mRNA_P-wetherbeei_contig54.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54.6.1
Unique NamemRNA_P-wetherbeei_contig54.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54.6.1 vs. uniprot
Match: UPI00142D5125 (uncharacterized protein LOC103851799 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D5125)

HSP 1 Score: 59.3 bits (142), Expect = 1.960e-6
Identity = 31/89 (34.83%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:  160 RGQTPYDALHGHPPSTADFRPFGSGAYVHLLPHQRPAGGKFTQRAVMGVMMGCCSNGAGWRIYMLAARKVVTSSQVHFDEDVFPSTSLA 426
            + +TP++ LHG PP+ +  R  G  AY H   ++   G KF  R+   +++G  S   GW+++ L    V  S  V F EDVFP  + A
Sbjct:  696 KNKTPFELLHGQPPTISHLRVLGCLAYAH---NKNTKGDKFAPRSRRCILIGYPSGTKGWKLFDLEQETVFISRDVTFQEDVFPYDNKA 781
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BLAST of mRNA_P-wetherbeei_contig54.6.1 vs. uniprot
Match: Q55IK1_CRYNB (Integrase catalytic domain-containing protein n=2 Tax=Cryptococcus neoformans TaxID=5207 RepID=Q55IK1_CRYNB)

HSP 1 Score: 57.8 bits (138), Expect = 6.430e-6
Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 1 
Query:  169 TPYDALHGHPPSTADFRPFGSGAYVHLLPHQRPAGGKFTQRAVMGVMMGCCSNGAGWRIYMLAARKVVTSSQVHFDEDVFPSTS 420
            TPY  LH  PP+ A  R  G  A+V L  H+RP   K   RA +  M+G       +R++  AAR++V S  V FDE  FP  S
Sbjct:  656 TPYQILHARPPNLAHLRVIGCAAWVLLPKHKRPH--KLAPRAYLCCMLGYSLEQKAYRLWDPAARQLVISRDVVFDETQFPFAS 737
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00142D51251.960e-634.83uncharacterized protein LOC103851799 isoform X1 n=... [more]
Q55IK1_CRYNB6.430e-640.48Integrase catalytic domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54contigP-wetherbeei_contig54:8208..8948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog90675.XP_010436828.1
Preferred nameVCX1
PFAMsNa_Ca_ex
Model size741
Max annot lvl2759|Eukaryota
KEGG koko:K07300,ko:K08286,ko:K11699,ko:K12619,ko:K20404
KEGG TC2.A.19
KEGG Pathwayko03008,ko03018,ko04150,map03008,map03018,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005451,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0007034,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015079,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015368,GO:0015369,GO:0015386,GO:0015491,GO:0015672,GO:0016020,GO:0016021,GO:0019725,GO:0022804,GO:0022821,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031090,GO:0031224,GO:0034220,GO:0034486,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0048878,GO:0050801,GO:0051139,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060401,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071804,GO:0071805,GO:0072503,GO:0072507,GO:0072511,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0098852,GO:0099516,GO:0140146,GO:1901660,GO:1902600
Exons1
Evalue1.21e-08
EggNOG OGsCOG0387@1|root,COG2801@1|root,KOG0017@2759|Eukaryota,KOG1397@2759|Eukaryota
EC2.7.7.48
Descriptioncalcium:proton antiporter activity
Cds size576
COG categoryP
BRITEko00000,ko00001,ko01000,ko02000,ko03009,ko03016,ko03019,ko03021,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.8997605-UTR-P-wetherbeei_contig54:8207..82941683186806.8997605-UTR-P-wetherbeei_contig54:8207..8294Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54 8208..8294 -
1683186806.9232733-UTR-P-wetherbeei_contig54:8870..89481683186806.9232733-UTR-P-wetherbeei_contig54:8870..8948Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54 8871..8948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.9129984-CDS-P-wetherbeei_contig54:8294..88701683186806.9129984-CDS-P-wetherbeei_contig54:8294..8870Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54 8295..8870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54.6.1prot_P-wetherbeei_contig54.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54 8295..8870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54.6.1

>prot_P-wetherbeei_contig54.6.1 ID=prot_P-wetherbeei_contig54.6.1|Name=mRNA_P-wetherbeei_contig54.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=192bp
MSRSVSEWKHPIAPSTSSAGAASRRCPRGQTPYDALHGHPPSTADFRPFG
SGAYVHLLPHQRPAGGKFTQRAVMGVMMGCCSNGAGWRIYMLAARKVVTS
SQVHFDEDVFPSTSLAGAGTAAGDDAIVPWPEVKNITAAAGGGGDVAPSE
ASIADAATDGPAGAEEAGATAGAGGGGNDGGRRRRRQRRQR*
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mRNA from alignment at P-wetherbeei_contig54:8208..8948-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54.6.1 ID=mRNA_P-wetherbeei_contig54.6.1|Name=mRNA_P-wetherbeei_contig54.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=741bp|location=Sequence derived from alignment at P-wetherbeei_contig54:8208..8948- (Phaeothamnion wetherbeei SAG_119_79)
CACCCGAGTTCATGGGGAAAGCGGAGCGCGGCTGGGGCGTTATCGGCAGC
ACAACTCGTGCTTTCCTGGCCGCTTCCAATGTCGAGAAGTGTTTCTGAAT
GGAAGCATCCCATTGCGCCGTCCACCTCGTCAGCCGGCGCGGCATCAAGG
CGCTGCCCCCGTGGCCAGACGCCATACGACGCCCTACACGGCCACCCGCC
TTCGACGGCTGACTTTCGACCTTTCGGGTCAGGAGCCTACGTGCACCTCC
TGCCGCACCAGCGGCCCGCCGGTGGCAAGTTTACTCAGCGTGCCGTCATG
GGCGTGATGATGGGGTGCTGCTCGAACGGGGCGGGCTGGCGGATCTACAT
GCTGGCGGCGAGAAAGGTAGTGACGTCCAGCCAGGTCCATTTCGACGAGG
ACGTCTTCCCCTCCACCAGCCTAGCAGGCGCTGGGACGGCCGCTGGAGAT
GACGCCATCGTCCCGTGGCCGGAAGTGAAAAACATTACTGCTGCTGCAGG
TGGAGGCGGCGACGTCGCTCCTTCCGAAGCCTCGATTGCAGACGCTGCGA
CAGATGGTCCGGCAGGAGCCGAGGAAGCTGGCGCGACGGCGGGCGCAGGA
GGCGGCGGCAACGACGGCGGGCGCAGGAGGCGGCGGCAACGACGGCAACG
GTGATGGTGGCGGCGGCGGCGGCACTGATGGGGGCGACGGCTACGGTGCT
GGTGGCGGTGGCAGCGGGGCCGTTAATGCAAGCGCCGCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54:8208..8948-

>mRNA_P-wetherbeei_contig54.6.1 ID=mRNA_P-wetherbeei_contig54.6.1|Name=mRNA_P-wetherbeei_contig54.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig54:8208..8948- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGAGAAGTGTTTCTGAATGGAAGCATCCCATTGCGCCGTCCACCTC
GTCAGCCGGCGCGGCATCAAGGCGCTGCCCCCGTGGCCAGACGCCATACG
ACGCCCTACACGGCCACCCGCCTTCGACGGCTGACTTTCGACCTTTCGGG
TCAGGAGCCTACGTGCACCTCCTGCCGCACCAGCGGCCCGCCGGTGGCAA
GTTTACTCAGCGTGCCGTCATGGGCGTGATGATGGGGTGCTGCTCGAACG
GGGCGGGCTGGCGGATCTACATGCTGGCGGCGAGAAAGGTAGTGACGTCC
AGCCAGGTCCATTTCGACGAGGACGTCTTCCCCTCCACCAGCCTAGCAGG
CGCTGGGACGGCCGCTGGAGATGACGCCATCGTCCCGTGGCCGGAAGTGA
AAAACATTACTGCTGCTGCAGGTGGAGGCGGCGACGTCGCTCCTTCCGAA
GCCTCGATTGCAGACGCTGCGACAGATGGTCCGGCAGGAGCCGAGGAAGC
TGGCGCGACGGCGGGCGCAGGAGGCGGCGGCAACGACGGCGGGCGCAGGA
GGCGGCGGCAACGACGGCAACGGTGA
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