mRNA_P-wetherbeei_contig54732.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54732.1.1
Unique NamemRNA_P-wetherbeei_contig54732.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54732.1.1 vs. uniprot
Match: A0A523SPC5_9BACT (Acyl-CoA dehydrogenase (Fragment) n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A523SPC5_9BACT)

HSP 1 Score: 208 bits (529), Expect = 1.170e-64
Identity = 105/173 (60.69%), Postives = 130/173 (75.14%), Query Frame = 1
Query:    1 GKKIAAYALTEAGSGSDAGAMRTTCTLDGDHWVLNGTKNWITNSTAAETFIVYATKDAGLKHKGICCFIVEKGTPGFSIGKHEETMGVRASGTCPLTFDNVRVPKENLLGEEGKGFNIAMATLDSGRVGIGAQAVGIAQAALDNALRYSKERHQFGKAISEFQLVQQMLVRMA 519
            GKKI A+ALTE  +GSDAG++  T  LDGDH++LNGTK +ITN      FIV+A+ +  LKHKGI  FI+E G  GFS GKHE+ MG+RA+  C L F++ +VPKENLLGEEG GF IAM T+D  R+ IGAQAVGI+QAALD +++YSKER QFGK I EF+ +Q ML  MA
Sbjct:    4 GKKIGAFALTEPNAGSDAGSIEATARLDGDHYILNGTKRFITNGGEGGIFIVFASTNKELKHKGISAFIIEDGYEGFSKGKHEDLMGIRATANCELMFEDCKVPKENLLGEEGLGFKIAMGTIDVSRIDIGAQAVGISQAALDESVKYSKERKQFGKPICEFEFIQGMLANMA 176          
BLAST of mRNA_P-wetherbeei_contig54732.1.1 vs. uniprot
Match: A0A7C5ZCT4_9BACT (Acyl-CoA dehydrogenase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C5ZCT4_9BACT)

HSP 1 Score: 207 bits (528), Expect = 4.090e-63
Identity = 105/172 (61.05%), Postives = 129/172 (75.00%), Query Frame = 1
Query:    4 KKIAAYALTEAGSGSDAGAMRTTCTLDGDHWVLNGTKNWITNSTAAETFIVYATKDAGLKHKGICCFIVEKGTPGFSIGKHEETMGVRASGTCPLTFDNVRVPKENLLGEEGKGFNIAMATLDSGRVGIGAQAVGIAQAALDNALRYSKERHQFGKAISEFQLVQQMLVRMA 519
            +KI A+ALTE  +GSD   M TT  LDGDH++LNG+K +ITN   A  FIV+A  D    HKGI  FIVEK  PGF++G+HE+ MG+RA+G C L FD+ RVPKENLLGEEG+GF IAM T+D+ R+ IGAQAVGIAQAALD A++YSKER  FGK I E+Q++Q  L  MA
Sbjct:  118 QKIGAFALTEGSAGSDPAGMETTAKLDGDHYILNGSKRFITNGEEAGIFIVFAVTDREKAHKGISAFIVEKEFPGFAVGQHEDLMGLRATGNCELMFDDCRVPKENLLGEEGQGFKIAMNTIDTSRIDIGAQAVGIAQAALDAAVKYSKERKTFGKPICEYQMIQDKLAEMA 289          
BLAST of mRNA_P-wetherbeei_contig54732.1.1 vs. uniprot
Match: A0A7G6E3T1_9FIRM (Acyl-CoA dehydrogenase n=1 Tax=Thermanaerosceptrum fracticalcis TaxID=1712410 RepID=A0A7G6E3T1_9FIRM)

HSP 1 Score: 207 bits (527), Expect = 5.780e-63
Identity = 106/173 (61.27%), Postives = 133/173 (76.88%), Query Frame = 1
Query:    1 GKKIAAYALTEAGSGSDAGAMRTTCTLDGDHWVLNGTKNWITNSTAAETFIVYATKDAGLKHKGICCFIVEKGTPGFSIGKHEETMGVRASGTCPLTFDNVRVPKENLLGEEGKGFNIAMATLDSGRVGIGAQAVGIAQAALDNALRYSKERHQFGKAISEFQLVQQMLVRMA 519
            G+K+ A+ALTE  +G+DAGAM+T   LDGDH+VLNG K +ITN+ AA++++V+A    G+  KGI  FIVEK  PGFS+G  E+ MG+RAS T  L F+NVRVPKENLLG EG+GF IAM TLD GR+GI +QA+GIAQ ALD A++Y+KER QFGK I+ FQ VQ ML  MA
Sbjct:  117 GEKLGAFALTEPNAGTDAGAMQTKAVLDGDHYVLNGNKMFITNAGAADSYVVFAMTKPGVGTKGISAFIVEKEMPGFSVGHPEDKMGIRASKTAELVFENVRVPKENLLGREGEGFKIAMTTLDGGRIGIASQALGIAQGALDAAIKYAKEREQFGKPIASFQAVQWMLADMA 289          
BLAST of mRNA_P-wetherbeei_contig54732.1.1 vs. uniprot
Match: A0A7V0Z6C8_9BACT (Acyl-CoA dehydrogenase n=1 Tax=candidate division WOR-3 bacterium TaxID=2052148 RepID=A0A7V0Z6C8_9BACT)

HSP 1 Score: 207 bits (527), Expect = 5.930e-63
Identity = 101/173 (58.38%), Postives = 132/173 (76.30%), Query Frame = 1
Query:    1 GKKIAAYALTEAGSGSDAGAMRTTCTLDGDHWVLNGTKNWITNSTAAETFIVYATKDAGLKHKGICCFIVEKGTPGFSIGKHEETMGVRASGTCPLTFDNVRVPKENLLGEEGKGFNIAMATLDSGRVGIGAQAVGIAQAALDNALRYSKERHQFGKAISEFQLVQQMLVRMA 519
            G+KI A  +TE  +GSD   M TT  LDGD+++LNGTK +ITN T A  ++V+A  +  LKHKG+  FIVE+GTPGFS+GKHE+ MG+RASG C L F++ ++PKENLLG+EG+GF I M TLD  RV IGAQAVG++QAAL+ A++YSKER  FG+ I EF+++Q ML  MA
Sbjct:  117 GEKIGAIGITEPNAGSDVAGMETTAKLDGDYYILNGTKRFITNGTEAGIYVVFAYTNKELKHKGMSAFIVERGTPGFSLGKHEDLMGIRASGNCELIFEDCKIPKENLLGKEGEGFKICMNTLDVSRVDIGAQAVGVSQAALEAAIKYSKERKAFGQPICEFEMIQSMLAEMA 289          
BLAST of mRNA_P-wetherbeei_contig54732.1.1 vs. uniprot
Match: A0A7S0V6I4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V6I4_9CRYP)

HSP 1 Score: 205 bits (521), Expect = 7.650e-63
Identity = 99/166 (59.64%), Postives = 127/166 (76.51%), Query Frame = 1
Query:    1 GKKIAAYALTEAGSGSDAGAMRTTCTLDGDHWVLNGTKNWITNSTAAETFIVYATKDAGLKHKGICCFIVEKGTPGFSIGKHEETMGVRASGTCPLTFDNVRVPKENLLGEEGKGFNIAMATLDSGRVGIGAQAVGIAQAALDNALRYSKERHQFGKAISEFQLVQ 498
            G+KI  +AL+E G+GSDAGA      LDGDH+V+NGTKNWITN   A+  +V+AT D   KHKG+  F+V+KGTPGFS GK E+ +G+RASGTC L F+N RVPKENLLG+EG+GF IAM TLD GR+GI AQA+GIAQA+L+ ++ YS++R  F   IS+ Q +Q
Sbjct:  147 GEKIGCFALSEPGNGSDAGAQSCQAVLDGDHYVINGTKNWITNGPQADKAVVFATSDKSKKHKGVSAFLVDKGTPGFSTGKPEDKLGIRASGTCSLIFENCRVPKENLLGQEGEGFKIAMVTLDGGRIGIAAQALGIAQASLEASVEYSQQRVAFDAPISKLQAIQ 312          
BLAST of mRNA_P-wetherbeei_contig54732.1.1 vs. uniprot
Match: A0A1Z5HQB4_9THEO (Butyryl-CoA dehydrogenase n=1 Tax=Calderihabitans maritimus TaxID=1246530 RepID=A0A1Z5HQB4_9THEO)

HSP 1 Score: 206 bits (525), Expect = 1.180e-62
Identity = 105/173 (60.69%), Postives = 131/173 (75.72%), Query Frame = 1
Query:    1 GKKIAAYALTEAGSGSDAGAMRTTCTLDGDHWVLNGTKNWITNSTAAETFIVYATKDAGLKHKGICCFIVEKGTPGFSIGKHEETMGVRASGTCPLTFDNVRVPKENLLGEEGKGFNIAMATLDSGRVGIGAQAVGIAQAALDNALRYSKERHQFGKAISEFQLVQQMLVRMA 519
            G+KI A+ LTE  +GSDA ++RTT  LDG+ WVLNG+K +ITN+  A+ ++V+AT D    H+GI  FIVEKGTPGFS GK E+ +G+RAS T  L F++ R+PKENLLGEEGKGF IA++TLD GR+GI AQAVGIAQ A + AL Y KER QFG+ I EFQ +Q ML  MA
Sbjct:  117 GEKIGAFGLTEPSAGSDAASLRTTAVLDGNEWVLNGSKIFITNAGEADIYVVFATTDRNKGHRGINAFIVEKGTPGFSFGKKEKKLGIRASTTMELVFEDCRIPKENLLGEEGKGFKIALSTLDGGRIGIAAQAVGIAQGAFEAALAYCKEREQFGRPIGEFQALQFMLADMA 289          
BLAST of mRNA_P-wetherbeei_contig54732.1.1 vs. uniprot
Match: A0A0S8GNE2_9BACT (Acyl-CoA dehydrogenase n=1 Tax=candidate division WOR_3 bacterium SM23_60 TaxID=1703780 RepID=A0A0S8GNE2_9BACT)

HSP 1 Score: 206 bits (525), Expect = 1.180e-62
Identity = 103/173 (59.54%), Postives = 127/173 (73.41%), Query Frame = 1
Query:    1 GKKIAAYALTEAGSGSDAGAMRTTCTLDGDHWVLNGTKNWITNSTAAETFIVYATKDAGLKHKGICCFIVEKGTPGFSIGKHEETMGVRASGTCPLTFDNVRVPKENLLGEEGKGFNIAMATLDSGRVGIGAQAVGIAQAALDNALRYSKERHQFGKAISEFQLVQQMLVRMA 519
            GKKI A+ LTE  +GSD  A+ TT  LDGDH++LNGTK +ITN+  A  FIV+A  +  LKHKGI  F+VE+ TPGFS GKHE+ MG+RA+  C L F++ ++PKEN+LGEE  GF I M TLD  R+ IGAQAVGIAQ ALD AL+YSKER  FG+ I  F++VQ ML  MA
Sbjct:  117 GKKIGAFGLTEPNAGSDVAAIETTARLDGDHYILNGTKRFITNAGEAGVFIVFAYTNKELKHKGISAFVVERDTPGFSFGKHEDLMGIRATANCELIFEDAKIPKENILGEENAGFKICMNTLDVSRIDIGAQAVGIAQGALDEALKYSKERRAFGQPICNFEMVQSMLAEMA 289          
BLAST of mRNA_P-wetherbeei_contig54732.1.1 vs. uniprot
Match: A0A7C5DGY6_9BACT (Acyl-CoA dehydrogenase n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A7C5DGY6_9BACT)

HSP 1 Score: 206 bits (524), Expect = 1.670e-62
Identity = 104/173 (60.12%), Postives = 129/173 (74.57%), Query Frame = 1
Query:    1 GKKIAAYALTEAGSGSDAGAMRTTCTLDGDHWVLNGTKNWITNSTAAETFIVYATKDAGLKHKGICCFIVEKGTPGFSIGKHEETMGVRASGTCPLTFDNVRVPKENLLGEEGKGFNIAMATLDSGRVGIGAQAVGIAQAALDNALRYSKERHQFGKAISEFQLVQQMLVRMA 519
            G+KI A  +TE  +GSD  AM +T  LDGDH++LNG K +ITN TAA  F+V+A  D  LKHKGI  FIV++ TPGFS+GKHE  MG+RA+G C L F++ R+PKENLLGE GKGF I M TLD  R+ IGAQAVGI+QAALD+A++YSKER  FGK I +  ++Q ML  MA
Sbjct:  117 GEKIGAIGITEPNAGSDVAAMESTAVLDGDHYILNGAKRFITNGTAAGIFVVFAYTDKNLKHKGISAFIVDRDTPGFSLGKHENLMGIRATGNCELIFEDCRIPKENLLGEIGKGFFICMNTLDVSRIDIGAQAVGISQAALDDAVQYSKERKTFGKPICKQGMIQNMLAEMA 289          
BLAST of mRNA_P-wetherbeei_contig54732.1.1 vs. uniprot
Match: A0A3S0FD98_9BACT (Acyl-CoA dehydrogenase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A3S0FD98_9BACT)

HSP 1 Score: 206 bits (524), Expect = 2.290e-62
Identity = 99/172 (57.56%), Postives = 129/172 (75.00%), Query Frame = 1
Query:    1 GKKIAAYALTEAGSGSDAGAMRTTCTLDGDHWVLNGTKNWITNSTAAETFIVYATKDAGLKHKGICCFIVEKGTPGFSIGKHEETMGVRASGTCPLTFDNVRVPKENLLGEEGKGFNIAMATLDSGRVGIGAQAVGIAQAALDNALRYSKERHQFGKAISEFQLVQQMLVRM 516
            GKK+ A+AL+E GSGSDA A R T  LDGDH++LNG+KNWITN   A+ ++V A  DA LKHKG+   +VEKGTPGF+ GK E+ +G++ S TC + F++ RVP  N+LG  G+GF +AM+TLD GR+GI +QAVGIAQ A D+A +YSKER  FGK I++FQ +Q ML  M
Sbjct:  128 GKKLGAFALSEPGSGSDAAAARCTAVLDGDHFILNGSKNWITNGVEADYYLVIAQTDASLKHKGLVAIVVEKGTPGFTFGKLEDKLGIKGSSTCQIMFEDARVPAANMLGSIGEGFKVAMSTLDGGRIGIASQAVGIAQGAWDHAFKYSKERVAFGKTINQFQAIQFMLAEM 299          
BLAST of mRNA_P-wetherbeei_contig54732.1.1 vs. uniprot
Match: UPI001E50A360 (acyl-CoA dehydrogenase n=3 Tax=Brevibacillus TaxID=55080 RepID=UPI001E50A360)

HSP 1 Score: 206 bits (523), Expect = 2.370e-62
Identity = 105/173 (60.69%), Postives = 130/173 (75.14%), Query Frame = 1
Query:    1 GKKIAAYALTEAGSGSDAGAMRTTCTLDGDHWVLNGTKNWITNSTAAETFIVYATKDAGLKHKGICCFIVEKGTPGFSIGKHEETMGVRASGTCPLTFDNVRVPKENLLGEEGKGFNIAMATLDSGRVGIGAQAVGIAQAALDNALRYSKERHQFGKAISEFQLVQQMLVRMA 519
            G+K+ AY LTE GSGSDA  MRTT   DGD ++LNG+K +ITN   AE +IV+A  D  LKHKGI  FIVEKGTPGFS+GK E+ +G+R+S T  + F+N R+P +NLLGEEG+GF IAM TLD GR GI AQA+GIAQ ALD+A+ Y++ERHQFGK I+  Q +Q  L  MA
Sbjct:  117 GRKMGAYCLTEPGSGSDAAGMRTTAVKDGDDYILNGSKIFITNGGEAEIYIVFAITDPSLKHKGISAFIVEKGTPGFSMGKKEKKLGIRSSPTLEVIFENARIPAKNLLGEEGQGFKIAMMTLDGGRNGIAAQALGIAQGALDHAVAYARERHQFGKPIASLQAIQFKLADMA 289          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54732.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523SPC5_9BACT1.170e-6460.69Acyl-CoA dehydrogenase (Fragment) n=1 Tax=Candidat... [more]
A0A7C5ZCT4_9BACT4.090e-6361.05Acyl-CoA dehydrogenase n=1 Tax=bacterium TaxID=186... [more]
A0A7G6E3T1_9FIRM5.780e-6361.27Acyl-CoA dehydrogenase n=1 Tax=Thermanaerosceptrum... [more]
A0A7V0Z6C8_9BACT5.930e-6358.38Acyl-CoA dehydrogenase n=1 Tax=candidate division ... [more]
A0A7S0V6I4_9CRYP7.650e-6359.64Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1Z5HQB4_9THEO1.180e-6260.69Butyryl-CoA dehydrogenase n=1 Tax=Calderihabitans ... [more]
A0A0S8GNE2_9BACT1.180e-6259.54Acyl-CoA dehydrogenase n=1 Tax=candidate division ... [more]
A0A7C5DGY6_9BACT1.670e-6260.12Acyl-CoA dehydrogenase n=1 Tax=Candidatus Cloacimo... [more]
A0A3S0FD98_9BACT2.290e-6257.56Acyl-CoA dehydrogenase n=1 Tax=Candidatus Melainab... [more]
UPI001E50A3602.370e-6260.69acyl-CoA dehydrogenase n=3 Tax=Brevibacillus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54732contigP-wetherbeei_contig54732:6..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1449126.JQKL01000002_gene1589
PFAMsAcyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
Model size519
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.47e-64
EggNOG OGsCOG1960@1|root,COG1960@2|Bacteria,1TP57@1239|Firmicutes,247UB@186801|Clostridia
Descriptionacyl-CoA dehydrogenase
Cds size519
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186817.1429188-CDS-P-wetherbeei_contig54732:5..5241683186817.1429188-CDS-P-wetherbeei_contig54732:5..524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54732 6..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54732.1.1prot_P-wetherbeei_contig54732.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54732 6..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54732.1.1

>prot_P-wetherbeei_contig54732.1.1 ID=prot_P-wetherbeei_contig54732.1.1|Name=mRNA_P-wetherbeei_contig54732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
GKKIAAYALTEAGSGSDAGAMRTTCTLDGDHWVLNGTKNWITNSTAAETF
IVYATKDAGLKHKGICCFIVEKGTPGFSIGKHEETMGVRASGTCPLTFDN
VRVPKENLLGEEGKGFNIAMATLDSGRVGIGAQAVGIAQAALDNALRYSK
ERHQFGKAISEFQLVQQMLVRMA
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mRNA from alignment at P-wetherbeei_contig54732:6..524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54732.1.1 ID=mRNA_P-wetherbeei_contig54732.1.1|Name=mRNA_P-wetherbeei_contig54732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig54732:6..524+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGAAGATCGCCGCTTACGCTCTGACCGAGGCCGGTTCGGGCTCGGA TGCCGGCGCGATGCGCACCACCTGCACGCTCGACGGCGACCACTGGGTGC TCAACGGCACCAAGAACTGGATCACCAACTCGACGGCTGCCGAGACCTTC ATCGTCTACGCAACCAAGGATGCCGGCCTCAAGCACAAGGGCATCTGCTG CTTCATCGTCGAGAAGGGCACGCCAGGCTTCAGCATCGGCAAGCACGAGG AGACGATGGGCGTGCGCGCTTCGGGCACCTGCCCGCTGACGTTTGACAAT GTCCGCGTCCCCAAAGAAAATCTGCTCGGCGAAGAGGGCAAAGGCTTCAA CATCGCCATGGCCACTCTCGACTCCGGCCGCGTCGGCATCGGCGCCCAGG CCGTTGGCATCGCTCAGGCCGCTCTCGATAACGCGCTGCGCTACTCCAAG GAGCGCCACCAGTTCGGTAAGGCCATCTCCGAGTTCCAACTGGTTCAGCA GATGCTCGTCCGTATGGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54732:6..524+

>mRNA_P-wetherbeei_contig54732.1.1 ID=mRNA_P-wetherbeei_contig54732.1.1|Name=mRNA_P-wetherbeei_contig54732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig54732:6..524+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGAAGATCGCCGCTTACGCTCTGACCGAGGCCGGTTCGGGCTCGGA
TGCCGGCGCGATGCGCACCACCTGCACGCTCGACGGCGACCACTGGGTGC
TCAACGGCACCAAGAACTGGATCACCAACTCGACGGCTGCCGAGACCTTC
ATCGTCTACGCAACCAAGGATGCCGGCCTCAAGCACAAGGGCATCTGCTG
CTTCATCGTCGAGAAGGGCACGCCAGGCTTCAGCATCGGCAAGCACGAGG
AGACGATGGGCGTGCGCGCTTCGGGCACCTGCCCGCTGACGTTTGACAAT
GTCCGCGTCCCCAAAGAAAATCTGCTCGGCGAAGAGGGCAAAGGCTTCAA
CATCGCCATGGCCACTCTCGACTCCGGCCGCGTCGGCATCGGCGCCCAGG
CCGTTGGCATCGCTCAGGCCGCTCTCGATAACGCGCTGCGCTACTCCAAG
GAGCGCCACCAGTTCGGTAAGGCCATCTCCGAGTTCCAACTGGTTCAGCA
GATGCTCGTCCGTATGGCT
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