mRNA_P-wetherbeei_contig54229.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54229.1.1
Unique NamemRNA_P-wetherbeei_contig54229.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54229.1.1 vs. uniprot
Match: A0A7X7PKE5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A7X7PKE5_9BACT)

HSP 1 Score: 172 bits (436), Expect = 9.810e-47
Identity = 80/150 (53.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query:    4 LVTCCIDVEFGAAEDGSQDIVFAGTGESQPFTSGTPGGKSEGIGVLKLTTPVSTALTQPHINPWKREAKNLAGTGIFRVAHEPGNSGVVIAATSSGLWRRIGAFSENADWTRVTSGPFDFDADDGEWCTDVIWAPAKGGTPSRLWVALVD 453
            LV   + V FG+A DGS+D+V   TGE +P     PG  + GIG+L L  PV+ AL  P +NPW+REA NL G G++R+  +P +   ++AATS GL+ R GAF E+ADW R+   PFDFDADDG + TDV+W PA G TPSRLWVALV+
Sbjct:  141 LVCGALHVTFGSASDGSEDVVHVATGELRPDRVAHPGMSNGGIGILHLAVPVTDALADPFMNPWRREANNLTGAGVYRITRDPASPDRLVAATSIGLFMRDGAFVEDADWQRIAVPPFDFDADDGPFTTDVVWTPADGATPSRLWVALVN 290          
BLAST of mRNA_P-wetherbeei_contig54229.1.1 vs. uniprot
Match: A0A6L8VER3_9RHOB (Uncharacterized protein n=1 Tax=Frigidibacter albus TaxID=1465486 RepID=A0A6L8VER3_9RHOB)

HSP 1 Score: 150 bits (378), Expect = 6.230e-39
Identity = 77/166 (46.39%), Postives = 102/166 (61.45%), Query Frame = 1
Query:   19 IDVEFGAA---EDGSQDIVFAGTGESQPFTSGTPGGKSEGIGVLKLTTPVSTALTQPHINPWKREAKNLAGTGIFRVAHEPG--------NSGVVIAATSSGLWRRIGAFSENADWTRVTSGPFDFDADDGEWCTDVIWAPAKGGTPSRLWVALVDNTAFSDTGIW 483
            +DV+FG     +D  +D+V+ GTGE++P    TPGGKS GIGVL+L   ++ A+  P  NPW+REA+NL G GIFR+ H+P          +  ++AATS+GLW R G F E ADWTRV   P  FDADDG +C DV+W   KG     LWV +    A  + G+W
Sbjct:  135 MDVQFGVTGGNDDPDKDVVYVGTGEARPVLLATPGGKSAGIGVLRLEGTITAAVAAPGTNPWQREARNLTGAGIFRLTHDPAAALSFGAAGANTLVAATSNGLWARSGGFVEGADWTRVNLTPSAFDADDGPYCPDVVWND-KG-----LWVIVAGGRA--EDGLW 292          
BLAST of mRNA_P-wetherbeei_contig54229.1.1 vs. uniprot
Match: UPI001652C33E (hypothetical protein n=1 Tax=Roseobacter litoralis TaxID=42443 RepID=UPI001652C33E)

HSP 1 Score: 136 bits (342), Expect = 4.330e-34
Identity = 81/165 (49.09%), Postives = 99/165 (60.00%), Query Frame = 1
Query:    1 SLVTCCIDVEFGAA---EDGSQDIVFAGTGESQPFTSGTPGGKSEGIGVLKLTTPVSTALTQPHINPWKREAKNLAGTGIFRVAHEPG------NSGVVIAATSSGLWRRIGAFSENADWTRVTSGPFDFDADDGEW--CTDVIWAPAKGGTPSRLWVALVDNTA 462
            SL T  + VEFGA    ++ ++D+V+  TGE  P     PG K  GIGVL+L  P+  AL  P  NPWKREA+NLAG GIFR+A +PG          ++AATS+GLW R G F E+ADW RV   P  F AD  EW  C+DVIW   KG     LWV LVD+ A
Sbjct:  129 SLTTGALWVEFGATGGVDEPAKDVVYVATGEGIPQFGEIPGRKMGGIGVLRLDVPLPEALANPLQNPWKREARNLAGQGIFRLARDPGVTPTLGGDATLVAATSTGLWSRSGGFIEDADWQRVELTPTPF-ADLSEWSYCSDVIWND-KG-----LWVTLVDSAA 286          
BLAST of mRNA_P-wetherbeei_contig54229.1.1 vs. uniprot
Match: A0A4Q5VZC1_9BURK (Uncharacterized protein (Fragment) n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q5VZC1_9BURK)

HSP 1 Score: 108 bits (269), Expect = 1.940e-24
Identity = 63/161 (39.13%), Postives = 91/161 (56.52%), Query Frame = 1
Query:   19 IDVEFGAAEDGSQDIVFAGTGE------SQPFTSGTPGGKSEGIGVLKLTTPVSTALTQPHINPWKREAKNLAGTGIFRVAHEPGNSGVVIAATSSGLWRRIGAFSENADWTRVTSGPFDFDADDGEWCTDVIWAPAKGGTPSRLWVALVDNTAFSDTGIW 483
            + VEFGA E   +D VF GTGE         FT G+PG    G+G+L    PV +   QP  +PW+REA NL G G++R+  +P   G ++AAT +GL++R  A + + DW R T   F   A   + C+D++W PA G  P+R WV +V     ++ G+W
Sbjct:  155 LHVEFGAVE--GEDQVFVGTGEVGVGIAGVDFT-GSPGSSEGGVGILVGDRPVKSV--QP--DPWRREAPNLVGNGVYRIVRDPTAGGTLLAATLTGLYQRPAAPAADVDWVRPTGTLF---ATLAQPCSDLLWTPAHGTAPARCWVWVVSG---ANAGLW 302          
BLAST of mRNA_P-wetherbeei_contig54229.1.1 vs. uniprot
Match: A0A7Y6NS63_9BURK (Uncharacterized protein n=1 Tax=Schlegelella koreensis TaxID=2742824 RepID=A0A7Y6NS63_9BURK)

HSP 1 Score: 100 bits (248), Expect = 1.890e-21
Identity = 62/148 (41.89%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   19 IDVEFGAAEDGSQDIVFAGTGESQPFTSGTPGGKSEGIGVLKLTTPVSTALTQPHINPWKREAKNLAGTGIFRVAHEPGNSGVVIAATSSGLWRRIGAFSENADWTRVTSGPFDFDADDGEWCTDVIWAPA-KGGTPSRLWVALVDNT 459
            I V+FG  E    D V+ GTGE      G PG    G+G+L    P          +PWK EA NLAG+G++R+A EPG S V +AAT  GL++R      NA W  V + PFD  A  G  C+DV+W PA  GG P+R+WV ++  +
Sbjct:  144 IAVQFGVTE--LSDEVWVGTGEVSTPLDGQPGSSLGGVGILHALHPA----VPDEPDPWKIEATNLAGSGVYRIALEPGGSRV-LAATRIGLFQRPAGGGLNAPWELVQAAPFD--AYRGA-CSDVLWTPAVPGGAPARVWVWMMSGS 281          
BLAST of mRNA_P-wetherbeei_contig54229.1.1 vs. uniprot
Match: A0A1X6Z3H2_9RHOB (Uncharacterized protein n=1 Tax=Ruegeria meonggei TaxID=1446476 RepID=A0A1X6Z3H2_9RHOB)

HSP 1 Score: 92.4 bits (228), Expect = 9.140e-19
Identity = 62/163 (38.04%), Postives = 86/163 (52.76%), Query Frame = 1
Query:   25 VEFGAAEDGSQDIVFAGTGESQPFTSGTPGGKSEGIGVLKLTTPVSTALTQPHINPWKREAKNLAGTGIFRVAHEPG--------NSGVVIAATSSGLWRRIGAFSENADWTR--VTSGPFDFDADDGEWCTDVIWAPAKGGTPSRLWVALVDNTAFSDTGIW 483
            VE+GA  +   D+++ GTGE +P  +   G K  GIGVL+L   V   L     N W+REA NL G G++R+A +P         ++  ++AATS GL+ R G F E+A WT    T G F  D +    CTDV+W      T   L+VAL+      D G+W
Sbjct:  137 VEWGATAN--DDVIYVGTGELKPRFAPRAGTKHGGIGVLRLNGTVGATLANLGTNRWQREAVNLIGMGVYRLARDPATPLTQTAADTARIVAATSHGLFVRDGPFVEDATWTYQDFTGGQFGRDIEGA--CTDVLW------TVQGLFVALMGVGDAVD-GVW 288          
BLAST of mRNA_P-wetherbeei_contig54229.1.1 vs. uniprot
Match: UPI001E60AA41 (hypothetical protein n=1 Tax=Arthrobacter sp. Bi26 TaxID=2822350 RepID=UPI001E60AA41)

HSP 1 Score: 90.5 bits (223), Expect = 4.180e-18
Identity = 55/132 (41.67%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   58 DIVFAGTGE----SQPFTSGTPGGKSEGIGVLKLTTPVSTALTQPHINPWKREAKNLAGTGIFRVAHEPGNSGVVIAATSSGLWRRIGAFSENADWTRVTSGPFDFDADDGEWCTDVIWAPAKGGTPSRLWV 441
            D +F GTGE    SQ    G PG    GIG+L    P  +A      +PW REA NL G  + R+A +PG SGV IAAT+ GL RR         W RV++ P +    +   CTDV+W    G  P RLWV
Sbjct:  154 DEIFVGTGEPYHYSQNRVGGRPGRSLGGIGILVAQGPAGSA----DADPWTREAPNLVGEAVNRIALQPGGSGV-IAATTIGLLRRPDPVPAAGKWARVSASPLNGVTSE---CTDVLWTSGAGTRPERLWV 277          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54229.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7X7PKE5_9BACT9.810e-4753.33Uncharacterized protein n=1 Tax=Candidatus Cloacim... [more]
A0A6L8VER3_9RHOB6.230e-3946.39Uncharacterized protein n=1 Tax=Frigidibacter albu... [more]
UPI001652C33E4.330e-3449.09hypothetical protein n=1 Tax=Roseobacter litoralis... [more]
A0A4Q5VZC1_9BURK1.940e-2439.13Uncharacterized protein (Fragment) n=1 Tax=Comamon... [more]
A0A7Y6NS63_9BURK1.890e-2141.89Uncharacterized protein n=1 Tax=Schlegelella koree... [more]
A0A1X6Z3H2_9RHOB9.140e-1938.04Uncharacterized protein n=1 Tax=Ruegeria meonggei ... [more]
UPI001E60AA414.180e-1841.67hypothetical protein n=1 Tax=Arthrobacter sp. Bi26... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54229contigP-wetherbeei_contig54229:2..484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1214101.BN159_7442
PFAMsASH,BNR_2,Calx-beta,F5_F8_type_C,VCBS
Model size483
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.34e-16
EggNOG OGsCOG4409@1|root,COG4409@2|Bacteria
Descriptionexo-alpha-(2->6)-sialidase activity
Cds size483
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.8318756-CDS-P-wetherbeei_contig54229:1..4841683186810.8318756-CDS-P-wetherbeei_contig54229:1..484Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54229 2..484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54229.1.1prot_P-wetherbeei_contig54229.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54229 2..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54229.1.1

>prot_P-wetherbeei_contig54229.1.1 ID=prot_P-wetherbeei_contig54229.1.1|Name=mRNA_P-wetherbeei_contig54229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
SLVTCCIDVEFGAAEDGSQDIVFAGTGESQPFTSGTPGGKSEGIGVLKLT
TPVSTALTQPHINPWKREAKNLAGTGIFRVAHEPGNSGVVIAATSSGLWR
RIGAFSENADWTRVTSGPFDFDADDGEWCTDVIWAPAKGGTPSRLWVALV
DNTAFSDTGIW
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mRNA from alignment at P-wetherbeei_contig54229:2..484-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54229.1.1 ID=mRNA_P-wetherbeei_contig54229.1.1|Name=mRNA_P-wetherbeei_contig54229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig54229:2..484- (Phaeothamnion wetherbeei SAG_119_79)
AGCCTGGTCACCTGCTGCATCGACGTCGAGTTCGGCGCGGCGGAAGACGG CTCTCAGGATATCGTCTTTGCCGGCACCGGCGAGAGCCAGCCCTTCACGT CCGGCACCCCGGGTGGCAAGTCGGAGGGCATCGGTGTCCTGAAACTAACG ACCCCGGTGTCGACGGCGCTGACCCAGCCGCACATCAATCCGTGGAAGCG CGAAGCCAAGAATCTGGCCGGCACCGGCATATTCCGCGTCGCCCACGAGC CCGGCAACAGTGGGGTGGTGATTGCTGCGACCTCCAGCGGTCTGTGGCGG CGCATCGGCGCGTTCTCCGAAAACGCGGATTGGACGCGGGTCACCAGCGG TCCGTTCGATTTCGACGCCGATGACGGGGAATGGTGCACCGACGTCATCT GGGCGCCGGCCAAGGGCGGCACGCCCTCGCGCCTGTGGGTGGCGTTGGTC GACAACACCGCCTTCAGCGATACCGGCATCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54229:2..484-

>mRNA_P-wetherbeei_contig54229.1.1 ID=mRNA_P-wetherbeei_contig54229.1.1|Name=mRNA_P-wetherbeei_contig54229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig54229:2..484- (Phaeothamnion wetherbeei SAG_119_79)
AGCCTGGTCACCTGCTGCATCGACGTCGAGTTCGGCGCGGCGGAAGACGG
CTCTCAGGATATCGTCTTTGCCGGCACCGGCGAGAGCCAGCCCTTCACGT
CCGGCACCCCGGGTGGCAAGTCGGAGGGCATCGGTGTCCTGAAACTAACG
ACCCCGGTGTCGACGGCGCTGACCCAGCCGCACATCAATCCGTGGAAGCG
CGAAGCCAAGAATCTGGCCGGCACCGGCATATTCCGCGTCGCCCACGAGC
CCGGCAACAGTGGGGTGGTGATTGCTGCGACCTCCAGCGGTCTGTGGCGG
CGCATCGGCGCGTTCTCCGAAAACGCGGATTGGACGCGGGTCACCAGCGG
TCCGTTCGATTTCGACGCCGATGACGGGGAATGGTGCACCGACGTCATCT
GGGCGCCGGCCAAGGGCGGCACGCCCTCGCGCCTGTGGGTGGCGTTGGTC
GACAACACCGCCTTCAGCGATACCGGCATCTGG
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