mRNA_P-wetherbeei_contig54519.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54519.1.1
Unique NamemRNA_P-wetherbeei_contig54519.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54519.1.1 vs. uniprot
Match: A0A495KZZ4_9ACTN (Acetyl esterase/lipase n=1 Tax=Nocardiopsis sp. Huas11 TaxID=2183912 RepID=A0A495KZZ4_9ACTN)

HSP 1 Score: 237 bits (604), Expect = 2.080e-75
Identity = 110/175 (62.86%), Postives = 128/175 (73.14%), Query Frame = 1
Query:    1 MTVVSVDYRLAPEHPFPLPSDDCLAAWHWLQNSAASLGIDPARVAIGGASAGGGLAAGLAQRIHDTGGIQPIAQWLMAPMLDDRTAACRELDDIKHPVWTNRMNRAAWRSYLDREPGAEDLPAYAAPGRRGDLTGLPPTFIGVGDIDLFYEEGRRYADGLRQHGVAVAFETIRGA 525
            + VVSV+YRLAPEHPFP+P DDCL  W WL + A   G+DP R+A+GG SAGGGLAAGL QR+HD  G++PI QWL  PMLDDRTAA RELD + H +W NR NR AW +YL   PGA D P YA P RR DL GLPPT+IG+GDI+LFYEEGR YA+ L   GV    E + GA
Sbjct:  103 LVVVSVEYRLAPEHPFPVPLDDCLRLWRWLLDHADERGVDPLRIAVGGQSAGGGLAAGLVQRLHDLDGVRPIVQWLHCPMLDDRTAARRELDAVDHFLWNNRSNRIAWSAYLGTGPGAPDAPPYAVPARRTDLAGLPPTWIGLGDIELFYEEGRAYAEALTDAGVDTMVEVVPGA 277          
BLAST of mRNA_P-wetherbeei_contig54519.1.1 vs. uniprot
Match: UPI001F405117 (alpha/beta hydrolase n=1 Tax=Antribacter sp. KLBMP9083 TaxID=2910976 RepID=UPI001F405117)

HSP 1 Score: 237 bits (604), Expect = 2.350e-75
Identity = 110/175 (62.86%), Postives = 131/175 (74.86%), Query Frame = 1
Query:    1 MTVVSVDYRLAPEHPFPLPSDDCLAAWHWLQNSAASLGIDPARVAIGGASAGGGLAAGLAQRIHDTGGIQPIAQWLMAPMLDDRTAACRELDDIKHPVWTNRMNRAAWRSYLDREPGAEDLPAYAAPGRRGDLTGLPPTFIGVGDIDLFYEEGRRYADGLRQHGVAVAFETIRGA 525
            + VVSV+YR +PEHPFPLP DDCLA W W Q  AA LG+DPARV +GG SAGGGLAAGL QR+HD GG QP+AQ LM PMLDDRTAA RELD + H VW+NR NRA W +YL +EPG  ++P +A P RR DL GLPP ++ VGDIDLF++E  RYA+ LR  GV    + + GA
Sbjct:  106 LVVVSVEYRRSPEHPFPLPLDDCLAGWTWFQEHAAELGVDPARVVVGGQSAGGGLAAGLVQRLHDAGGTQPVAQLLMCPMLDDRTAARRELDAVGHWVWSNRKNRAGWAAYLGQEPGLGEVPPHAVPARRDDLAGLPPAYVAVGDIDLFHDEDVRYAERLRAAGVPCDLDVVPGA 280          
BLAST of mRNA_P-wetherbeei_contig54519.1.1 vs. uniprot
Match: D7B0N8_NOCDD (Alpha/beta hydrolase fold-3 domain protein n=10 Tax=Nocardiopsis TaxID=2013 RepID=D7B0N8_NOCDD)

HSP 1 Score: 236 bits (602), Expect = 4.300e-75
Identity = 110/175 (62.86%), Postives = 130/175 (74.29%), Query Frame = 1
Query:    1 MTVVSVDYRLAPEHPFPLPSDDCLAAWHWLQNSAASLGIDPARVAIGGASAGGGLAAGLAQRIHDTGGIQPIAQWLMAPMLDDRTAACRELDDIKHPVWTNRMNRAAWRSYLDREPGAEDLPAYAAPGRRGDLTGLPPTFIGVGDIDLFYEEGRRYADGLRQHGVAVAFETIRGA 525
            +TVVS +YR+APE P+P   DDC AAW WLQ++AASLG+DPARVAIGG SAGGGL A L QR+HD GG QP+ QWL+ PMLDDRTAA R+LD ++H +W N +NR  WRSYL  +PGA  +P YA P RR DL+GLPP +IGVGDIDLF+ E R YA  LR  GV   F    GA
Sbjct:  101 ITVVSAEYRMAPEDPYPAALDDCHAAWTWLQDNAASLGVDPARVAIGGQSAGGGLTASLVQRLHDEGGTQPVGQWLLCPMLDDRTAARRDLDRVRHRIWNNEVNRFGWRSYLGTDPGAATVPRYAVPARREDLSGLPPAWIGVGDIDLFHNESREYAHRLRDAGVDTTFHLEPGA 275          
BLAST of mRNA_P-wetherbeei_contig54519.1.1 vs. uniprot
Match: A0A1V3C233_9ACTN (Esterase n=2 Tax=Nocardiopsis sinuspersici TaxID=501010 RepID=A0A1V3C233_9ACTN)

HSP 1 Score: 236 bits (603), Expect = 6.460e-75
Identity = 108/175 (61.71%), Postives = 135/175 (77.14%), Query Frame = 1
Query:    1 MTVVSVDYRLAPEHPFPLPSDDCLAAWHWLQNSAASLGIDPARVAIGGASAGGGLAAGLAQRIHDTGGIQPIAQWLMAPMLDDRTAACRELDDIKHPVWTNRMNRAAWRSYLDREPGAEDLPAYAAPGRRGDLTGLPPTFIGVGDIDLFYEEGRRYADGLRQHGVAVAFETIRGA 525
            +TVVS +YRLAPEHP+P+  +DC AAW WL+ +A SLG+DP+RVA+GG SAGGGLAA L QR+HD GG +P+AQWL++PMLDDRTAA R+LD + H +W N+ NR  WRSYL   PG+  +P YA P RR DL+GLPP +IGVGDIDLF+EE R Y   LR+ GV  AF ++ GA
Sbjct:  101 VTVVSAEYRLAPEHPYPVALNDCHAAWTWLRENAGSLGVDPSRVAVGGQSAGGGLAAALVQRLHDEGGTRPVAQWLLSPMLDDRTAARRDLDKVGHYMWNNKANRFGWRSYLATAPGSSAVPRYAVPARREDLSGLPPAWIGVGDIDLFHEESREYGRRLREAGVDAAFHSVPGA 275          
BLAST of mRNA_P-wetherbeei_contig54519.1.1 vs. uniprot
Match: A0A166T9H5_9ACTN (Esterase/lipase n=1 Tax=Frankia sp. EI5c TaxID=683316 RepID=A0A166T9H5_9ACTN)

HSP 1 Score: 236 bits (601), Expect = 7.550e-75
Identity = 112/175 (64.00%), Postives = 129/175 (73.71%), Query Frame = 1
Query:    1 MTVVSVDYRLAPEHPFPLPSDDCLAAWHWLQNSAASLGIDPARVAIGGASAGGGLAAGLAQRIHDTGGIQPIAQWLMAPMLDDRTAACRELDDIKHPVWTNRMNRAAWRSYLDREPGAEDLPAYAAPGRRGDLTGLPPTFIGVGDIDLFYEEGRRYADGLRQHGVAVAFETIRGA 525
            +TVVSVDYRLAPE PFP   DDC A W W+Q  A SLG+DP RVA+GG SAGGGLAA L QR+ D GG  P AQWL +PMLDDRTAA  ELD ++HPVWTN +NR  WRSYL  EPGA ++P YA P RR +L GLPP +IGVGD+DLFY+E R YA  L + GVA  F  + GA
Sbjct:  101 ITVVSVDYRLAPECPFPAALDDCQAGWEWVQQYADSLGVDPTRVAVGGQSAGGGLAASLVQRLCDAGGPAPAAQWLHSPMLDDRTAARPELDAVRHPVWTNGLNRFGWRSYLGAEPGAAEVPPYAVPARRAELRGLPPAWIGVGDVDLFYDENREYARRLGEAGVATMFHPVAGA 275          
BLAST of mRNA_P-wetherbeei_contig54519.1.1 vs. uniprot
Match: A0A7Z0ENC1_9ACTN (Acetyl esterase/lipase n=1 Tax=Nocardiopsis aegyptia TaxID=220378 RepID=A0A7Z0ENC1_9ACTN)

HSP 1 Score: 234 bits (598), Expect = 1.680e-74
Identity = 109/175 (62.29%), Postives = 126/175 (72.00%), Query Frame = 1
Query:    1 MTVVSVDYRLAPEHPFPLPSDDCLAAWHWLQNSAASLGIDPARVAIGGASAGGGLAAGLAQRIHDTGGIQPIAQWLMAPMLDDRTAACRELDDIKHPVWTNRMNRAAWRSYLDREPGAEDLPAYAAPGRRGDLTGLPPTFIGVGDIDLFYEEGRRYADGLRQHGVAVAFETIRGA 525
            + VVSV+YRLAPEHPFP+P DDC   W WL + AA  G DP R+A+GG SAGGGLAAGL QRIHD  G+QP+AQWL  PMLDDRTAA RELD + H +W NR NR  W +YL  EPG   +P YAAPGRR DL G+PPT+IG GDI+LFYEE R YA+ L   GV      + GA
Sbjct:  103 IVVVSVEYRLAPEHPFPVPLDDCFRVWSWLLDHAAERGADPHRIAVGGQSAGGGLAAGLVQRIHDHSGVQPVAQWLFCPMLDDRTAARRELDAVDHFLWNNRSNRVGWSAYLGTEPGTPHMPPYAAPGRRTDLDGMPPTWIGTGDIELFYEEDRAYAEALTGAGVDTTLLVVPGA 277          
BLAST of mRNA_P-wetherbeei_contig54519.1.1 vs. uniprot
Match: A0A1Q4X092_9ACTN (Esterase n=1 Tax=Nocardiopsis sp. TSRI0078 TaxID=1718951 RepID=A0A1Q4X092_9ACTN)

HSP 1 Score: 234 bits (598), Expect = 1.740e-74
Identity = 110/175 (62.86%), Postives = 131/175 (74.86%), Query Frame = 1
Query:    1 MTVVSVDYRLAPEHPFPLPSDDCLAAWHWLQNSAASLGIDPARVAIGGASAGGGLAAGLAQRIHDTGGIQPIAQWLMAPMLDDRTAACRELDDIKHPVWTNRMNRAAWRSYLDREPGAEDLPAYAAPGRRGDLTGLPPTFIGVGDIDLFYEEGRRYADGLRQHGVAVAFETIRGA 525
            +TVVS +YRLAPEHP+P   DDC AAW W + +A SLG+DP+RVA+GG SAGGGLAA LAQR HD GG QP+AQWL +P LDDRTAA R+LD ++H +W NR +R  WRSYL  EPG+  LP YA P RR DL+GLPP +IGVGDIDLF++E R YA  L   GV  AF  + GA
Sbjct:  101 VTVVSAEYRLAPEHPYPAALDDCHAAWTWSRENAVSLGVDPSRVAVGGQSAGGGLAAALAQRPHDEGGTQPLAQWLFSPTLDDRTAARRDLDGVRHYMWNNRADRFGWRSYLAAEPGSSTLPRYAVPARREDLSGLPPAWIGVGDIDLFHDESREYARRLGDAGVGTAFHPVPGA 275          
BLAST of mRNA_P-wetherbeei_contig54519.1.1 vs. uniprot
Match: A0A316EKZ1_9ACTN (Acetyl esterase/lipase n=2 Tax=Actinoplanes xinjiangensis TaxID=512350 RepID=A0A316EKZ1_9ACTN)

HSP 1 Score: 233 bits (593), Expect = 9.050e-74
Identity = 112/178 (62.92%), Postives = 130/178 (73.03%), Query Frame = 1
Query:    1 MTVVSVDYRLAPEHPFPLPSDDCLAAWHWLQNSAASLGIDPARVAIGGASAGGGLAAGLAQRIHDTGGIQPIAQWLMAPMLDDRTAACRELDDIKHPVWTNRMNRAAWRSYLDREPGA---EDLPAYAAPGRRGDLTGLPPTFIGVGDIDLFYEEGRRYADGLRQHGVAVAFETIRGA 525
            + VV+ DYRLAPE PFP P DDC  AW WL  +AA LG+DP RV +GG SAGGGLAA LAQR+HD  G+QPIAQWL  PMLDDRTAA R+LD+I H VW NR NR  W +YL  EPGA   E+ PA+A P RR DLTGLPP +IGVGD+DLF++E R YA+ LR  GV   F  + GA
Sbjct:  101 IVVVAADYRLAPEFPFPTPLDDCHRAWTWLLRNAARLGVDPGRVIVGGQSAGGGLAAALAQRLHDEDGVQPIAQWLFCPMLDDRTAARRDLDEIGHRVWNNRHNRYGWGAYLGSEPGATGTEEPPAHAVPARRDDLTGLPPAWIGVGDVDLFHDEDRAYAERLRAAGVPATFHAVPGA 278          
BLAST of mRNA_P-wetherbeei_contig54519.1.1 vs. uniprot
Match: UPI001FA7413F (alpha/beta hydrolase n=1 Tax=Georgenia sp. TF02-10 TaxID=2917725 RepID=UPI001FA7413F)

HSP 1 Score: 232 bits (592), Expect = 1.840e-73
Identity = 110/175 (62.86%), Postives = 125/175 (71.43%), Query Frame = 1
Query:    1 MTVVSVDYRLAPEHPFPLPSDDCLAAWHWLQNSAASLGIDPARVAIGGASAGGGLAAGLAQRIHDTGGIQPIAQWLMAPMLDDRTAACRELDDIKHPVWTNRMNRAAWRSYLDREPGAEDLPAYAAPGRRGDLTGLPPTFIGVGDIDLFYEEGRRYADGLRQHGVAVAFETIRGA 525
            +TVVS DYRLAPEHPFP P DDC   W WL   AA  GIDPARVA+GG SAGGGLAAGL QR+HD GG QP AQWL  PMLDDRTAA RELD ++H VW N  N A WR+YL +EPG + +  YAAP RR DL+GLPP +IG GDI+LF+ E R YA  L   GV    + + GA
Sbjct:  108 ITVVSADYRLAPEHPFPAPLDDCHTVWRWLVAHAAERGIDPARVAVGGQSAGGGLAAGLVQRLHDEGGPQPAAQWLFCPMLDDRTAANRELDAVRHFVWNNSSNHAGWRAYLGQEPGGDGVAPYAAPARRADLSGLPPAWIGTGDIELFFAEDRDYAQALTAAGVDCTLDVVPGA 282          
BLAST of mRNA_P-wetherbeei_contig54519.1.1 vs. uniprot
Match: UPI001F3791EA (alpha/beta hydrolase n=1 Tax=Sphingobium sufflavum TaxID=1129547 RepID=UPI001F3791EA)

HSP 1 Score: 232 bits (591), Expect = 2.610e-73
Identity = 111/175 (63.43%), Postives = 129/175 (73.71%), Query Frame = 1
Query:    1 MTVVSVDYRLAPEHPFPLPSDDCLAAWHWLQNSAASLGIDPARVAIGGASAGGGLAAGLAQRIHDTGGIQPIAQWLMAPMLDDRTAACRELDDIKHPVWTNRMNRAAWRSYLDREPGAEDLPAYAAPGRRGDLTGLPPTFIGVGDIDLFYEEGRRYADGLRQHGVAVAFETIRGA 525
            + VVSVDYRLAPEHPFP P  DC +AW W+Q  A +LGIDPAR+AIGG SAGGGLAA L Q++HD GG QP+AQWL  PM+DDRTAA  +LD I H +W+NR NR  W +YL REPGA D P YAA  RR DL GLPP +IGVG +DLF EE R +AD LR+  V V F  + GA
Sbjct:   70 LVVVSVDYRLAPEHPFPAPLVDCHSAWTWMQAQAVALGIDPARIAIGGQSAGGGLAAALVQQVHDEGGPQPVAQWLFCPMIDDRTAARIDLDQIGHRLWSNRNNRTGWEAYLGREPGAVDPPPYAAAARRTDLAGLPPAWIGVGTVDLFCEEDRVFADRLREADVDVTFRLVDGA 244          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54519.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A495KZZ4_9ACTN2.080e-7562.86Acetyl esterase/lipase n=1 Tax=Nocardiopsis sp. Hu... [more]
UPI001F4051172.350e-7562.86alpha/beta hydrolase n=1 Tax=Antribacter sp. KLBMP... [more]
D7B0N8_NOCDD4.300e-7562.86Alpha/beta hydrolase fold-3 domain protein n=10 Ta... [more]
A0A1V3C233_9ACTN6.460e-7561.71Esterase n=2 Tax=Nocardiopsis sinuspersici TaxID=5... [more]
A0A166T9H5_9ACTN7.550e-7564.00Esterase/lipase n=1 Tax=Frankia sp. EI5c TaxID=683... [more]
A0A7Z0ENC1_9ACTN1.680e-7462.29Acetyl esterase/lipase n=1 Tax=Nocardiopsis aegypt... [more]
A0A1Q4X092_9ACTN1.740e-7462.86Esterase n=1 Tax=Nocardiopsis sp. TSRI0078 TaxID=1... [more]
A0A316EKZ1_9ACTN9.050e-7462.92Acetyl esterase/lipase n=2 Tax=Actinoplanes xinjia... [more]
UPI001FA7413F1.840e-7362.86alpha/beta hydrolase n=1 Tax=Georgenia sp. TF02-10... [more]
UPI001F3791EA2.610e-7363.43alpha/beta hydrolase n=1 Tax=Sphingobium sufflavum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54519contigP-wetherbeei_contig54519:3..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog446468.Ndas_1001
Preferred namelipW
PFAMsAbhydrolase_3
Model size525
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.06e-76
EggNOG OGsCOG0657@1|root,COG0657@2|Bacteria,2GJYR@201174|Actinobacteria,4EHRV@85012|Streptosporangiales
DescriptionCarboxylesterase family
Cds size525
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.7550263-CDS-P-wetherbeei_contig54519:2..5271683186814.7550263-CDS-P-wetherbeei_contig54519:2..527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54519 3..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54519.1.1prot_P-wetherbeei_contig54519.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54519 3..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54519.1.1

>prot_P-wetherbeei_contig54519.1.1 ID=prot_P-wetherbeei_contig54519.1.1|Name=mRNA_P-wetherbeei_contig54519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
MTVVSVDYRLAPEHPFPLPSDDCLAAWHWLQNSAASLGIDPARVAIGGAS
AGGGLAAGLAQRIHDTGGIQPIAQWLMAPMLDDRTAACRELDDIKHPVWT
NRMNRAAWRSYLDREPGAEDLPAYAAPGRRGDLTGLPPTFIGVGDIDLFY
EEGRRYADGLRQHGVAVAFETIRGA
back to top

mRNA from alignment at P-wetherbeei_contig54519:3..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54519.1.1 ID=mRNA_P-wetherbeei_contig54519.1.1|Name=mRNA_P-wetherbeei_contig54519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig54519:3..527- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGTCGTCTCGGTCGACTACCGGCTTGCGCCGGAGCACCCCTTTCC TCTTCCATCCGACGACTGTCTCGCCGCCTGGCACTGGTTGCAGAACTCCG CTGCTTCGCTCGGCATCGATCCCGCACGCGTGGCGATCGGCGGCGCGAGC GCGGGCGGTGGCCTTGCGGCGGGCCTTGCCCAGCGCATCCACGACACCGG CGGCATTCAGCCCATTGCCCAATGGCTGATGGCGCCCATGCTCGATGATC GCACCGCCGCGTGCCGCGAGCTCGACGACATCAAGCATCCCGTCTGGACC AATCGCATGAACCGGGCCGCGTGGCGGTCCTATCTCGACCGGGAGCCGGG CGCCGAGGATCTGCCCGCCTACGCAGCACCTGGCAGGCGAGGTGACCTGA CCGGCCTGCCGCCCACATTCATCGGCGTGGGCGACATCGACCTCTTCTAT GAGGAGGGCCGGCGCTATGCCGACGGCCTGAGGCAACATGGTGTCGCCGT TGCGTTCGAAACCATTCGCGGCGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig54519:3..527-

>mRNA_P-wetherbeei_contig54519.1.1 ID=mRNA_P-wetherbeei_contig54519.1.1|Name=mRNA_P-wetherbeei_contig54519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig54519:3..527- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGTCGTCTCGGTCGACTACCGGCTTGCGCCGGAGCACCCCTTTCC
TCTTCCATCCGACGACTGTCTCGCCGCCTGGCACTGGTTGCAGAACTCCG
CTGCTTCGCTCGGCATCGATCCCGCACGCGTGGCGATCGGCGGCGCGAGC
GCGGGCGGTGGCCTTGCGGCGGGCCTTGCCCAGCGCATCCACGACACCGG
CGGCATTCAGCCCATTGCCCAATGGCTGATGGCGCCCATGCTCGATGATC
GCACCGCCGCGTGCCGCGAGCTCGACGACATCAAGCATCCCGTCTGGACC
AATCGCATGAACCGGGCCGCGTGGCGGTCCTATCTCGACCGGGAGCCGGG
CGCCGAGGATCTGCCCGCCTACGCAGCACCTGGCAGGCGAGGTGACCTGA
CCGGCCTGCCGCCCACATTCATCGGCGTGGGCGACATCGACCTCTTCTAT
GAGGAGGGCCGGCGCTATGCCGACGGCCTGAGGCAACATGGTGTCGCCGT
TGCGTTCGAAACCATTCGCGGCGCC
back to top