mRNA_P-wetherbeei_contig53877.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53877.1.1
Unique NamemRNA_P-wetherbeei_contig53877.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53877.1.1 vs. uniprot
Match: D1J713_ECTSI (Replicative DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J713_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 2.810e-102
Identity = 163/177 (92.09%), Postives = 176/177 (99.44%), Query Frame = 1
Query:    1 LPYNLLAEKLVLGSILTMPEAILLVSEKLPIEAFYLDTHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILLELLNQINRVSNLDEYIALIYEKYLRRALIKLGEEMIEDGYLTEIPLETIFTKIEQKFFLLSENKSKQHLISVEQGLQQIIKEIEEGLRVPRLPGLK 531
            LPYNLLAEKLVLGSILT+PEAILLVSEKLPIEAFYL+THQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILL+LLNQINR+++LDEYIALIYEKYLRR+LIKLGEE+IE+GYLTEIPLETIFTK+EQ FFLLSENKSKQHLISVE+GLQQI+KEIEEGLR+PRLPGLK
Sbjct:   13 LPYNLLAEKLVLGSILTIPEAILLVSEKLPIEAFYLETHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILLDLLNQINRLTDLDEYIALIYEKYLRRSLIKLGEELIENGYLTEIPLETIFTKLEQSFFLLSENKSKQHLISVEEGLQQIVKEIEEGLRIPRLPGLK 189          
BLAST of mRNA_P-wetherbeei_contig53877.1.1 vs. uniprot
Match: A0A344PF29_9PHAE (Replicative DNA helicase n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PF29_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 1.030e-101
Identity = 164/177 (92.66%), Postives = 174/177 (98.31%), Query Frame = 1
Query:    1 LPYNLLAEKLVLGSILTMPEAILLVSEKLPIEAFYLDTHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILLELLNQINRVSNLDEYIALIYEKYLRRALIKLGEEMIEDGYLTEIPLETIFTKIEQKFFLLSENKSKQHLISVEQGLQQIIKEIEEGLRVPRLPGLK 531
            LPYNLLAEKLVLGSILT+PE ILLVSEKLPIEAFYLD HQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILL+LLNQINR++NL+EYIALIYEKYLRR+LIKLGEE+IE+GYLTEIPLETIFTKIEQ FFLLSENKS+QHLISVEQGLQQI+KEIEEGLRVPRLPGLK
Sbjct:   13 LPYNLLAEKLVLGSILTIPEVILLVSEKLPIEAFYLDRHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILLDLLNQINRLTNLEEYIALIYEKYLRRSLIKLGEEIIENGYLTEIPLETIFTKIEQSFFLLSENKSRQHLISVEQGLQQILKEIEEGLRVPRLPGLK 189          
BLAST of mRNA_P-wetherbeei_contig53877.1.1 vs. uniprot
Match: A0A6B7EUP7_9PHAE (Replicative DNA helicase n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUP7_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 3.280e-100
Identity = 162/177 (91.53%), Postives = 171/177 (96.61%), Query Frame = 1
Query:    1 LPYNLLAEKLVLGSILTMPEAILLVSEKLPIEAFYLDTHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILLELLNQINRVSNLDEYIALIYEKYLRRALIKLGEEMIEDGYLTEIPLETIFTKIEQKFFLLSENKSKQHLISVEQGLQQIIKEIEEGLRVPRLPGLK 531
            LPYNLLAEKLVLGSILTMPE ILLVSEKLPIEAFYLD HQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGAN+LL+LLNQ+NRV+NL+EYI+LIYEKYLRR+LIKLGEE+IEDGYLTEIPLE IFTKIEQ FFLLSENKS+QHLISV  GLQQIIKEIEEGLRVPRLPGLK
Sbjct:   13 LPYNLLAEKLVLGSILTMPEVILLVSEKLPIEAFYLDKHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANLLLDLLNQMNRVTNLEEYISLIYEKYLRRSLIKLGEEIIEDGYLTEIPLEIIFTKIEQNFFLLSENKSRQHLISVNDGLQQIIKEIEEGLRVPRLPGLK 189          
BLAST of mRNA_P-wetherbeei_contig53877.1.1 vs. uniprot
Match: A0A8F0JYE4_9PHAE (Replicative DNA helicase n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JYE4_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 1.690e-94
Identity = 153/177 (86.44%), Postives = 169/177 (95.48%), Query Frame = 1
Query:    1 LPYNLLAEKLVLGSILTMPEAILLVSEKLPIEAFYLDTHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILLELLNQINRVSNLDEYIALIYEKYLRRALIKLGEEMIEDGYLTEIPLETIFTKIEQKFFLLSENKSKQHLISVEQGLQQIIKEIEEGLRVPRLPGLK 531
            LPYNLLAEKLVLGSILT+PEAIL+VSEKLPIEAFYL+THQIIYKALL+LYAEGKTIDYI LITWIQDNG L+KIGGA +LL+LL+Q+N++SNL+EYIALIYEKYLRR+LIKLGEE+IE GYLTEIPLETIFTKIEQ FFLLSE KSK+HLISVEQGLQQI+KEIEEGLR  RLPGLK
Sbjct:   13 LPYNLLAEKLVLGSILTIPEAILVVSEKLPIEAFYLNTHQIIYKALLVLYAEGKTIDYITLITWIQDNGLLVKIGGARVLLDLLSQLNKLSNLEEYIALIYEKYLRRSLIKLGEEIIESGYLTEIPLETIFTKIEQSFFLLSETKSKRHLISVEQGLQQILKEIEEGLRTTRLPGLK 189          
BLAST of mRNA_P-wetherbeei_contig53877.1.1 vs. uniprot
Match: A0A1I9LVP9_9PHAE (Replicative DNA helicase n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVP9_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 1.990e-94
Identity = 156/177 (88.14%), Postives = 168/177 (94.92%), Query Frame = 1
Query:    1 LPYNLLAEKLVLGSILTMPEAILLVSEKLPIEAFYLDTHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILLELLNQINRVSNLDEYIALIYEKYLRRALIKLGEEMIEDGYLTEIPLETIFTKIEQKFFLLSENKSKQHLISVEQGLQQIIKEIEEGLRVPRLPGLK 531
            LPYNLLAEKLVLGSILT+PEAILLVSEKLPIEAFYL+ HQIIYKALLILYAE K IDYI+LITWIQDNGFL KIGGANILL+LLNQI RV+NL+EYIALIYEKYLRRALIKLGEE+IE+ YLTEIPLETIFTK+E  FFLLSENKS+QHLISVEQGLQQI+KEIEEGL+V RLPGLK
Sbjct:    8 LPYNLLAEKLVLGSILTIPEAILLVSEKLPIEAFYLNRHQIIYKALLILYAEEKPIDYIHLITWIQDNGFLSKIGGANILLDLLNQITRVTNLEEYIALIYEKYLRRALIKLGEELIENAYLTEIPLETIFTKLEHSFFLLSENKSRQHLISVEQGLQQILKEIEEGLKVSRLPGLK 184          
BLAST of mRNA_P-wetherbeei_contig53877.1.1 vs. uniprot
Match: A0A8F0FB27_9PHAE (Replicative DNA helicase n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB27_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 1.310e-93
Identity = 152/177 (85.88%), Postives = 168/177 (94.92%), Query Frame = 1
Query:    1 LPYNLLAEKLVLGSILTMPEAILLVSEKLPIEAFYLDTHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILLELLNQINRVSNLDEYIALIYEKYLRRALIKLGEEMIEDGYLTEIPLETIFTKIEQKFFLLSENKSKQHLISVEQGLQQIIKEIEEGLRVPRLPGLK 531
            LPYNLLAEKLVLGSILT+PEAILLVSEKLPIEAFYL  HQIIYKALLILYAEG+TIDYINLITWIQDNGFL KIGGA++LL+LLNQIN+ SNL+EYIALIYEKYLRR+LIKLGEE+IE GYLTEIPLETIF KIEQ FFLLSE KS ++LISVEQGLQQ++KEIE+GL+VP+LPGLK
Sbjct:   13 LPYNLLAEKLVLGSILTIPEAILLVSEKLPIEAFYLQNHQIIYKALLILYAEGRTIDYINLITWIQDNGFLTKIGGAHVLLDLLNQINKTSNLEEYIALIYEKYLRRSLIKLGEEIIESGYLTEIPLETIFAKIEQSFFLLSETKSTKNLISVEQGLQQVLKEIEKGLKVPQLPGLK 189          
BLAST of mRNA_P-wetherbeei_contig53877.1.1 vs. uniprot
Match: A0A140G1D3_UNDPI (Replicative DNA helicase n=30 Tax=Laminariales TaxID=2886 RepID=A0A140G1D3_UNDPI)

HSP 1 Score: 290 bits (743), Expect = 5.470e-93
Identity = 148/177 (83.62%), Postives = 169/177 (95.48%), Query Frame = 1
Query:    1 LPYNLLAEKLVLGSILTMPEAILLVSEKLPIEAFYLDTHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILLELLNQINRVSNLDEYIALIYEKYLRRALIKLGEEMIEDGYLTEIPLETIFTKIEQKFFLLSENKSKQHLISVEQGLQQIIKEIEEGLRVPRLPGLK 531
            LPYNLLAEKLVLGSILT+PEAILLVSEKLPIEAFYL THQIIYKALLILYAEGKTIDYINLITW QDNGFLLKIGGA++++ LLNQ++ +SNL+EYIALIYEKYLRR+LI+LGEE+IE GYLTEIPLE IFTKIEQ FFL+SE KSK+H+ISV++GLQQ++KEIEEGLR+P+LPGLK
Sbjct:   15 LPYNLLAEKLVLGSILTIPEAILLVSEKLPIEAFYLKTHQIIYKALLILYAEGKTIDYINLITWTQDNGFLLKIGGAHVIINLLNQMHTLSNLEEYIALIYEKYLRRSLIELGEEIIESGYLTEIPLEIIFTKIEQSFFLISETKSKKHMISVQEGLQQVLKEIEEGLRIPKLPGLK 191          
BLAST of mRNA_P-wetherbeei_contig53877.1.1 vs. uniprot
Match: D1GJP3_FUCVE (Replicative DNA helicase n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJP3_FUCVE)

HSP 1 Score: 284 bits (727), Expect = 1.330e-90
Identity = 149/177 (84.18%), Postives = 165/177 (93.22%), Query Frame = 1
Query:    1 LPYNLLAEKLVLGSILTMPEAILLVSEKLPIEAFYLDTHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILLELLNQINRVSNLDEYIALIYEKYLRRALIKLGEEMIEDGYLTEIPLETIFTKIEQKFFLLSENKSKQHLISVEQGLQQIIKEIEEGLRVPRLPGLK 531
            LPYNLLAEKLVL SILT+PEAILLVSEKLPI+AFYL+THQIIYKALLILYAEGKTIDYINLITWIQD+GFL KIGG++ILLELLNQIN  SNLDEYI LIYEKYLRR+LIKLGEE+IE GYLT+IPLETIF KIEQ FF L +NKS +HLISVEQGLQQII+EIE+GL++P+ PGLK
Sbjct:   13 LPYNLLAEKLVLSSILTIPEAILLVSEKLPIDAFYLETHQIIYKALLILYAEGKTIDYINLITWIQDHGFLSKIGGSHILLELLNQINNGSNLDEYIGLIYEKYLRRSLIKLGEEIIESGYLTDIPLETIFAKIEQSFFNLIDNKSTKHLISVEQGLQQIIREIEQGLKIPQTPGLK 189          
BLAST of mRNA_P-wetherbeei_contig53877.1.1 vs. uniprot
Match: A0A8F0F9P7_9PHAE (Replicative DNA helicase n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9P7_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 8.080e-89
Identity = 145/177 (81.92%), Postives = 168/177 (94.92%), Query Frame = 1
Query:    1 LPYNLLAEKLVLGSILTMPEAILLVSEKLPIEAFYLDTHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILLELLNQINRVSNLDEYIALIYEKYLRRALIKLGEEMIEDGYLTEIPLETIFTKIEQKFFLLSENKSKQHLISVEQGLQQIIKEIEEGLRVPRLPGLK 531
            LPYNLLAEKLVLGSILT+PEAIL+VSEKLPIEAFYL+THQIIYKALLILYAEGKTIDYINLIT +QD+G LLKIGGAN++L LLNQI+ +SNL+EYI LIYEK+LRR+LI+LGEE+IE GYLT+IPLETIFTKIEQ FFLLS+ KS+++L SVEQG+QQI+KE+EEGLR+PRLPGLK
Sbjct:   13 LPYNLLAEKLVLGSILTIPEAILVVSEKLPIEAFYLETHQIIYKALLILYAEGKTIDYINLITSLQDSGVLLKIGGANLILNLLNQISNLSNLEEYIGLIYEKHLRRSLIRLGEEIIETGYLTQIPLETIFTKIEQSFFLLSQTKSRKNLTSVEQGMQQILKEMEEGLRIPRLPGLK 189          
BLAST of mRNA_P-wetherbeei_contig53877.1.1 vs. uniprot
Match: A0A8E5XRG8_9PHAE (DNA replication helicase n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRG8_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 4.160e-86
Identity = 136/177 (76.84%), Postives = 166/177 (93.79%), Query Frame = 1
Query:    1 LPYNLLAEKLVLGSILTMPEAILLVSEKLPIEAFYLDTHQIIYKALLILYAEGKTIDYINLITWIQDNGFLLKIGGANILLELLNQINRVSNLDEYIALIYEKYLRRALIKLGEEMIEDGYLTEIPLETIFTKIEQKFFLLSENKSKQHLISVEQGLQQIIKEIEEGLRVPRLPGLK 531
            LPYNLLAEKLVLGSILT+P+AI+L SEKLPIEAFYL +HQIIYKALL+LYAEGKTIDYINLITW+QDNG L++IGG  +LL+LL+Q+N+ SNL+EYIALIYEKY+RRALIKLGEEMIE GYLT+IPLETIFTK+E+KFFL++E K  ++L+SVE+GL QI++EIEEGL++P++PGLK
Sbjct:   13 LPYNLLAEKLVLGSILTIPQAIVLASEKLPIEAFYLQSHQIIYKALLLLYAEGKTIDYINLITWLQDNGLLMQIGGTQVLLDLLSQLNQSSNLEEYIALIYEKYIRRALIKLGEEMIESGYLTKIPLETIFTKLERKFFLIAEEKPMKYLVSVEEGLHQILQEIEEGLKLPQVPGLK 189          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53877.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J713_ECTSI2.810e-10292.09Replicative DNA helicase n=2 Tax=Ectocarpus silicu... [more]
A0A344PF29_9PHAE1.030e-10192.66Replicative DNA helicase n=4 Tax=Scytosiphonaceae ... [more]
A0A6B7EUP7_9PHAE3.280e-10091.53Replicative DNA helicase n=1 Tax=Cladosiphon okamu... [more]
A0A8F0JYE4_9PHAE1.690e-9486.44Replicative DNA helicase n=2 Tax=Laminariales TaxI... [more]
A0A1I9LVP9_9PHAE1.990e-9488.14Replicative DNA helicase n=1 Tax=Pleurocladia lacu... [more]
A0A8F0FB27_9PHAE1.310e-9385.88Replicative DNA helicase n=1 Tax=Desmarestia acule... [more]
A0A140G1D3_UNDPI5.470e-9383.62Replicative DNA helicase n=30 Tax=Laminariales Tax... [more]
D1GJP3_FUCVE1.330e-9084.18Replicative DNA helicase n=3 Tax=Fucaceae TaxID=30... [more]
A0A8F0F9P7_9PHAE8.080e-8981.92Replicative DNA helicase n=1 Tax=Chorda asiatica T... [more]
A0A8E5XRG8_9PHAE4.160e-8676.84DNA replication helicase n=1 Tax=Ishige okamurae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53877contigP-wetherbeei_contig53877:3..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D1J713
Preferred namednaB
PFAMsDnaB,DnaB_C
Model size531
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons1
Evalue4.61e-103
EggNOG OGsCOG0305@1|root,2QRXQ@2759|Eukaryota
DescriptionDnaB-like helicase C terminal domain
Cds size531
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186805.2711983-CDS-P-wetherbeei_contig53877:2..5331683186805.2711983-CDS-P-wetherbeei_contig53877:2..533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53877 3..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53877.1.1prot_P-wetherbeei_contig53877.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53877 3..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53877.1.1

>prot_P-wetherbeei_contig53877.1.1 ID=prot_P-wetherbeei_contig53877.1.1|Name=mRNA_P-wetherbeei_contig53877.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
LPYNLLAEKLVLGSILTMPEAILLVSEKLPIEAFYLDTHQIIYKALLILY
AEGKTIDYINLITWIQDNGFLLKIGGANILLELLNQINRVSNLDEYIALI
YEKYLRRALIKLGEEMIEDGYLTEIPLETIFTKIEQKFFLLSENKSKQHL
ISVEQGLQQIIKEIEEGLRVPRLPGLK
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mRNA from alignment at P-wetherbeei_contig53877:3..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53877.1.1 ID=mRNA_P-wetherbeei_contig53877.1.1|Name=mRNA_P-wetherbeei_contig53877.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig53877:3..533- (Phaeothamnion wetherbeei SAG_119_79)
CTCCCATATAACCTATTAGCTGAGAAACTAGTCTTAGGTAGCATTTTGAC AATGCCTGAGGCAATCTTATTAGTTAGTGAAAAATTACCAATTGAAGCTT TCTATTTAGATACGCACCAAATTATTTATAAAGCTTTGTTAATACTCTAT GCAGAAGGGAAAACAATTGATTATATAAATTTAATTACATGGATACAAGA TAATGGTTTTTTATTAAAGATTGGAGGCGCAAATATTCTTCTTGAGCTTT TAAACCAAATAAATAGGGTAAGTAATCTTGATGAATACATAGCATTAATT TATGAAAAATATTTAAGAAGAGCACTAATTAAACTTGGTGAGGAAATGAT TGAAGATGGTTATTTAACTGAAATACCCTTAGAAACTATTTTTACAAAAA TTGAGCAAAAATTTTTTCTTTTATCAGAAAATAAATCAAAGCAACATCTT ATAAGTGTAGAACAAGGTTTACAACAAATTATAAAAGAAATTGAAGAAGG TCTAAGAGTACCACGCTTGCCTGGTTTGAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53877:3..533-

>mRNA_P-wetherbeei_contig53877.1.1 ID=mRNA_P-wetherbeei_contig53877.1.1|Name=mRNA_P-wetherbeei_contig53877.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig53877:3..533- (Phaeothamnion wetherbeei SAG_119_79)
CTCCCATATAACCTATTAGCTGAGAAACTAGTCTTAGGTAGCATTTTGAC
AATGCCTGAGGCAATCTTATTAGTTAGTGAAAAATTACCAATTGAAGCTT
TCTATTTAGATACGCACCAAATTATTTATAAAGCTTTGTTAATACTCTAT
GCAGAAGGGAAAACAATTGATTATATAAATTTAATTACATGGATACAAGA
TAATGGTTTTTTATTAAAGATTGGAGGCGCAAATATTCTTCTTGAGCTTT
TAAACCAAATAAATAGGGTAAGTAATCTTGATGAATACATAGCATTAATT
TATGAAAAATATTTAAGAAGAGCACTAATTAAACTTGGTGAGGAAATGAT
TGAAGATGGTTATTTAACTGAAATACCCTTAGAAACTATTTTTACAAAAA
TTGAGCAAAAATTTTTTCTTTTATCAGAAAATAAATCAAAGCAACATCTT
ATAAGTGTAGAACAAGGTTTACAACAAATTATAAAAGAAATTGAAGAAGG
TCTAAGAGTACCACGCTTGCCTGGTTTGAAA
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