mRNA_P-wetherbeei_contig54446.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54446.1.1
Unique NamemRNA_P-wetherbeei_contig54446.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54446.1.1 vs. uniprot
Match: A0A7Y5PHJ1_9BURK (Uncharacterized protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A7Y5PHJ1_9BURK)

HSP 1 Score: 100 bits (250), Expect = 7.550e-25
Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:   34 AAAALAGLFLLAVVMFVAMLAGVEPHPPGTRGPYLGAVAALALISIWLLLVHEPLGTWAGLLTALAFVPSVGPHKLWTEPAAQALAPLIVVGSLCAVVALVTLGR 348
            AAAAL  L +L + MF +MLAGVEPHPPG RGPY+ A AALA  ++W+L+           LTALAF+P VGPHK +TE AA  LAP+IVVG+   V  LV   R
Sbjct:   17 AAAALTILIVLDLGMFASMLAGVEPHPPGARGPYIAATAALATATLWMLMATRGDAVPLLALTALAFIPGVGPHKFFTEAAAPDLAPVIVVGTGAIVTLLVVAAR 121
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BLAST of mRNA_P-wetherbeei_contig54446.1.1 vs. uniprot
Match: UPI0015635881 (hypothetical protein n=1 Tax=Aquabacterium terrae TaxID=2732868 RepID=UPI0015635881)

HSP 1 Score: 85.9 bits (211), Expect = 2.920e-19
Identity = 48/97 (49.48%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:   31 LAAAALAGLFLLAVVMFVAMLAGVEPHPPGTRGPYLGAVAALALISIWLLLVHEPLGTWAGLLTALAFVPSVGPHKLWTEPAAQALAPLIVVGSLCA 321
            LA A L  L  +   M +A+LAG+EPHPP  RGPYL A  AL L +    L+  P   W G   ALA +P VG HK  TE  A  LAP++VVGSL A
Sbjct:   10 LALATLVSLLAMFACMNIALLAGIEPHPPAARGPYLAATMALCLAAAVQFLLRAPAARWFGFAAALAVIPGVGLHKFATEVNAPLLAPVLVVGSLSA 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54446.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Y5PHJ1_9BURK7.550e-2555.24Uncharacterized protein n=1 Tax=Burkholderiaceae b... [more]
UPI00156358812.920e-1949.48hypothetical protein n=1 Tax=Aquabacterium terrae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54446contigP-wetherbeei_contig54446:40..405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122201.AUAZ01000010_gene2561
Model size366
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.02e-09
EggNOG OGs2EAP4@1|root,3193Y@2|Bacteria,1Q1R1@1224|Proteobacteria,1SW37@1236|Gammaproteobacteria
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.6300573-CDS-P-wetherbeei_contig54446:39..4051683186813.6300573-CDS-P-wetherbeei_contig54446:39..405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54446 40..405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54446.1.1prot_P-wetherbeei_contig54446.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54446 40..405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54446.1.1

>prot_P-wetherbeei_contig54446.1.1 ID=prot_P-wetherbeei_contig54446.1.1|Name=mRNA_P-wetherbeei_contig54446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MTNPPRTRPHLAAAALAGLFLLAVVMFVAMLAGVEPHPPGTRGPYLGAVA
ALALISIWLLLVHEPLGTWAGLLTALAFVPSVGPHKLWTEPAAQALAPLI
VVGSLCAVVALVTLGRAALAR*
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mRNA from alignment at P-wetherbeei_contig54446:40..405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54446.1.1 ID=mRNA_P-wetherbeei_contig54446.1.1|Name=mRNA_P-wetherbeei_contig54446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig54446:40..405+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAAACCCTCCCCGCACCCGCCCGCACCTGGCCGCCGCCGCGCTGGC
CGGCCTGTTCCTGCTCGCCGTGGTGATGTTCGTGGCCATGCTGGCCGGCG
TCGAGCCGCACCCGCCCGGCACCCGCGGGCCCTACCTCGGCGCGGTGGCC
GCGCTGGCCCTGATCAGCATCTGGTTGCTGTTGGTGCACGAGCCGCTGGG
CACCTGGGCGGGGCTGCTCACGGCGCTGGCCTTCGTGCCTTCGGTCGGCC
CCCACAAGCTCTGGACCGAGCCCGCCGCGCAGGCACTGGCCCCGCTGATC
GTGGTGGGCTCGCTGTGCGCCGTGGTGGCGCTCGTCACGCTGGGCCGCGC
CGCGCTGGCGCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54446:40..405+

>mRNA_P-wetherbeei_contig54446.1.1 ID=mRNA_P-wetherbeei_contig54446.1.1|Name=mRNA_P-wetherbeei_contig54446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig54446:40..405+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAAACCCTCCCCGCACCCGCCCGCACCTGGCCGCCGCCGCGCTGGC
CGGCCTGTTCCTGCTCGCCGTGGTGATGTTCGTGGCCATGCTGGCCGGCG
TCGAGCCGCACCCGCCCGGCACCCGCGGGCCCTACCTCGGCGCGGTGGCC
GCGCTGGCCCTGATCAGCATCTGGTTGCTGTTGGTGCACGAGCCGCTGGG
CACCTGGGCGGGGCTGCTCACGGCGCTGGCCTTCGTGCCTTCGGTCGGCC
CCCACAAGCTCTGGACCGAGCCCGCCGCGCAGGCACTGGCCCCGCTGATC
GTGGTGGGCTCGCTGTGCGCCGTGGTGGCGCTCGTCACGCTGGGCCGCGC
CGCGCTGGCGCGCTGA
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