S+LY +NLAT
Sbjct:  972 LTADAGDLTAPFTAL-AGTSFGVDFNPVPDRLRVVSSAGENLRINVS---SGATI--TDTALTRPPQIAAAAYTNSFAGSTATQLYVFDA----------NSAGLSLQAP--PNDGVLTSVNPVGL-NLTDLTAVSFDIAGGGNGFALAALQADGATQSSLYRINLAT 1120          
BLAST of mRNA_P-wetherbeei_contig54918.1.1 vs. uniprot
Match: A0A7W0VT87_9DELT (DUF4394 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0VT87_9DELT)

HSP 1 Score: 84.0 bits (206), Expect = 1.070e-15
Identity = 63/135 (46.67%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    1 GAASELCPLIADPADATLPFTALPADASFGIGFNPVPDRLRVTTSTGLNLRINTNPNDEGKCLVTTDTELTGA-TSVTGVGYTNAIPGTVSTTLYAIDSGADTFVRIGGNPANGIAGDPGNPNSGVATTIGSLGI 402
            G A+    L AD AD T PFTAL A  +FG+ FNPVPDRLRVTT +G NLRIN    D G    TTD  + GA T  + V YTN+      TTL+AI+   D  V    NP          PN G A T G+LG+
Sbjct:  166 GVATLKSTLAADAADMTAPFTAL-AGTTFGVDFNPVPDRLRVTTDSGQNLRINV---DTGA--TTTDGAINGAATGYSSVAYTNSFAAACRTTLFAINVATDQLVTQ--NP----------PNDGTAVTTGALGV 282          
BLAST of mRNA_P-wetherbeei_contig54918.1.1 vs. uniprot
Match: UPI001F2A54F8 (DUF4394 domain-containing protein n=1 Tax=Flavobacterium sp. WG47 TaxID=2910674 RepID=UPI001F2A54F8)

HSP 1 Score: 83.6 bits (205), Expect = 1.360e-15
Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 1
Query:   85 FGIGFNPVPDRLRVTTSTGLNLRINTNPNDEGKCLVTTDTELT-GATSVTGVGYTNAIPGTVSTTLYAIDSGADTFVRIGGNPANGIAGDPGNPNSGVATTIGSLGIGDVGDNSAFAVDGRNNAALLAAAETGASASTLYTVNLAT 519
            FG  FNPVPDR+R+ ++TG NLR+N  PND    L  TDT L  G  +VT V YTN+ PGT +TTLY IDS  D       NP          PN+G    +G+LG+ DV  ++ F + G +N A       G +   +YT+N +T
Sbjct:  355 FGFDFNPVPDRIRIVSNTGQNLRVN--PNDG--TLAATDTSLNPGTPNVTAVAYTNSFPGTATTTLYDIDSTTDMLYMQ--NP----------PNNGTLVPVGALGV-DVTSSNGFDIGGTSNMAYAILTVGGING--IYTINTST 481          
BLAST of mRNA_P-wetherbeei_contig54918.1.1 vs. uniprot
Match: UPI00198B2B32 (DUF4394 domain-containing protein n=1 Tax=Herminiimonas sp. TaxID=1926289 RepID=UPI00198B2B32)

HSP 1 Score: 82.8 bits (203), Expect = 2.640e-15
Identity = 71/175 (40.57%), Postives = 91/175 (52.00%), Query Frame = 1
Query:    1 GAASELCPLIADPADATLPFTALPADASFGIGFNPVPDRLRVTTSTGLNLRINTNPNDEGKCLVTTDTELTGATS---VTGVGYTNAIPGTVSTTLYAIDSGADTFVRIGGNPANGIAGDPGNPNSGVATTIGSLGIGDVGDNSAFAVDGRNNAALLAAAETGASASTLYTVNLA 516
            GAA+    L  DP D T P+TAL     FG+ FNP+ DRLR+ ++TGLNLR+N    D G    TTD  + G  +   VT   YTN+  GT +TTL+AIDS  DT      NP          PN+G  +   +LG+ D    S F +D R N     A  T  +A   YT+NLA
Sbjct:  109 GAATLKSTLAVDPTDTTSPYTAL-TGTDFGVDFNPLADRLRIVSNTGLNLRVNV---DTGA--TTTDGTINGGAANATVTASAYTNSFAGTGTTTLFAIDSTNDTLFTQ--NP----------PNNGTLSLPVALGV-DASSVSGFDIDPRTNIGY--AVFTVGAARNFYTLNLA 262          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54918.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0003B6061D2.370e-6668.21DUF4394 domain-containing protein n=1 Tax=Nevskia ... [more]
A0A346N437_9GAMM1.230e-3150.62DUF4394 domain-containing protein n=1 Tax=Solimona... [more]
A0A3N0VMG1_9GAMM1.320e-2744.32DUF4394 domain-containing protein n=2 Tax=Sinobact... [more]
A0A4Q6BLU9_9PROT4.290e-2748.85DUF4394 domain-containing protein (Fragment) n=1 T... [more]
A0A2S5TLU2_9GAMM2.710e-2144.44Uncharacterized protein n=1 Tax=Solimonas fluminis... [more]
A0A2G8TG78_9BURK3.040e-1641.24DNA polymerase I n=1 Tax=Massilia eurypsychrophila... [more]
A0A1M5K8S5_9GAMM8.770e-1642.26Calx-beta domain-containing protein n=1 Tax=Hydroc... [more]
A0A7W0VT87_9DELT1.070e-1546.67DUF4394 domain-containing protein n=1 Tax=Deltapro... [more]
UPI001F2A54F81.360e-1541.78DUF4394 domain-containing protein n=1 Tax=Flavobac... [more]
UPI00198B2B322.640e-1540.57DUF4394 domain-containing protein n=1 Tax=Herminii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54918contigP-wetherbeei_contig54918:9..527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1122603.ATVI01000006_gene144
PFAMsDUF4394
Model size519
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.89e-67
EggNOG OGsCOG3386@1|root,COG3386@2|Bacteria,1QV4S@1224|Proteobacteria,1S4YS@1236|Gammaproteobacteria
DescriptionDomain of unknown function (DUF4394)
Cds size519
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.0491652-CDS-P-wetherbeei_contig54918:8..5271683186819.0491652-CDS-P-wetherbeei_contig54918:8..527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54918 9..527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54918.1.1prot_P-wetherbeei_contig54918.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54918 9..527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54918.1.1

>prot_P-wetherbeei_contig54918.1.1 ID=prot_P-wetherbeei_contig54918.1.1|Name=mRNA_P-wetherbeei_contig54918.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
GAASELCPLIADPADATLPFTALPADASFGIGFNPVPDRLRVTTSTGLNL
RINTNPNDEGKCLVTTDTELTGATSVTGVGYTNAIPGTVSTTLYAIDSGA
DTFVRIGGNPANGIAGDPGNPNSGVATTIGSLGIGDVGDNSAFAVDGRNN
AALLAAAETGASASTLYTVNLAT
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mRNA from alignment at P-wetherbeei_contig54918:9..527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54918.1.1 ID=mRNA_P-wetherbeei_contig54918.1.1|Name=mRNA_P-wetherbeei_contig54918.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig54918:9..527+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCGCCAGCGAGCTGTGCCCGCTGATCGCCGACCCGGCCGACGCCAC GCTGCCGTTCACGGCCCTGCCGGCTGACGCCAGCTTCGGCATCGGTTTCA ATCCGGTGCCGGACCGCCTGCGGGTGACCACCAGCACAGGCCTGAACCTG CGCATCAACACCAACCCGAATGACGAGGGCAAGTGTCTGGTGACCACCGA CACGGAGCTGACCGGAGCCACCTCGGTGACCGGCGTCGGCTACACCAACG CCATTCCGGGCACCGTCAGCACCACGCTGTATGCAATCGACAGCGGCGCC GACACCTTCGTCCGCATCGGCGGCAACCCGGCCAACGGCATTGCCGGCGA TCCGGGCAATCCGAACAGCGGCGTGGCGACCACCATCGGCTCGCTGGGCA TCGGCGACGTCGGCGACAACAGCGCCTTCGCGGTCGATGGCCGCAACAAC GCCGCGCTGCTGGCGGCCGCTGAGACCGGCGCCAGCGCCTCGACGCTGTA CACGGTGAACCTCGCCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54918:9..527+

>mRNA_P-wetherbeei_contig54918.1.1 ID=mRNA_P-wetherbeei_contig54918.1.1|Name=mRNA_P-wetherbeei_contig54918.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig54918:9..527+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCGCCAGCGAGCTGTGCCCGCTGATCGCCGACCCGGCCGACGCCAC
GCTGCCGTTCACGGCCCTGCCGGCTGACGCCAGCTTCGGCATCGGTTTCA
ATCCGGTGCCGGACCGCCTGCGGGTGACCACCAGCACAGGCCTGAACCTG
CGCATCAACACCAACCCGAATGACGAGGGCAAGTGTCTGGTGACCACCGA
CACGGAGCTGACCGGAGCCACCTCGGTGACCGGCGTCGGCTACACCAACG
CCATTCCGGGCACCGTCAGCACCACGCTGTATGCAATCGACAGCGGCGCC
GACACCTTCGTCCGCATCGGCGGCAACCCGGCCAACGGCATTGCCGGCGA
TCCGGGCAATCCGAACAGCGGCGTGGCGACCACCATCGGCTCGCTGGGCA
TCGGCGACGTCGGCGACAACAGCGCCTTCGCGGTCGATGGCCGCAACAAC
GCCGCGCTGCTGGCGGCCGCTGAGACCGGCGCCAGCGCCTCGACGCTGTA
CACGGTGAACCTCGCCACC
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