mRNA_P-wetherbeei_contig538.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig538.1.1
Unique NamemRNA_P-wetherbeei_contig538.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig538.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig538contigP-wetherbeei_contig538:87..1548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size397
Hectar predicted targeting categoryother localisation
Exons3
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186804.2753177-CDS-P-wetherbeei_contig538:86..1481683186804.2753177-CDS-P-wetherbeei_contig538:86..148Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig538 87..148 +
1683186804.2876203-CDS-P-wetherbeei_contig538:314..5971683186804.2876203-CDS-P-wetherbeei_contig538:314..597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig538 315..597 +
1683186804.2971835-CDS-P-wetherbeei_contig538:1496..15471683186804.2971835-CDS-P-wetherbeei_contig538:1496..1547Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig538 1497..1547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig538.1.1prot_P-wetherbeei_contig538.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig538 87..1547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig538.1.1

>prot_P-wetherbeei_contig538.1.1 ID=prot_P-wetherbeei_contig538.1.1|Name=mRNA_P-wetherbeei_contig538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
AHRLHTSRDLHTLDMLIDRHNSHLCNIAAELGIEMTSADLAQVLVRPVEQ
AHQSGTVAAGMAGTAVAGESGRSPGKIIEQHHGLFASRRSARESGADLSS
VEQSRGPLTLRFGFSAAALFSGQRDPAFRQWR
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mRNA from alignment at P-wetherbeei_contig538:87..1548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig538.1.1 ID=mRNA_P-wetherbeei_contig538.1.1|Name=mRNA_P-wetherbeei_contig538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1462bp|location=Sequence derived from alignment at P-wetherbeei_contig538:87..1548+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCACCGGCTGCACACCTCGCGGGACCTGCACACGCTCGACATGCTGAT
CGACCGCCACAAGTGAGGTTACCCGGAATGGCGCACATTAGAGTCTGCTT
TGCATGGAAGCAGCAAAGTTTCGTAAATGGACTGGGGCCGAACCCGTAGA
GGCCGCGTTTGACCTTGTTTCAGTTTCTGGTTGTTCTAAATGCCGTCTTT
TTTCTTTCCGTTCTCCCTGTCCTCGCAGTTCGCACCTGTGCAACATCGCG
GCCGAGCTGGGCATCGAGATGACGTCGGCGGACCTCGCACAGGTCCTCGT
CAGGCCGGTCGAGCAGGCGCATCAGAGCGGAACGGTGGCAGCGGGGATGG
CGGGGACGGCCGTGGCGGGGGAATCGGGGCGTTCTCCTGGCAAGATCATC
GAGCAGCATCACGGCCTTTTTGCAAGTCGCCGGTCCGCTCGCGAGAGCGG
TGCGGATCTTTCGTCCGTGGAGCAGTCCAGGGGCCCTCTAACTTTGCGCT
TTGGCTTCAGTGCCGGCGGCAGCGGCGGCGGCAGCGCCGGCGGCGGCGGT
GACCTTGGCGGCGGCGGCGGCGGCGCTGGCCGTGGAACCAGCGCCAGCCC
GCGCCTTCACCATGACACCGCCCGCTACGACGAGCTCGGCACGGACGTGG
GCGGACACCGGCTGGAGAGGGCGTTCTCCACGGGCTCGCTGCCGCCGGCC
TCTGCCGTTACACAGTCCGCGGCGCCGTCGTCCGCCGGGCCAGCGGTGCT
GGAGGACATGCGGTCGTGGCCGCCGCTGCACGGTGGGACGCGTGACCTGG
CGACCCGCTACCCGCCGGGCGCATTTTTCGCTCCATCGGCCCCTGCGCTG
GACCCAAGCCCCGGCCACGGCGGCGGTTCTGCGCAGGGCGATGGCAGTGG
CAGTGGGACGGCCCAGTCCTCGTCGCCAAGGCTCGCGCCCCCTCGCCCGT
TCTGGTCCTACCCGCCGCCGACGTCGCACAGCCCCGCGAACTTCGGCGTC
GGTGGCAGCGGCATTGCGCAGGCGGGCGCGAGCGGCTTCGGGGACGCTGG
GGCGCCTGTCGGCGGTGGCGGTGCCGTCGCCGGCGGCGGCGGCGGCGCCG
CCTGTGGCAGCTTTTCCTCTAGCGGACAGCAGTACCAGCAGCAGCAGCAG
CAGCAGCAGCACCCGCTCCTGCAGCAGCAGCAACAGCAGCACCCGCTCCT
GCAGCAACAGCAGCAGCTGCACCAGCTGCAGCAGCACCAAGAGCAGCAGC
AGCAACAGCACCCACTGCTCCAGCAGCACCAGCAGATGCTGCTGCACCAG
CAAATGTACCAGCCCTTCGCGCCGCTCGGGTCGCCGCCGCCACCGCCGCC
GCCGCCACCGCCGCCGCCGCCGCCGTTCGTCCAGCTGGTCATGCCGTCGC
GGCCGCTGCCGCCGCCGCTCTTTTTTCCGGCCAGCGGGATCCAGCGTTTC
GGCAGTGGAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig538:87..1548+

>mRNA_P-wetherbeei_contig538.1.1 ID=mRNA_P-wetherbeei_contig538.1.1|Name=mRNA_P-wetherbeei_contig538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig538:87..1548+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCACCGGCTGCACACCTCGCGGGACCTGCACACGCTCGACATGCTGAT
CGACCGCCACAATTCGCACCTGTGCAACATCGCGGCCGAGCTGGGCATCG
AGATGACGTCGGCGGACCTCGCACAGGTCCTCGTCAGGCCGGTCGAGCAG
GCGCATCAGAGCGGAACGGTGGCAGCGGGGATGGCGGGGACGGCCGTGGC
GGGGGAATCGGGGCGTTCTCCTGGCAAGATCATCGAGCAGCATCACGGCC
TTTTTGCAAGTCGCCGGTCCGCTCGCGAGAGCGGTGCGGATCTTTCGTCC
GTGGAGCAGTCCAGGGGCCCTCTAACTTTGCGCTTTGGCTTCAGTGCCGC
CGCTCTTTTTTCCGGCCAGCGGGATCCAGCGTTTCGGCAGTGGAGA
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