mRNA_P-wetherbeei_contig5405.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5405.3.1
Unique NamemRNA_P-wetherbeei_contig5405.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5405.3.1 vs. uniprot
Match: A0A6H5KAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT0_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 2.610e-40
Identity = 123/354 (34.75%), Postives = 168/354 (47.46%), Query Frame = 1
Query:    1 PERTRAVAIFFRDLASSAAGAVMAVVVLALDTPVLAPLAPAAPEGGAARPGPRPHEPISGRHMPQIIARPRALLSEPVDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------AARHRRGWAETTPLGFRVVATAALLRPNAFLAASPFAITRCAAVGNSPGVTGRTMYHSEERCAGRLSRQRVAADYHYVLRCTAHRGANDPSCYTVRCRHESFREMRRAGLAEHLREVERIDATRQREAKRKALEAKIAAGVALLEERRARQDALARAGALKEDSGGGGGTEFIGRGXXXXXXXXXXXXXXXXXXWRMRLAASVMLEARGGWERRRDEGGSIFF 1005
            PERTRAVA FFRD + S++ +VM VV LALDTP L PL   A E     P P P E      +P+++  P  +L E V S                                                   + RHRR W E    GFR  A   LL P+ ++    F +T+ AA+ N+  V GR+ +HSE+RC  +L RQR A DY YV     HRG +DP  Y+V C+HE    + R GL  +  E+ R+   R+R+AK  AL+AK+  G A L +RRAR+DA  R+ A K D+                              W +R+  S ++E+RG WE+R+D GGS+F+
Sbjct: 1011 PERTRAVASFFRDASKSSSDSVMVVVALALDTPKLTPLV-IAWEREPFEPEPAPDEDTLDV-VPRVMIPPGVVLEEGVVSDLGGHIAPDAIVLTKAEKKVDFSPPEALAGDRRGGGGAAVKRSRKAGKEKESVRHRRDWKEVDKKGFRRYAVYQLLEPDGYMQTLGFGVTKRAALPNTAAVCGRSTFHSEQRCTEQLCRQRTAKDYAYVSANDQHRGPSDPGSYSVSCKHERMAALLRTGLERYNAEMARVAVERERQAKDAALQAKVEIGKAKLADRRAREDAATRSLARKTDA---------------QHLKISAGADRSRHKWELRMQDSHVVESRGPWEQRKDLGGSVFY 1347          
BLAST of mRNA_P-wetherbeei_contig5405.3.1 vs. uniprot
Match: A0A329SV37_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SV37_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.570e-11
Identity = 102/358 (28.49%), Postives = 152/358 (42.46%), Query Frame = 1
Query:    1 PERTRAVAIFFRDLASSAAGAVMAVVVLALDTPVLAPLAPA--------APEGGAARPGPRPHEPISGRHMPQIIARPRALLSEPVDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARHRRGWAETTPLG-FR---VVATAALLRPNAFLAASPFAITRCAAVGNSPGVTGRTMYHSEERCAGRLSRQRVAADYHYVLRCTAHRGANDPSCYTVRCRHESFREMRRAGLAEHLREVERIDATRQREAKRKALEAKIAAGVALLEERRARQDALAR---AGALKEDSGGGGGT-----EFIGRGXXXXXXXXXXXXXXXXXXWRMRLAASVMLEARGGWERRR---DEGGSIFF 1005
            PE T+ VA+F R+   S++ A++ ++VLALD PVL+PL  A         PE  AA       E   GR M  +     +LLS  ++S                                   HRRGW+E T    FR   ++     + P   + A   ++T   A  N+PGV GR  +H  +     L R+RV  D  YV++     G NDPS ++V   HE+  ++  A L+ +L  +   +A    E K   +E K+ AG   LE +R  Q  L +   A A + ++   GG      E IG+                   W  R+A S++LE +G WE R    D  G +F+
Sbjct:  508 PESTKTVALFERNSKLSSSNAILVMLVLALDAPVLSPLWFAWHVGSKMPPPELEAAVCSLAEAETGFGRVMAFVSPCLSSLLSTRLESVLDGLLPGTITLLNDAAQEEDHWLQLVDLPSSPVGHRRGWSEFTDRHTFRQWFLLTQGRTMLPRYDVVAQYCSVT--IAHPNAPGVCGRYCWHEVDPVEKFLCRRRVEKDLLYVIQNHLTSGPNDPSYFSVIMSHETMADVLGARLSSYLAMIAEREARAAYEKKLYEIEQKLEAGRLALEGKRQEQKRLEQELEAAAAQAEARSKGGVNSATEEAIGQ------------------EWAQRMAGSIVLEQQGLWEMREITADSSGVVFY 845          
BLAST of mRNA_P-wetherbeei_contig5405.3.1 vs. uniprot
Match: A0A0P1AVT9_PLAHL (Acyl-CoA-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVT9_PLAHL)

HSP 1 Score: 73.2 bits (178), Expect = 1.800e-10
Identity = 100/352 (28.41%), Postives = 148/352 (42.05%), Query Frame = 1
Query:    1 PERTRAVAIFFRDLASSAAGAVMAVVVLALDTPVLAPLAPAAPEGGAARPGPRPHEPISG---RHMPQIIARPRALLSEPVDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARHRRGWAETTPL-GFR---VVATAALLRPNAFLAASPFAITRCAAVGNSPGVTGRTMYHSEERCAGRLSRQRVAADYHYVLRCTAHRGANDPSCYTVRCRHESFREMRRAGLAEHLREVERIDATRQR----EAKRKALEAKIAAGVALLEERRARQDALAR---AGALKEDSGGGGGTEFIGRGXXXXXXXXXXXXXXXXXXWRMRLAASVMLEARGGWERRR---DEGGSIFF 1005
            PE T+ V +F RD   S++ +++  +VLALDTP+LAP         +  P   P   I     R +P     P+ LLS P+DS                                   HRRGW E +    FR   ++   + L P   +     +IT   A  N PGV GR  +H+ +     LSR+R+  D+ Y+L+     G+N+  C+TV   HE   ++  A L+ +L     IDA R+     EAK   +E K+A G   LE++R  Q  + +   + A++ D    GG                         W  RL  S+++E  G WE R    D GG +FF
Sbjct:  495 PEYTKTVGLFKRDNKLSSSNSIVVRLVLALDTPILAPKC-FVWHVDSEMPPMEPENVIDNGIIRIVPVTSPCPKTLLSSPLDS----ILDGLLPSTITLFNNKAQEEDHWLQLTDIVGHRRGWTEFSARHSFRQWLLLTDESTLTPQYDVDMQHCSIT--IAHPNVPGVCGRHCWHAIDPIVNFLSRRRIENDFLYILQNHKTSGSNEAYCFTVIMNHEVMVDVIGAPLSTYLA----IDANREARVAYEAKLCEIERKLAIGRQALEKKRQEQRRIEQELESTAVRADIRSKGGLN-------------DAVEEAVALEWTQRLNGSIVIEQHGHWEMREIMVDGGGVVFF 822          
BLAST of mRNA_P-wetherbeei_contig5405.3.1 vs. uniprot
Match: W2PI59_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PI59_PHYPN)

HSP 1 Score: 71.2 bits (173), Expect = 7.740e-10
Identity = 97/357 (27.17%), Postives = 147/357 (41.18%), Query Frame = 1
Query:    1 PERTRAVAIFFRDLASSAAGAVMAVVVLALDTPVLAPLAPA--------APEGGAARPGPRPHEPISGRHMPQIIARPRALLSEPVDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARHRRGWAETTPLG-FR---VVATAALLRPNAFLAASPFAITRCAAVGNSPGVTGRTMYHSEERCAGRLSRQRVAADYHYVLRCTAHRGANDPSCYTVRCRHESFREMRRAGLAEHLREVERIDATRQREAKRKALEAKIAAGVALLEERRARQ-------DALARAGALKEDSGGGGGTEFIGRGXXXXXXXXXXXXXXXXXXWRMRLAASVMLEARGGWERRR---DEGGSIFF 1005
            PE T+ VA+F R+   S++ A++ ++VLALDTP+L+PL  A         PE  AA       E   GR M  +     +LLS  +DS                                   HRRGW+E +    FR   ++     + P   + A   ++T   A  N+PGV GR  +H  +     L R+RV  D  Y+++     G NDP+ ++V   HE+  ++  A L+ +L  V   +A    E K   +E K+ AG   LE +R  Q       +A+A     +   G    TE                       W  R+  S++LE +G WE R    D  G +F+
Sbjct:  515 PEYTKTVAMFERNSKLSSSNAIVVMLVLALDTPILSPLWLAWHVGSKMPPPELEAAVYSLAEAETGFGRVMAFVSPCRGSLLSTRLDSVLDELLPGTITLLNDAAQEEDHWLQLVDHSSSPVGHRRGWSEFSDRHTFRQWLLLTQGRTVTPRYDVVAQYCSVT--IAHPNAPGVCGRYCWHEVDPVEDLLCRRRVEKDLLYIIQNHLTSGPNDPTYFSVVMSHETMADVLGARLSSYLAMVAEREARAAYEKKLYEIEQKLEAGRLALEAKRQEQKRLEQELEAVAAQAEARSKGGVNSATE-----------------DAIAQEWAQRMTQSIVLEQQGLWEMREITVDSSGVVFY 852          
BLAST of mRNA_P-wetherbeei_contig5405.3.1 vs. uniprot
Match: A0A6G0XYL5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYL5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.790e-9
Identity = 77/269 (28.62%), Postives = 118/269 (43.87%), Query Frame = 1
Query:    4 ERTRAVAIFFRDLASSAAGAVMAVVVLALDTPVLAPLAPAAPEGGAARPGPRPHE---PISGRHMPQIIARPRALLSEPVDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARHRRGWAETTPLGFRVVATAALLRPNAFLAASPFAITRCAAVGNSPGVTGRTMYHSEERCAGR-LSRQRVAADYHYVLRCTAHRGANDPSCYTVRCRHESFREMRRAGLAEHLREVERIDATRQREAKRKALEAKIAAGVALLEERRARQDAL 798
            E TR  A++ RD   S+  A++A+VVLALD+PV AP   A   G    P    HE    + G+ +   +   R  +   V SP                                + H   +AE  P+ FR       + PN  + A  + + R     N  G+TGR  +HS+E      L R R+ AD+  +      RG NDP+ YT+  RHE+  ++  +GL  +L   E+I    + +A+   +E K+AAG   L+ +RA +  L
Sbjct:  418 EWTRPTAMYLRDAKISSTNAILALVVLALDSPVKAPTVFAWTPGSVCAP----HELDIVLPGQWIVPRLCVSRFGVLPTVVSPLDDYLPSAICIPNG-----------------CSDHMPDFAEVNPINFRQWLRWTTVLPNFDVDAKAYGLVR--GYPNQTGLTGRFSWHSDEAVVAHDLIRPRLEADFAILAYNRMVRGGNDPNMYTLNMRHETIDKLSTSGLHVYLAAQEKIKEEERLQAQLAEIETKLAAGRLALDAKRAERRRL 663          
BLAST of mRNA_P-wetherbeei_contig5405.3.1 vs. uniprot
Match: H3GZC2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZC2_PHYRM)

HSP 1 Score: 68.2 bits (165), Expect = 8.220e-9
Identity = 101/357 (28.29%), Postives = 147/357 (41.18%), Query Frame = 1
Query:    1 PERTRAVAIFFRDLASSAAGAVMAVVVLALDTPVLAPLAPA--------APEGGAARPGPRPHEPISGRHMPQIIARPRALLSEPVDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARHRRGWAETTPLG-FR---VVATAALLRPNAFLAASPFAITRCAAVGNSPGVTGRTMYHSEERCAGRLSRQRVAADYHYVLRCTAHRGANDPSCYTVRCRHESFREMRRAGLAEHLREVERIDATRQREAKRKALEAKIAAGVALLEERRARQDALARAGAL-------KEDSGGGGGTEFIGRGXXXXXXXXXXXXXXXXXXWRMRLAASVMLEARGGWERR---RDEGGSIFF 1005
            PE T+AVA+F R+ A S++ A++ ++VLALD P+L+P+  A         PE  AA       E   GR M  +     +LLS  ++S                                A  HRRGW+E T    FR   ++     + P   + A   ++T   A  N+PGV GR  +H  +     L R+RV  D  YV++     G NDPS ++V   HES  ++  A L+ +L  V   +A    E K   +E K+ AG   LE +R  Q                +   G    TE                       W  RLA SV+LE +G WE R   +D+   +F+
Sbjct:  883 PEYTKAVALFERNSALSSSNAILVMLVLALDAPILSPMWFAWHVGSKMPPPELEAAVYSLAEAETGFGRVMAFVSPCLGSLLSTRLES-ILDDLLPGTITLFNDVAQEEDHWLDLAEPPSAVGHRRGWSEFTDRHTFRQWLLLTEGRTMAPRYDVVAQYCSVT--IAHPNAPGVCGRYCWHEIDPVEMHLCRRRVEKDLLYVIQNHLTSGPNDPSYFSVALSHESMVDVLGARLSSYLAMVAEREARAAYEKKLHEIEQKLEAGRLALEAKRQEQKRXXXXXXXXXXXXXXRRKGGLNSATE-----------------EAVEQEWAHRLAGSVVLEQQGLWEMREITQDDSAVVFY 1219          
BLAST of mRNA_P-wetherbeei_contig5405.3.1 vs. uniprot
Match: A0A833WPH1_PHYIN (Ankyrin repeats (3 copies) n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WPH1_PHYIN)

HSP 1 Score: 61.6 bits (148), Expect = 1.040e-6
Identity = 93/347 (26.80%), Postives = 140/347 (40.35%), Query Frame = 1
Query:   19 VAIFFRDLASSAAGAVMAVVVLALDTPVLAPLAPA--------APEGGAARPGPRPHEPISGRHMPQIIARPRALLSEPVDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARHRRGWAETTPLG-FR---VVATAALLRPNAFLAASPFAITRCAAVGNSPGVTGRTMYHSEERCAGRLSRQRVAADYHYVLRCTAHRGANDPSCYTVRCRHESFREMRRAGLAEHLREVERIDATRQREAKRKALEAKIAAGVALLEERRARQDALAR---AGALKEDSGGGGGTEFIGRGXXXXXXXXXXXXXXXXXXWRMRLAASVMLEARGGWERRR---DEGGSIFF 1005
            VA+F R+   S++ A++ V+VLALD P+L+P+  A         PE  AA       E   GR M  +     +L S  +DS                                   HRRGW E T    FR   ++     + P   + A   ++T   A  N+PGV GR  +H  +     L R+RV  D  Y+++     G NDPS ++    HE+  ++  A L+ +L  V   +A    E K   +E K+ AG   LE +R  Q  L +   A A + ++   GG                         W  R+A S ++E +G WE R    D  G +F+
Sbjct:  504 VALFERNSKLSSSNAILVVLVLALDAPILSPVWFAWHVGSKMPPPELEAAVFSLAEAETGFGRVMVFVSPCLGSLRSTRLDSVLDELLPGTITLLNDAAEEDDHWLQLVEQSSSPVGHRRGWGEFTDRHTFRQWLLLTQGGTITPRFDVVAQFCSVT--IAHPNAPGVCGRYCWHEVDPVEKLLCRRRVEKDLLYIIQNHLTSGPNDPSYFSALMSHETMADVLGARLSSYLAMVAEREARAAYEKKLYEIEQKLEAGRLALEAKRQEQKRLEQXLEAAAAQAEARSKGGINST-------------TEDAVVQEWAQRMAGSAVVELQGLWEMREITLDSSGVVFY 835          
BLAST of mRNA_P-wetherbeei_contig5405.3.1 vs. uniprot
Match: A0A418B8Q9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B8Q9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.490e-5
Identity = 46/142 (32.39%), Postives = 69/142 (48.59%), Query Frame = 1
Query:  361 AETTPLGFRVVATAALLRPNAFLAASPFAITRCAAVGNSPGVTGRTMYHSEERCAGR-LSRQRVAADYHYVLRCTAHRGANDPSCYTVRCRHESFREMRRAGLAEHLREVERIDATRQREAKRKALEAKIAAGVALLEERRA 783
            +E   L FR       +RPN  L A  + I +     N  G+ GR  +HS+E      L R R+ ADY  + R    RG NDP+ YT+  RHES  ++  +GL   L   E++    + + +   +E K+ AG   L+ +RA
Sbjct:  459 SELNDLNFRQWIRWTTVRPNFDLDAQAYGIVQ--GYSNQTGLNGRFSWHSDEVVDSHTLIRPRLEADYAVLARNRVVRGGNDPNMYTMNMRHESIDKITTSGLRAFLAAQEKVREDERLKHQLLEIETKLQAGRLALDAKRA 598          
BLAST of mRNA_P-wetherbeei_contig5405.3.1 vs. uniprot
Match: A0A067CEL5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CEL5_SAPPC)

HSP 1 Score: 56.6 bits (135), Expect = 4.150e-5
Identity = 95/340 (27.94%), Postives = 133/340 (39.12%), Query Frame = 1
Query:   10 TRAVAIFFRDLASSAAGAVMAVVVLALDTPVLAPLAPAAPEGGAARPGPRPHEPISGRHMPQIIARPRALLSEP-VDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARHRRGWAETTPLGFRVVATAALLRPNAFLAASPFAITRCAAVGNSPGVTGRTMYHSEERC-AGRLSRQRVAADYHYVLRCTAHRGANDPSCYTVRCRHESFREMRRAGLAEHL------REVERIDATRQREAKRKALEAKIAAGVALLEERRARQDALARAGALKEDSGGGGGTEFIGRGXXXXXXXXXXXXXXXXXXWRMRLAASVMLEARGGWERRRDEGGSIFF 1005
            TR  A++ RD   S++  ++  VVLALD+P LAP   A   G  A    R  E +      +I A    LLS P V+SP                                  H     E     FR     A + PN  L A  F I       N  G++GR  +HS++   A  L R R+  DY  V      RG+NDP+ YT+  RHE+   +  +GL   L      RE ER+   + RE + K    ++A      E+RR   DAL +   ++ +  G    +                       WR R+A SV+L    GWE RR +   + F
Sbjct:  415 TRPAAMYLRDARVSSSDTILVHVVLALDSPRLAPRWFAWVPGSVAAAIER--EILFS--FSEIPATTVVLLSPPHVESPLDAYWPSPVLLANGHD-----------------EHAPETPEFNATRFRQWLRYATIPPNFDLHAKAFGIR--GGYLNRTGLSGRFSWHSDDAVDADDLVRVRLEKDYVVVAENKRSRGSNDPNMYTLEMRHEAIESVHTSGLHAFLSAKQKQREEERLQ-QQMREIEVKLQAGRLALDAKRAEKRRLEADALRKKERVQAERDGKAAID-----------------ASTVDEWRDRVAHSVLLREWQGWEERRHDPTHVVF 713          
BLAST of mRNA_P-wetherbeei_contig5405.3.1 vs. uniprot
Match: A0A024UTM4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTM4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.180e-5
Identity = 46/142 (32.39%), Postives = 69/142 (48.59%), Query Frame = 1
Query:  361 AETTPLGFRVVATAALLRPNAFLAASPFAITRCAAVGNSPGVTGRTMYHSEERCAGR-LSRQRVAADYHYVLRCTAHRGANDPSCYTVRCRHESFREMRRAGLAEHLREVERIDATRQREAKRKALEAKIAAGVALLEERRA 783
            +E   L FR       +RPN  L A  + I +     N  G+ GR  +HS+E      L R R+ ADY  + R    RG NDP+ YT+  RHES  ++  +GL   L   E++    + + +   +E K+ AG   L+ +RA
Sbjct:  545 SELNDLNFRQWIRWTTVRPNFDLDAQAYGIVQ--GYSNQTGLNGRFSWHSDEVVDSHTLIRPRLEADYAVLARNRVVRGGNDPNMYTMNMRHESIDKITTSGLRAFLAAQEKVREDERLKHQLLEIETKLQAGRLALDAKRA 684          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5405.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KAT0_9PHAE2.610e-4034.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A329SV37_9STRA7.570e-1128.49Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A0P1AVT9_PLAHL1.800e-1028.41Acyl-CoA-binding protein n=1 Tax=Plasmopara halste... [more]
W2PI59_PHYPN7.740e-1027.17Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A6G0XYL5_9STRA1.790e-928.62Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
H3GZC2_PHYRM8.220e-928.29Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A833WPH1_PHYIN1.040e-626.80Ankyrin repeats (3 copies) n=2 Tax=Phytophthora in... [more]
A0A418B8Q9_9STRA3.490e-532.39Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A067CEL5_SAPPC4.150e-527.94Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A024UTM4_9STRA4.180e-532.39Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5405contigP-wetherbeei_contig5405:2533..3666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LPV0
PFAMsAnk_2
Model size1005
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue5.03e-40
EggNOG OGs2CZ08@1|root,2S7JB@2759|Eukaryota
Ec32 ortholog descriptionAcyl-CoA-binding domain-containing protein 6
Ec32 orthologEc-18_002580.1
DescriptionAnkyrin repeats (many copies)
Cds size1005
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.0679345-CDS-P-wetherbeei_contig5405:2532..27741683186808.0679345-CDS-P-wetherbeei_contig5405:2532..2774Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5405 2533..2774 +
1683186808.0783026-CDS-P-wetherbeei_contig5405:2903..36661683186808.0783026-CDS-P-wetherbeei_contig5405:2903..3666Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5405 2904..3666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5405.3.1prot_P-wetherbeei_contig5405.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5405 2533..3666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5405.3.1

>prot_P-wetherbeei_contig5405.3.1 ID=prot_P-wetherbeei_contig5405.3.1|Name=mRNA_P-wetherbeei_contig5405.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=335bp
PERTRAVAIFFRDLASSAAGAVMAVVVLALDTPVLAPLAPAAPEGGAARP
GPRPHEPISGRHMPQIIARPRALLSEPVDSPATSATASATASATASAVSA
AVTAGVAAARAAAARHRRGWAETTPLGFRVVATAALLRPNAFLAASPFAI
TRCAAVGNSPGVTGRTMYHSEERCAGRLSRQRVAADYHYVLRCTAHRGAN
DPSCYTVRCRHESFREMRRAGLAEHLREVERIDATRQREAKRKALEAKIA
AGVALLEERRARQDALARAGALKEDSGGGGGTEFIGRGSGSGDGMLPPPQ
RKRRDRWRMRLAASVMLEARGGWERRRDEGGSIFF
back to top

mRNA from alignment at P-wetherbeei_contig5405:2533..3666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5405.3.1 ID=mRNA_P-wetherbeei_contig5405.3.1|Name=mRNA_P-wetherbeei_contig5405.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1134bp|location=Sequence derived from alignment at P-wetherbeei_contig5405:2533..3666+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGAACGGACCCGTGCGGTCGCCATCTTCTTCCGGGATCTGGCCTCTAG CGCCGCTGGGGCCGTCATGGCCGTCGTGGTCCTCGCACTGGACACGCCGG TACTGGCACCGCTGGCGCCGGCGGCGCCGGAAGGCGGCGCCGCCCGCCCG GGACCGCGGCCACATGAGCCCATCAGCGGACGCCACATGCCGCAGATCAT TGCGCGACCTCGCGCGCTGCTGTCGGAACCGGTGGACTCGCCGTACGACG CACGCGCCGCGCCGTCCGTCGTCGTGCTGACTGCGGCGGCGACGGAGTGC GACCACCGGCCACCGCTGCCGCAGCAGCAGCAGCACGTGTCGTCAAACGA CGCGACGACACTGACTGTGAGGGCGACGTCGGCGACGGCTTCGGCGACGG CTTCGGCGACGGCTTCGGCGGTATCAGCTGCGGTGACGGCAGGAGTAGCG GCGGCGCGGGCCGCGGCGGCGCGGCATCGCCGCGGCTGGGCCGAAACCAC GCCGTTGGGCTTCCGCGTGGTGGCAACGGCGGCACTGCTGCGCCCCAACG CATTCCTGGCGGCGTCGCCCTTCGCCATTACGCGCTGTGCTGCCGTCGGC AACAGCCCCGGCGTGACCGGCCGCACCATGTACCACAGCGAGGAGCGCTG CGCCGGCCGCCTCTCGCGCCAGCGCGTAGCTGCCGACTACCACTATGTGC TCCGCTGCACAGCGCACCGCGGCGCTAACGACCCATCCTGTTACACGGTC CGCTGCCGCCACGAGTCGTTCCGCGAGATGCGGCGGGCCGGGCTGGCAGA ACATTTGAGAGAGGTGGAGCGGATTGACGCGACGCGGCAGCGCGAGGCGA AGCGCAAGGCGCTCGAAGCGAAGATCGCCGCCGGCGTCGCGCTGTTGGAA GAACGTCGGGCGCGGCAGGACGCGCTGGCGCGGGCGGGGGCGCTAAAAGA AGACAGCGGCGGAGGCGGCGGCACTGAGTTCATCGGCCGCGGGAGTGGAA GTGGTGACGGCATGCTTCCGCCGCCCCAGCGTAAGCGGCGGGACCGCTGG CGCATGCGGCTGGCCGCGTCTGTTATGCTGGAGGCGCGGGGCGGATGGGA ACGCCGGCGCGATGAGGGTGGCAGCATCTTCTTT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5405:2533..3666+

>mRNA_P-wetherbeei_contig5405.3.1 ID=mRNA_P-wetherbeei_contig5405.3.1|Name=mRNA_P-wetherbeei_contig5405.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1005bp|location=Sequence derived from alignment at P-wetherbeei_contig5405:2533..3666+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGAACGGACCCGTGCGGTCGCCATCTTCTTCCGGGATCTGGCCTCTAG
CGCCGCTGGGGCCGTCATGGCCGTCGTGGTCCTCGCACTGGACACGCCGG
TACTGGCACCGCTGGCGCCGGCGGCGCCGGAAGGCGGCGCCGCCCGCCCG
GGACCGCGGCCACATGAGCCCATCAGCGGACGCCACATGCCGCAGATCAT
TGCGCGACCTCGCGCGCTGCTGTCGGAACCGGTGGACTCGCCGGCGACGT
CGGCGACGGCTTCGGCGACGGCTTCGGCGACGGCTTCGGCGGTATCAGCT
GCGGTGACGGCAGGAGTAGCGGCGGCGCGGGCCGCGGCGGCGCGGCATCG
CCGCGGCTGGGCCGAAACCACGCCGTTGGGCTTCCGCGTGGTGGCAACGG
CGGCACTGCTGCGCCCCAACGCATTCCTGGCGGCGTCGCCCTTCGCCATT
ACGCGCTGTGCTGCCGTCGGCAACAGCCCCGGCGTGACCGGCCGCACCAT
GTACCACAGCGAGGAGCGCTGCGCCGGCCGCCTCTCGCGCCAGCGCGTAG
CTGCCGACTACCACTATGTGCTCCGCTGCACAGCGCACCGCGGCGCTAAC
GACCCATCCTGTTACACGGTCCGCTGCCGCCACGAGTCGTTCCGCGAGAT
GCGGCGGGCCGGGCTGGCAGAACATTTGAGAGAGGTGGAGCGGATTGACG
CGACGCGGCAGCGCGAGGCGAAGCGCAAGGCGCTCGAAGCGAAGATCGCC
GCCGGCGTCGCGCTGTTGGAAGAACGTCGGGCGCGGCAGGACGCGCTGGC
GCGGGCGGGGGCGCTAAAAGAAGACAGCGGCGGAGGCGGCGGCACTGAGT
TCATCGGCCGCGGGAGTGGAAGTGGTGACGGCATGCTTCCGCCGCCCCAG
CGTAAGCGGCGGGACCGCTGGCGCATGCGGCTGGCCGCGTCTGTTATGCT
GGAGGCGCGGGGCGGATGGGAACGCCGGCGCGATGAGGGTGGCAGCATCT
TCTTT
back to top