mRNA_P-wetherbeei_contig5406.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5406.1.1
Unique NamemRNA_P-wetherbeei_contig5406.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5406.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5406contigP-wetherbeei_contig5406:339..2397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTM8
PFAMsPPR,PPR_2
Model size1392
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.67e-08
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size1389
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.1309488-CDS-P-wetherbeei_contig5406:340..6371683186808.1309488-CDS-P-wetherbeei_contig5406:340..637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5406 341..637 -
1683186808.1403315-CDS-P-wetherbeei_contig5406:954..10891683186808.1403315-CDS-P-wetherbeei_contig5406:954..1089Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5406 955..1089 -
1683186808.1484194-CDS-P-wetherbeei_contig5406:1440..23971683186808.1484194-CDS-P-wetherbeei_contig5406:1440..2397Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5406 1441..2397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5406.1.1prot_P-wetherbeei_contig5406.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5406 341..2397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5406.1.1

>prot_P-wetherbeei_contig5406.1.1 ID=prot_P-wetherbeei_contig5406.1.1|Name=mRNA_P-wetherbeei_contig5406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=463bp
ASGGDAAARGVRAAIGATLDRYKMLSKEARLAAAAAAAAAAVARAGDSVG
RASSMGSKVPNGVIRWPLASAFTGGDGSGGERRVDGAAVAAIVVLERCNV
LMRAYGEAGEIALVDNLLTEMAKAGVAIDARFCNAAMTAALRCGRPDRAL
QIFGAATGLSINTNAVAAGPRGTGADDVPGGRRCSTAGGTGDVARSGAGG
SGAIEMFARGAPVAPNVKLLTTLITAYGHSNCLENAFAVLETFAGTGSTA
NCGGKGSGVVVGRKGDEGSSSSSDRGGIAPDTGLLNALAQACARTGQPDR
ARRVFTELMPSYGVKPDVQTYNILINAFARAKRPAEALSFFEAMLAAGLE
PSRVTMTVVIKAHMRRGDTAAALAVLAAMGRQGVRADAATFDTVILGLMR
RLRWQQAWAVFQAMKESGVRPTLVTYTSLMSGFTRCGFPERAIELFEEMR
AGSGTGAAAKARG
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mRNA from alignment at P-wetherbeei_contig5406:339..2397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5406.1.1 ID=mRNA_P-wetherbeei_contig5406.1.1|Name=mRNA_P-wetherbeei_contig5406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2059bp|location=Sequence derived from alignment at P-wetherbeei_contig5406:339..2397- (Phaeothamnion wetherbeei SAG_119_79)
GCCAGCGGTGGAGATGCGGCGGCGAGAGGGGTGCGCGCCGCGATTGGCGC
GACGTTGGACCGCTACAAGATGCTCAGCAAGGAAGCGCGCCTCGCTGCTG
CTGCTGCGGCCGCCGCTGCCGCGGTCGCCCGCGCTGGAGACTCTGTCGGG
AGAGCATCGTCGATGGGATCAAAGGTGCCAAACGGGGTGATTCGATGGCC
GCTCGCTTCCGCGTTCACCGGCGGCGACGGCAGCGGCGGCGAGCGGCGTG
TGGACGGCGCCGCCGTTGCCGCCATCGTCGTCCTCGAGCGCTGCAACGTG
CTCATGCGCGCCTACGGCGAGGCCGGCGAGATTGCTTTAGTGGACAACCT
CCTCACGGAGATGGCCAAGGCAGGCGTCGCCATCGACGCGCGCTTCTGCA
ACGCCGCCATGACCGCGGCGCTGCGCTGCGGCCGGCCGGACCGGGCGCTG
CAGATATTCGGCGCCGCGACCGGCCTCTCGATCAACACTAACGCCGTCGC
GGCCGGCCCCAGAGGAACAGGGGCCGACGACGTGCCGGGCGGCCGCCGCT
GTTCCACCGCGGGCGGCACTGGCGACGTCGCGCGCAGCGGCGCCGGCGGC
AGCGGCGCAATCGAGATGTTTGCACGGGGAGCGCCTGTCGCGCCGAACGT
CAAGCTTTTGACGACGCTCATCACCGCGTACGGGCATTCAAACTGCCTCG
AGAACGCCTTTGCGGTGCTCGAAACGTTCGCCGGTACCGGTAGCACCGCC
AACTGCGGCGGTAAAGGAAGCGGCGTAGTTGTTGGGAGGAAAGGCGACGA
AGGCAGCAGCAGTAGCAGCGACCGCGGCGGTATCGCTCCGGACACGGGGC
TTCTGAACGCGCTGGCCCAGGCATGCGCCCGTACCGGACAACCGGACCGC
GCGCGGCGGGTCTTTACCGAGCTCATGCCGAGCTACGGCGTCAAGCCGGA
CGTGCAGGTGCGTGTTTCTTTGTTTGTAAGGTGGCTCGGCTGGGGCAGTG
GACGGAACGAAGGGCCCGCCGTGCCGCTGTTTTGCCTGTTCTCCAGCCAC
CCCGTGCATCCCTGGCGGTGAATGCTGGGATAGCTGTCGGCCATCCATGC
GTTGCTTGGCGCAGGTTTCTTTCTTGTCAGCTCCGATTAGCCCAGCTGTC
ATGCCTTTAGCGGCAGTGGGGGCTGCTTGTGAAGGTTTACTGTACGCACA
GGACTACCTTCACACTCACCCTTTGCTCATGTTAAGTCGTGTCGTGTCTC
CTCTTTTTCCTTCCTGCTGCCTGCGCTTGCCGTGTTCGCCCCCTGCCTGC
CCCTTCAGACATACAATATACTGATCAACGCCTTTGCGCGCGCCAAGCGG
CCCGCTGAAGCGCTGTCGTTCTTCGAGGCGATGCTGGCAGCGGGGCTTGA
GCCGTCCCGCGTCACCATGACCGTCGTTATCAAGGCACACATGGTGAGCG
GAGCGAGCGGAAGGCACGCTATTTTTGCCCTTTTCTGACACTATCTTCTT
TTAGGTTTTGACTAGTTTTCTGACGTCTCTCAAACTTTGGCATGTCGTTT
TTCTTTGTTGAAAATTCGCTTCTTTCCGGATGTTGGTTAGTACGGCCTCT
TTCGGATTTTGGCTAGTTCAGACCCAGAAGTATGAAAGGCGCGCGTACGC
ATTAATTGGGCAAGCTGGCTGGGAGAACTAACCTGGTTTCCTCCCTGCCG
CCTTTCCCGTCCCTGCGCTGTACTGTCCACCCGCTGCCGACCCTCTGAAA
CTCTTCACAGCGGCGCGGCGACACGGCGGCGGCGCTGGCGGTGCTGGCGG
CGATGGGGCGGCAGGGCGTGCGCGCTGACGCCGCCACCTTCGATACCGTC
ATCCTCGGCCTGATGCGGCGGCTCCGCTGGCAACAGGCGTGGGCCGTCTT
CCAGGCCATGAAAGAGAGCGGCGTCCGCCCGACGCTGGTCACGTACACGT
CGCTCATGAGCGGCTTCACGCGCTGCGGCTTTCCCGAGCGGGCCATCGAG
CTGTTTGAGGAGATGCGGGCGGGTTCGGGCACCGGCGCCGCCGCCAAGGC
CCGCGGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5406:339..2397-

>mRNA_P-wetherbeei_contig5406.1.1 ID=mRNA_P-wetherbeei_contig5406.1.1|Name=mRNA_P-wetherbeei_contig5406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1389bp|location=Sequence derived from alignment at P-wetherbeei_contig5406:339..2397- (Phaeothamnion wetherbeei SAG_119_79)
GCCAGCGGTGGAGATGCGGCGGCGAGAGGGGTGCGCGCCGCGATTGGCGC
GACGTTGGACCGCTACAAGATGCTCAGCAAGGAAGCGCGCCTCGCTGCTG
CTGCTGCGGCCGCCGCTGCCGCGGTCGCCCGCGCTGGAGACTCTGTCGGG
AGAGCATCGTCGATGGGATCAAAGGTGCCAAACGGGGTGATTCGATGGCC
GCTCGCTTCCGCGTTCACCGGCGGCGACGGCAGCGGCGGCGAGCGGCGTG
TGGACGGCGCCGCCGTTGCCGCCATCGTCGTCCTCGAGCGCTGCAACGTG
CTCATGCGCGCCTACGGCGAGGCCGGCGAGATTGCTTTAGTGGACAACCT
CCTCACGGAGATGGCCAAGGCAGGCGTCGCCATCGACGCGCGCTTCTGCA
ACGCCGCCATGACCGCGGCGCTGCGCTGCGGCCGGCCGGACCGGGCGCTG
CAGATATTCGGCGCCGCGACCGGCCTCTCGATCAACACTAACGCCGTCGC
GGCCGGCCCCAGAGGAACAGGGGCCGACGACGTGCCGGGCGGCCGCCGCT
GTTCCACCGCGGGCGGCACTGGCGACGTCGCGCGCAGCGGCGCCGGCGGC
AGCGGCGCAATCGAGATGTTTGCACGGGGAGCGCCTGTCGCGCCGAACGT
CAAGCTTTTGACGACGCTCATCACCGCGTACGGGCATTCAAACTGCCTCG
AGAACGCCTTTGCGGTGCTCGAAACGTTCGCCGGTACCGGTAGCACCGCC
AACTGCGGCGGTAAAGGAAGCGGCGTAGTTGTTGGGAGGAAAGGCGACGA
AGGCAGCAGCAGTAGCAGCGACCGCGGCGGTATCGCTCCGGACACGGGGC
TTCTGAACGCGCTGGCCCAGGCATGCGCCCGTACCGGACAACCGGACCGC
GCGCGGCGGGTCTTTACCGAGCTCATGCCGAGCTACGGCGTCAAGCCGGA
CGTGCAGACATACAATATACTGATCAACGCCTTTGCGCGCGCCAAGCGGC
CCGCTGAAGCGCTGTCGTTCTTCGAGGCGATGCTGGCAGCGGGGCTTGAG
CCGTCCCGCGTCACCATGACCGTCGTTATCAAGGCACACATGCGGCGCGG
CGACACGGCGGCGGCGCTGGCGGTGCTGGCGGCGATGGGGCGGCAGGGCG
TGCGCGCTGACGCCGCCACCTTCGATACCGTCATCCTCGGCCTGATGCGG
CGGCTCCGCTGGCAACAGGCGTGGGCCGTCTTCCAGGCCATGAAAGAGAG
CGGCGTCCGCCCGACGCTGGTCACGTACACGTCGCTCATGAGCGGCTTCA
CGCGCTGCGGCTTTCCCGAGCGGGCCATCGAGCTGTTTGAGGAGATGCGG
GCGGGTTCGGGCACCGGCGCCGCCGCCAAGGCCCGCGGC
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