mRNA_P-wetherbeei_contig54206.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54206.1.1
Unique NamemRNA_P-wetherbeei_contig54206.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54206.1.1 vs. uniprot
Match: A0A6M5YWI7_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YWI7_9BACT)

HSP 1 Score: 138 bits (348), Expect = 8.290e-40
Identity = 70/99 (70.71%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:    1 CSESNDGPRXXXXXXXXXXXXXXXXXXXXCAERPDAAETESQPTVAAPELTGELFTFSVAALAAGPPEHTGRFHGLFPPERAGVDARSAALFERHVMRC 297
            C ESND P                     C ERPDAA+TESQPTVAAPELTGELF FSVAALAAG  EHTGRFHGLFPPERAGVDARSAALFERHVM C
Sbjct:   66 CHESNDSPDPEQATAPKPAKPGTPVSCPCCGERPDAAQTESQPTVAAPELTGELFAFSVAALAAGSSEHTGRFHGLFPPERAGVDARSAALFERHVMHC 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54206.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6M5YWI7_9BACT8.290e-4070.71Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54206contigP-wetherbeei_contig54206:2..301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size300
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.4100244-CDS-P-wetherbeei_contig54206:1..3011683186810.4100244-CDS-P-wetherbeei_contig54206:1..301Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54206 2..301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54206.1.1prot_P-wetherbeei_contig54206.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54206 2..301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54206.1.1

>prot_P-wetherbeei_contig54206.1.1 ID=prot_P-wetherbeei_contig54206.1.1|Name=mRNA_P-wetherbeei_contig54206.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
CSESNDGPRPGPAPAPKPAKPGVPAPCPCCAERPDAAETESQPTVAAPEL
TGELFTFSVAALAAGPPEHTGRFHGLFPPERAGVDARSAALFERHVMRC*
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mRNA from alignment at P-wetherbeei_contig54206:2..301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54206.1.1 ID=mRNA_P-wetherbeei_contig54206.1.1|Name=mRNA_P-wetherbeei_contig54206.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig54206:2..301+ (Phaeothamnion wetherbeei SAG_119_79)
TGCTCCGAATCGAACGATGGCCCCAGGCCGGGACCGGCGCCCGCACCAAA
GCCGGCGAAACCCGGTGTGCCGGCGCCGTGCCCCTGCTGCGCCGAGCGGC
CCGACGCCGCGGAGACGGAAAGCCAACCGACGGTTGCGGCCCCGGAACTG
ACCGGCGAACTGTTCACCTTTTCGGTCGCGGCTCTGGCCGCCGGCCCCCC
CGAACACACCGGCCGTTTCCACGGGCTGTTCCCGCCCGAACGCGCCGGCG
TAGACGCCCGCTCGGCCGCGCTCTTTGAACGTCACGTCATGCGCTGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54206:2..301+

>mRNA_P-wetherbeei_contig54206.1.1 ID=mRNA_P-wetherbeei_contig54206.1.1|Name=mRNA_P-wetherbeei_contig54206.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig54206:2..301+ (Phaeothamnion wetherbeei SAG_119_79)
TGCTCCGAATCGAACGATGGCCCCAGGCCGGGACCGGCGCCCGCACCAAA
GCCGGCGAAACCCGGTGTGCCGGCGCCGTGCCCCTGCTGCGCCGAGCGGC
CCGACGCCGCGGAGACGGAAAGCCAACCGACGGTTGCGGCCCCGGAACTG
ACCGGCGAACTGTTCACCTTTTCGGTCGCGGCTCTGGCCGCCGGCCCCCC
CGAACACACCGGCCGTTTCCACGGGCTGTTCCCGCCCGAACGCGCCGGCG
TAGACGCCCGCTCGGCCGCGCTCTTTGAACGTCACGTCATGCGCTGCTAA
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