mRNA_P-wetherbeei_contig54736.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54736.1.1
Unique NamemRNA_P-wetherbeei_contig54736.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54736.1.1 vs. uniprot
Match: A0A418UYN6_RHOPL (Uncharacterized protein n=2 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A418UYN6_RHOPL)

HSP 1 Score: 59.7 bits (143), Expect = 8.860e-9
Identity = 45/111 (40.54%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   37 VIALAALLLAGATSYAVAHTKAAVSDAKLQEFADNAALAGVNALAATEGQTDAKRYEVAGAAVRKVIASRSEIVPIISPSIDEMKVSVALTTNNTGRGPAFTATARYVQPG 369
            +IALA L LA   +YA+  T  A     LQ+ AD AA+AGV+ALAA++      R      A R+ I  RS  +  ++PS D M VS+ +    T      TATARY+ PG
Sbjct:    4 LIALAMLPLAAIATYAM--TTRANGHTHLQQIADEAAIAGVHALAASDHXXXXXRQAATSVAARRAIGDRSATIRSVTPSADRMSVSIEIVDPATKAE--ATATARYLPPG 110          
BLAST of mRNA_P-wetherbeei_contig54736.1.1 vs. uniprot
Match: A0A336JNN4_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A336JNN4_9BRAD)

HSP 1 Score: 59.7 bits (143), Expect = 1.060e-8
Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   22 RYRVGVIALAALLLAGATSYAVAHTKAAV--SDAKLQEFADNAALAGVNALAATEGQTDAKRYEVAGAAVRKVIASRSEIVPIISPSIDEMKVSVALTTNNTGRGPAFTATARYVQP 366
            R R+ + A  ALLLA    +   +    +  +D  LQ  AD AALAGV ALAA+   T+ +R  V+ AA ++V+  R   V   +PS D ++VSV +T   T +    +ATARYV P
Sbjct:    5 RSRLRLTAPLALLLAAPVGFGAVYAVPLLGHTDRPLQRLADEAALAGVRALAASAPLTEQRRTAVSTAAAQRVLGDRPAAVTASAPSADTLEVSVEVTDQTTRQR--ASATARYVPP 119          
BLAST of mRNA_P-wetherbeei_contig54736.1.1 vs. uniprot
Match: A0A1Q3KAM2_9BRAD (Uncharacterized protein n=1 Tax=Nitrobacter sp. 62-13 TaxID=1895797 RepID=A0A1Q3KAM2_9BRAD)

HSP 1 Score: 58.9 bits (141), Expect = 2.020e-8
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   37 VIALAALLLAGATSYAVAHTKAAVSDAKLQEFADNAALAGVNALAATEGQTDAKRYEVAGAAVRKVIASRSEIVPIISPSIDEMKVSVALTTNNTGRGPAFTATARYV 360
            ++ LAAL L  A     A +  A +  +LQ+ AD+AALAGVN+LAA   Q        A AA R VIAS+  ++  + PS+D + +SV +   + G+G   +ATARYV
Sbjct:   12 LVLLAALALPFAAGACFALSVHAGTSTRLQDIADDAALAGVNSLAANIDQPADVSSAEAIAAARAVIASQPRVIQRLHPSVDALTMSVVV--EDAGKGMQASATARYV 117          
BLAST of mRNA_P-wetherbeei_contig54736.1.1 vs. uniprot
Match: Q2IVB0_RHOP2 (Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) TaxID=316058 RepID=Q2IVB0_RHOP2)

HSP 1 Score: 56.2 bits (134), Expect = 2.290e-7
Identity = 47/124 (37.90%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   28 RVG-VIALAALLLAGATSYAVAHTKAAVSDAKLQEFADNAALAGVNALAATEGQTDAKRYEVAGAAVRKVIASRSEIVPIISPSIDEMKVSVALTTNNTGRGPAFTATARYVQPGSAISPGQTA 396
            RVG ++AL AL +A    YA      A     LQ+ A+ AA+AGV+ALAA++ +T       +  A R+VI  R  ++  ++PS D++ VSV L    T      TATARYV P + ++P + A
Sbjct:   10 RVGPLVALLALPVAAVAIYA--GMTVAKGHPPLQQIANEAAIAGVHALAASDHRTAEGCAAASTVAARRVIGDRPAMIRAVTPSYDKLTVSVELIDPATNTE--ATATARYVPPSTGLAPQKAA 129          
BLAST of mRNA_P-wetherbeei_contig54736.1.1 vs. uniprot
Match: A0A7W7Z504_9BRAD (Uncharacterized protein n=1 Tax=Rhodopseudomonas rhenobacensis TaxID=87461 RepID=A0A7W7Z504_9BRAD)

HSP 1 Score: 53.9 bits (128), Expect = 1.820e-6
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   40 IALAALLLAGATSYAVAHTKAAVSDAKLQEFADNAALAGVNALAATEGQTDAKRYEVAGAAVRKVIASRSEIVPIISPSIDEMKVSVALTTNNTGRGPAFTATARYVQPGSAISPGQTA 396
            +A A +LLAG    A+A   A    A+LQE A+NAALAGV ALA + G+   +R   + AA +  +A +   +  ++ S +++ +SV L   + G+     ATARYV P    S  Q A
Sbjct:   18 LAAAGVLLAG-VGVAIASRGAGAPQARLQELANNAALAGVTALADSIGKPGEQRIAASVAAAKTSLADQPATLHRVAASAEQLTMSVVLI--DPGKRSEVKATARYVAPSQGRSAQQAA 133          
BLAST of mRNA_P-wetherbeei_contig54736.1.1 vs. uniprot
Match: UPI001EE9A923 (hypothetical protein n=1 Tax=Rhodopseudomonas sp. HC1 TaxID=2897386 RepID=UPI001EE9A923)

HSP 1 Score: 53.5 bits (127), Expect = 2.420e-6
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  121 LQEFADNAALAGVNALAATEGQTDAKRYEVAGAAVRKVIASRSEIVPIISPSIDEMKVSVALTTNNTGRGPAFTATARYVQPG 369
            LQ+ AD AA+AGV+ALAA++  T+A R+     A R+ I  +   +  ++PS D++ VS+ L   +       T+ ARYV PG
Sbjct:   40 LQQIADEAAIAGVHALAASDHSTEAGRHAATTVAARRAIGDQPATIRSVTPSADKLSVSIELV--DPASNAEATSIARYVPPG 120          
BLAST of mRNA_P-wetherbeei_contig54736.1.1 vs. uniprot
Match: Q07M96_RHOP5 (Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) TaxID=316055 RepID=Q07M96_RHOP5)

HSP 1 Score: 53.1 bits (126), Expect = 3.380e-6
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1
Query:   31 VGVIALAALLLAGATSYAVAHTKAAVSDAKLQEFADNAALAGVNALAATEGQTDAKRYEVAGAAVRKVIASRSEIVPIISPSIDEMKVSVAL 306
            VG IA+AAL LA  T+    +       A+LQ+ A++AALAGVNAL  + GQ  A+R   + AA +  +A RS  +  +S S +E+ +SV L
Sbjct:   11 VGGIAMAALTLAIGTALVAVNWSR--PQARLQQIANDAALAGVNALVESVGQPGAERIRTSVAAAQAALADRSGALRSLSGSAEELTLSVVL 100          
BLAST of mRNA_P-wetherbeei_contig54736.1.1 vs. uniprot
Match: A0A1M3CD49_9BRAD (Uncharacterized protein n=1 Tax=Nitrobacter sp. 62-23 TaxID=1895798 RepID=A0A1M3CD49_9BRAD)

HSP 1 Score: 52.4 bits (124), Expect = 4.850e-6
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  109 SDAKLQEFADNAALAGVNALAATEGQTDAKRYEVAGAAVRKVIASRSEIVPIISPSIDEMKVSVALTTNNTGRGPAFTATARYV 360
            ++ +LQ+ AD+AALAGVN+LA    Q    R   A AA   V+A++  IV  + PS++ + +SVA+   + G+G   +ATARYV
Sbjct:   22 TNTRLQDIADDAALAGVNSLATNIDQPADMRLAEAMAAAGTVLATQPGIVRKLRPSVEGLTMSVAV--EDAGKGTRASATARYV 103          
BLAST of mRNA_P-wetherbeei_contig54736.1.1 vs. uniprot
Match: E6VPE3_RHOPX (Uncharacterized protein n=4 Tax=Rhodopseudomonas TaxID=1073 RepID=E6VPE3_RHOPX)

HSP 1 Score: 49.3 bits (116), Expect = 9.470e-5
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  109 SDAKLQEFADNAALAGVNALAATEGQTDAKRYEVAGAAVRKVIASRSEIVPIISPSIDEMKVSVALTTNNTGRGPAFTATARYVQPGS 372
            +D  LQ  AD AAL GV ALAA+   +  +   V+ AA R+V+  R   V    PS DE++VSV +T   T +     ++ARY+ P S
Sbjct:   36 ADPPLQRLADEAALQGVTALAASAAVSQERSTAVSTAAARRVLGDRELTVQASKPSADELEVSVEVTDPATRQR--VRSSARYLPPSS 121          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54736.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A418UYN6_RHOPL8.860e-940.54Uncharacterized protein n=2 Tax=Rhodopseudomonas p... [more]
A0A336JNN4_9BRAD1.060e-839.32Uncharacterized protein n=2 Tax=Bradyrhizobiaceae ... [more]
A0A1Q3KAM2_9BRAD2.020e-840.74Uncharacterized protein n=1 Tax=Nitrobacter sp. 62... [more]
Q2IVB0_RHOP22.290e-737.90Uncharacterized protein n=1 Tax=Rhodopseudomonas p... [more]
A0A7W7Z504_9BRAD1.820e-636.97Uncharacterized protein n=1 Tax=Rhodopseudomonas r... [more]
UPI001EE9A9232.420e-638.55hypothetical protein n=1 Tax=Rhodopseudomonas sp. ... [more]
Q07M96_RHOP53.380e-641.30Uncharacterized protein n=1 Tax=Rhodopseudomonas p... [more]
A0A1M3CD49_9BRAD4.850e-641.67Uncharacterized protein n=1 Tax=Nitrobacter sp. 62... [more]
E6VPE3_RHOPX9.470e-539.77Uncharacterized protein n=4 Tax=Rhodopseudomonas T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54736contigP-wetherbeei_contig54736:4..399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size396
Hectar predicted targeting categorysignal peptide
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186817.233883-CDS-P-wetherbeei_contig54736:3..3991683186817.233883-CDS-P-wetherbeei_contig54736:3..399Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54736 4..399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54736.1.1prot_P-wetherbeei_contig54736.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54736 4..399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54736.1.1

>prot_P-wetherbeei_contig54736.1.1 ID=prot_P-wetherbeei_contig54736.1.1|Name=mRNA_P-wetherbeei_contig54736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
MTGTSLRRYRVGVIALAALLLAGATSYAVAHTKAAVSDAKLQEFADNAAL
AGVNALAATEGQTDAKRYEVAGAAVRKVIASRSEIVPIISPSIDEMKVSV
ALTTNNTGRGPAFTATARYVQPGSAISPGQTA
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mRNA from alignment at P-wetherbeei_contig54736:4..399+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54736.1.1 ID=mRNA_P-wetherbeei_contig54736.1.1|Name=mRNA_P-wetherbeei_contig54736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig54736:4..399+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGGGACGTCGCTTCGCAGATACCGCGTGGGTGTCATCGCTCTGGC AGCGCTGCTGCTTGCGGGCGCAACCAGCTACGCGGTGGCGCACACAAAGG CCGCCGTGTCCGACGCAAAGCTTCAGGAGTTCGCCGACAACGCAGCACTT GCCGGCGTCAACGCGCTGGCTGCGACCGAGGGTCAGACCGACGCGAAAAG GTATGAGGTCGCCGGCGCCGCCGTGCGCAAGGTCATCGCCTCCCGCAGCG AGATCGTGCCGATCATCTCGCCATCGATCGATGAAATGAAAGTGTCGGTC GCACTGACCACCAACAACACCGGCCGCGGCCCGGCATTCACCGCGACCGC GCGCTACGTGCAGCCAGGCTCGGCCATATCGCCGGGACAGACCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54736:4..399+

>mRNA_P-wetherbeei_contig54736.1.1 ID=mRNA_P-wetherbeei_contig54736.1.1|Name=mRNA_P-wetherbeei_contig54736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig54736:4..399+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGGGACGTCGCTTCGCAGATACCGCGTGGGTGTCATCGCTCTGGC
AGCGCTGCTGCTTGCGGGCGCAACCAGCTACGCGGTGGCGCACACAAAGG
CCGCCGTGTCCGACGCAAAGCTTCAGGAGTTCGCCGACAACGCAGCACTT
GCCGGCGTCAACGCGCTGGCTGCGACCGAGGGTCAGACCGACGCGAAAAG
GTATGAGGTCGCCGGCGCCGCCGTGCGCAAGGTCATCGCCTCCCGCAGCG
AGATCGTGCCGATCATCTCGCCATCGATCGATGAAATGAAAGTGTCGGTC
GCACTGACCACCAACAACACCGGCCGCGGCCCGGCATTCACCGCGACCGC
GCGCTACGTGCAGCCAGGCTCGGCCATATCGCCGGGACAGACCGCC
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