mRNA_P-wetherbeei_contig53658.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53658.1.1
Unique NamemRNA_P-wetherbeei_contig53658.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53658.1.1 vs. uniprot
Match: A0A7Y4V881_9BACT (Class I SAM-dependent RNA methyltransferase n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4V881_9BACT)

HSP 1 Score: 266 bits (680), Expect = 9.110e-86
Identity = 126/178 (70.79%), Postives = 151/178 (84.83%), Query Frame = 1 
Query:    1 YPWEKIISINEYFSVTSHVDHPSVNNTMFSNVKVKDAIADRIRRETAKRPDSGSAMDGAVINLYWWELDAEVXLDTSGETLSKHGYRKVPGKAPMLEALASATILASKWDRQSPFVNPMCGSGTVAIEAVLMATNRRPGLIRKNYSFMHVIGYDEQHYQDQLELLNRKIKDVAGLKVI 534
            YPWE I+S   YFSVT++ +H +VN+ MF NVKVKDAI DR+RRE  KRPDSGS +DGAVINLYW +  AEV LDTSGETL+KHGYRK+PG+APMLEALA ATI+A+KWDR+SPFVNPMCGS TVAIEA+L+ATNRRPGL+R+NYSFMHV+GYD   YQ +L+ L  ++ DV GLK+I
Sbjct:   85 YPWETILSPEGYFSVTNNSNHFTVNSEMFVNVKVKDAIVDRMRREVLKRPDSGSVLDGAVINLYWNDQQAEVFLDTSGETLAKHGYRKIPGQAPMLEALAVATIMATKWDRKSPFVNPMCGSSTVAIEAILLATNRRPGLLRENYSFMHVLGYDATVYQTELQKLKEQVVDVPGLKMI 262
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BLAST of mRNA_P-wetherbeei_contig53658.1.1 vs. uniprot
Match: UPI0019DCEA8D (RNA methyltransferase n=1 Tax=Cytophagales bacterium WSM2-2 TaxID=2774202 RepID=UPI0019DCEA8D)

HSP 1 Score: 263 bits (671), Expect = 1.750e-84
Identity = 124/176 (70.45%), Postives = 149/176 (84.66%), Query Frame = 1 
Query:    7 WEKIISINEYFSVTSHVDHPSVNNTMFSNVKVKDAIADRIRRETAKRPDSGSAMDGAVINLYWWELDAEVXLDTSGETLSKHGYRKVPGKAPMLEALASATILASKWDRQSPFVNPMCGSGTVAIEAVLMATNRRPGLIRKNYSFMHVIGYDEQHYQDQLELLNRKIKDVAGLKVI 534
            WEKIIS + YFSVTSH +H ++NN MF NVKVKDAI DR+RRET +RPDSGS +   VI+LYW +  AE+ LDTSGETL+KHGYRK+PG+APMLEALASAT+LA+KWDR+ PFVNPMCGS TVAIEAVL+ATNR+PGL RKNYSFMH+IGYDE  YQ + E LN++I ++  LKV+
Sbjct:   84 WEKIISPDGYFSVTSHAEHFTINNEMFVNVKVKDAIVDRMRRETGRRPDSGSDLSKTVIHLYWKDERAEIFLDTSGETLAKHGYRKIPGRAPMLEALASATLLATKWDRRVPFVNPMCGSSTVAIEAVLLATNRKPGLFRKNYSFMHMIGYDETVYQTEFEKLNKQIIEIPNLKVL 259
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BLAST of mRNA_P-wetherbeei_contig53658.1.1 vs. uniprot
Match: UPI00191EBD44 (class I SAM-dependent RNA methyltransferase n=1 Tax=Chryseolinea sp. Jin1 TaxID=2801331 RepID=UPI00191EBD44)

HSP 1 Score: 262 bits (670), Expect = 3.730e-84
Identity = 121/177 (68.36%), Postives = 151/177 (85.31%), Query Frame = 1 
Query:    4 PWEKIISINEYFSVTSHVDHPSVNNTMFSNVKVKDAIADRIRRETAKRPDSGSAMDGAVINLYWWELDAEVXLDTSGETLSKHGYRKVPGKAPMLEALASATILASKWDRQSPFVNPMCGSGTVAIEAVLMATNRRPGLIRKNYSFMHVIGYDEQHYQDQLELLNRKIKDVAGLKVI 534
            PWEKI++ + YFSVTS+VDHP++NN+MF NVKVKDAI DR+R+ET +RPDSGS + GAVI+LYW +  AE+ LDTSGETL+KHGYRK+PGKAPMLEALA+ATI+ASKWDR S FVNPMCGSGTVAIEA L+AT R PGL R NYSFMHV+G+++  Y  +L+ +  ++++V GLKVI
Sbjct:   86 PWEKILAKDGYFSVTSNVDHPTINNSMFVNVKVKDAIVDRMRQETGQRPDSGSELTGAVIHLYWKDDRAEIFLDTSGETLAKHGYRKIPGKAPMLEALAAATIMASKWDRTSTFVNPMCGSGTVAIEAALLATRRAPGLYRSNYSFMHVLGFEQDFYDKELKTIQEQVQEVPGLKVI 262
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BLAST of mRNA_P-wetherbeei_contig53658.1.1 vs. uniprot
Match: A0A7Y4R6Z4_9BACT (Class I SAM-dependent RNA methyltransferase n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4R6Z4_9BACT)

HSP 1 Score: 258 bits (659), Expect = 1.310e-82
Identity = 123/178 (69.10%), Postives = 147/178 (82.58%), Query Frame = 1 
Query:    1 YPWEKIISINEYFSVTSHVDHPSVNNTMFSNVKVKDAIADRIRRETAKRPDSGSAMDGAVINLYWWELDAEVXLDTSGETLSKHGYRKVPGKAPMLEALASATILASKWDRQSPFVNPMCGSGTVAIEAVLMATNRRPGLIRKNYSFMHVIGYDEQHYQDQLELLNRKIKDVAGLKVI 534
            YPWE ++ I+ YFSVTS+  H +VNN MF NVKVKDAI D++RRE AKRPD+G + D AVI+LYW E D EV  DTSG+TL+KHGYRK+PG+APMLEALA+ATI A+KWDRQS FVNPMCGSGT+AIEA L+ATNRRPGL RKNYSFMHV+GYD   Y+ +L+LLN KI  +  LK+I
Sbjct:   85 YPWETLLPIDGYFSVTSNAKHFTVNNDMFVNVKVKDAIVDKMRREFAKRPDTGPSHDKAVIHLYWNEKDVEVFFDTSGQTLAKHGYRKIPGQAPMLEALAAATIYATKWDRQSAFVNPMCGSGTLAIEAALIATNRRPGLYRKNYSFMHVLGYDASVYESELQLLNEKIAVLPDLKII 262
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BLAST of mRNA_P-wetherbeei_contig53658.1.1 vs. uniprot
Match: A0A364Y4I3_9BACT (Class I SAM-dependent RNA methyltransferase n=1 Tax=Chryseolinea flava TaxID=2059302 RepID=A0A364Y4I3_9BACT)

HSP 1 Score: 255 bits (652), Expect = 1.370e-81
Identity = 117/177 (66.10%), Postives = 146/177 (82.49%), Query Frame = 1 
Query:    1 YPWEKIISINEYFSVTSHVDHPSVNNTMFSNVKVKDAIADRIRRETAKRPDSGSAMDGAVINLYWWELDAEVXLDTSGETLSKHGYRKVPGKAPMLEALASATILASKWDRQSPFVNPMCGSGTVAIEAVLMATNRRPGLIRKNYSFMHVIGYDEQHYQDQLELLNRKIKDVAGLKV 531
            YPWE +I  + YFSVTS+V HP+VN  +F+NVKVKDAIADR RR+   RP+SG  +D AVI+LYW +  AE+ +DTSG TL+KHGYRK+PGKAPMLEALA+AT++A KWDRQSPFVNPMCGSGTVAIEA L+ATNR+PGL R NY+FMH+IGYD+  Y++ L  +  +IK+V GLK+
Sbjct:   85 YPWENLIQKDGYFSVTSNVSHPTVNTELFANVKVKDAIADRFRRQVGTRPNSGPEVDQAVIHLYWKDERAEIFIDTSGATLAKHGYRKIPGKAPMLEALATATLMAGKWDRQSPFVNPMCGSGTVAIEAALLATNRKPGLYRDNYAFMHIIGYDDAVYKEALRKIRTEIKEVPGLKI 261
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BLAST of mRNA_P-wetherbeei_contig53658.1.1 vs. uniprot
Match: UPI001058F2DE (class I SAM-dependent RNA methyltransferase n=1 Tax=Segetibacter sp. 3557_3 TaxID=2547429 RepID=UPI001058F2DE)

HSP 1 Score: 255 bits (651), Expect = 2.120e-81
Identity = 113/176 (64.20%), Postives = 150/176 (85.23%), Query Frame = 1 
Query:    7 WEKIISINEYFSVTSHVDHPSVNNTMFSNVKVKDAIADRIRRETAKRPDSGSAMDGAVINLYWWELDAEVXLDTSGETLSKHGYRKVPGKAPMLEALASATILASKWDRQSPFVNPMCGSGTVAIEAVLMATNRRPGLIRKNYSFMHVIGYDEQHYQDQLELLNRKIKDVAGLKVI 534
            WEKI+ +N YFS+TS+V+HP++ NTMF+NVKVKDAI DRIR ET  RP+SG +++  V++L+W E  AE+ +DTSGETL+KHGYRK+PGKAPMLEALA+ATILA++WDR SPFVNPMCGS T+AIEA L+ATNRRPGL R+NY FMH+ GYD+  Y++QL+ + +++++VA L +I
Sbjct:   87 WEKILPLNGYFSITSNVNHPTITNTMFANVKVKDAIVDRIRNETGSRPNSGPSLEQTVVHLFWKEESAEIFIDTSGETLAKHGYRKIPGKAPMLEALAAATILATRWDRVSPFVNPMCGSSTIAIEAALIATNRRPGLFRENYGFMHLQGYDKNTYENQLQQIRQQVREVAELTII 262
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BLAST of mRNA_P-wetherbeei_contig53658.1.1 vs. uniprot
Match: A0A136LQ48_9BACT (rRNA (Guanine-N(2)-)-methyltransferase n=3 Tax=Bacteroidetes TaxID=976 RepID=A0A136LQ48_9BACT)

HSP 1 Score: 254 bits (649), Expect = 3.900e-81
Identity = 119/178 (66.85%), Postives = 148/178 (83.15%), Query Frame = 1 
Query:    1 YPWEKIISINEYFSVTSHVDHPSVNNTMFSNVKVKDAIADRIRRETAKRPDSGSAMDGAVINLYWWELDAEVXLDTSGETLSKHGYRKVPGKAPMLEALASATILASKWDRQSPFVNPMCGSGTVAIEAVLMATNRRPGLIRKNYSFMHVIGYDEQHYQDQLELLNRKIKDVAGLKVI 534
            YPWE +++ + YFSVTS+  H +VNN MF NVKVKDAIADR+RRET +RP+SGS + GAV +LYW +  AE+ LDTSGETL+KHGYRK+PGKAPMLEALA+ATI+A++WDRQS FVNPMCGSGTVAIEA +MATNRRPGL R NYSFMHV GYD   Y+++ + L ++I  V GL+++
Sbjct:   86 YPWETLLTSDGYFSVTSNATHFTVNNDMFVNVKVKDAIADRMRRETMRRPNSGSELSGAVFHLYWKDEQAEIFLDTSGETLAKHGYRKIPGKAPMLEALAAATIMATRWDRQSAFVNPMCGSGTVAIEAAMMATNRRPGLYRNNYSFMHVTGYDAALYKNEWKNLQQQITAVPGLRIV 263
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BLAST of mRNA_P-wetherbeei_contig53658.1.1 vs. uniprot
Match: A0A7Y4XQA6_9BACT (Class I SAM-dependent RNA methyltransferase n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4XQA6_9BACT)

HSP 1 Score: 254 bits (648), Expect = 6.960e-81
Identity = 119/178 (66.85%), Postives = 149/178 (83.71%), Query Frame = 1 
Query:    1 YPWEKIISINEYFSVTSHVDHPSVNNTMFSNVKVKDAIADRIRRETAKRPDSGSAMDGAVINLYWWELDAEVXLDTSGETLSKHGYRKVPGKAPMLEALASATILASKWDRQSPFVNPMCGSGTVAIEAVLMATNRRPGLIRKNYSFMHVIGYDEQHYQDQLELLNRKIKDVAGLKVI 534
            Y WEK+I  + Y SVTS+VD+ +VN+ +F NVKVKDAIADRIRRET+KRPDSG  ++  VINLYW E DAE+ +DTSG TL+KHGYRK+PGKAPMLEALA+AT++ASKWDR++PFVNPMCGS T+AIEA+L+ATNRRPGL R NYSFMHV GYD++ Y  + + +  +I +V GL+VI
Sbjct:   85 YQWEKLIPEDGYISVTSNVDNFTVNSDLFMNVKVKDAIADRIRRETSKRPDSGPELEHTVINLYWKEEDAEIFIDTSGHTLAKHGYRKIPGKAPMLEALAAATLIASKWDRKTPFVNPMCGSSTIAIEALLLATNRRPGLYRNNYSFMHVNGYDKEVYDSEFKKIEEQIIEVQGLEVI 262
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BLAST of mRNA_P-wetherbeei_contig53658.1.1 vs. uniprot
Match: A0A7L9BEA5_9BACT (Class I SAM-dependent RNA methyltransferase n=1 Tax=Flammeovirgaceae bacterium TaxID=2026740 RepID=A0A7L9BEA5_9BACT)

HSP 1 Score: 253 bits (647), Expect = 8.280e-81
Identity = 119/178 (66.85%), Postives = 143/178 (80.34%), Query Frame = 1 
Query:    1 YPWEKIISINEYFSVTSHVDHPSVNNTMFSNVKVKDAIADRIRRETAKRPDSGSAMDGAVINLYWWELDAEVXLDTSGETLSKHGYRKVPGKAPMLEALASATILASKWDRQSPFVNPMCGSGTVAIEAVLMATNRRPGLIRKNYSFMHVIGYDEQHYQDQLELLNRKIKDVAGLKVI 534
            +PWE +I    +FSVT +V+HPSVNN +F NVKVKDAIADR R +T KRPDSG  +D  VI+L+W E  AE+ LDTSG TLSKHGYRK+PGKAPMLEALA+ATILA KW+R SPF+NPMCGSGT+AIEA L+A NR+PGL RKNYSFMH++GYDE  YQ++L  L   IK +  LK+I
Sbjct:   85 FPWEVVIPAGGFFSVTCNVNHPSVNNELFVNVKVKDAIADRFREKTGKRPDSGPELDHVVIHLFWKEKYAELFLDTSGHTLSKHGYRKIPGKAPMLEALAAATILAGKWNRVSPFINPMCGSGTLAIEAALLAANRKPGLYRKNYSFMHIVGYDEVVYQNELRKLQNAIKVIPNLKII 262
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BLAST of mRNA_P-wetherbeei_contig53658.1.1 vs. uniprot
Match: A0A1M5LT99_9BACT (Putative N6-adenine-specific DNA methylase n=3 Tax=Chryseolinea TaxID=1433993 RepID=A0A1M5LT99_9BACT)

HSP 1 Score: 254 bits (649), Expect = 1.120e-80
Identity = 117/177 (66.10%), Postives = 147/177 (83.05%), Query Frame = 1 
Query:    4 PWEKIISINEYFSVTSHVDHPSVNNTMFSNVKVKDAIADRIRRETAKRPDSGSAMDGAVINLYWWELDAEVXLDTSGETLSKHGYRKVPGKAPMLEALASATILASKWDRQSPFVNPMCGSGTVAIEAVLMATNRRPGLIRKNYSFMHVIGYDEQHYQDQLELLNRKIKDVAGLKVI 534
            PWE I++ + YFSVTS+VDHP+VNN MF NVKVKDAI DR+R ET +RPDSG+ + GAVI+LYW +  AEV +DTSGETL+KHGYRK+PGKAPMLEALA+AT++A+KWDR SPF+NPMCGSGTVAIEA L+AT R PGL R +YSFMHV+GY +  YQ +LE +  ++ +V GL ++
Sbjct:  113 PWETILAKDGYFSVTSNVDHPTVNNNMFVNVKVKDAIVDRMRSETGQRPDSGNELTGAVIHLYWKDDRAEVFIDTSGETLAKHGYRKIPGKAPMLEALAAATVMATKWDRVSPFINPMCGSGTVAIEAALLATKRVPGLYRSDYSFMHVLGYTDDLYQKELETIRNQVIEVPGLTIV 289
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53658.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y4V881_9BACT9.110e-8670.79Class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
UPI0019DCEA8D1.750e-8470.45RNA methyltransferase n=1 Tax=Cytophagales bacteri... [more]
UPI00191EBD443.730e-8468.36class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
A0A7Y4R6Z4_9BACT1.310e-8269.10Class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
A0A364Y4I3_9BACT1.370e-8166.10Class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
UPI001058F2DE2.120e-8164.20class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
A0A136LQ48_9BACT3.900e-8166.85rRNA (Guanine-N(2)-)-methyltransferase n=3 Tax=Bac... [more]
A0A7Y4XQA6_9BACT6.960e-8166.85Class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
A0A7L9BEA5_9BACT8.280e-8166.85Class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
A0A1M5LT99_9BACT1.120e-8066.10Putative N6-adenine-specific DNA methylase n=3 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53658contigP-wetherbeei_contig53658:2..535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog509635.N824_09525
Preferred nameypsC
PFAMsTHUMP,UPF0020
Model size534
Max annot lvl976|Bacteroidetes
KEGG koko:K07444
Exons1
Evalue4.64e-75
EggNOG OGsCOG0116@1|root,COG0116@2|Bacteria,4NFJM@976|Bacteroidetes,1IQEJ@117747|Sphingobacteriia
DescriptionBelongs to the methyltransferase superfamily
Cds size534
COG categoryL
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.5890055-CDS-P-wetherbeei_contig53658:1..5351683186802.5890055-CDS-P-wetherbeei_contig53658:1..535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53658 2..535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53658.1.1prot_P-wetherbeei_contig53658.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53658 2..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53658.1.1

>prot_P-wetherbeei_contig53658.1.1 ID=prot_P-wetherbeei_contig53658.1.1|Name=mRNA_P-wetherbeei_contig53658.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
YPWEKIISINEYFSVTSHVDHPSVNNTMFSNVKVKDAIADRIRRETAKRP
DSGSAMDGAVINLYWWELDAEVXLDTSGETLSKHGYRKVPGKAPMLEALA
SATILASKWDRQSPFVNPMCGSGTVAIEAVLMATNRRPGLIRKNYSFMHV
IGYDEQHYQDQLELLNRKIKDVAGLKVI
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mRNA from alignment at P-wetherbeei_contig53658:2..535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53658.1.1 ID=mRNA_P-wetherbeei_contig53658.1.1|Name=mRNA_P-wetherbeei_contig53658.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig53658:2..535+ (Phaeothamnion wetherbeei SAG_119_79)
TATCCATGGGAAAAGATTATTTCCATAAATGAATATTTTTCGGTTACAAG
CCACGTAGATCATCCAAGTGTGAACAATACTATGTTCTCCAATGTAAAAG
TAAAAGACGCCATTGCAGATCGGATAAGAAGAGAAACAGCAAAGCGTCCG
GATTCGGGTTCAGCGATGGACGGTGCAGTTATTAATTTGTACTGGTGGGA
ATTAGATGCCGAAGTTNTCCTGGATACATCGGGTGAAACATTATCGAAAC
ACGGTTATCGCAAAGTGCCTGGGAAAGCACCTATGCTGGAAGCGCTGGCA
TCGGCAACAATTCTTGCTTCGAAGTGGGATCGTCAATCACCGTTTGTTAA
TCCCATGTGCGGATCGGGAACGGTGGCAATTGAAGCTGTGCTGATGGCAA
CGAACCGCAGGCCCGGGTTGATTCGAAAGAATTATTCTTTTATGCATGTG
ATCGGGTATGATGAACAACATTATCAGGATCAACTTGAATTGCTTAATCG
GAAAATAAAAGATGTTGCTGGACTAAAAGTTATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53658:2..535+

>mRNA_P-wetherbeei_contig53658.1.1 ID=mRNA_P-wetherbeei_contig53658.1.1|Name=mRNA_P-wetherbeei_contig53658.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig53658:2..535+ (Phaeothamnion wetherbeei SAG_119_79)
TATCCATGGGAAAAGATTATTTCCATAAATGAATATTTTTCGGTTACAAG
CCACGTAGATCATCCAAGTGTGAACAATACTATGTTCTCCAATGTAAAAG
TAAAAGACGCCATTGCAGATCGGATAAGAAGAGAAACAGCAAAGCGTCCG
GATTCGGGTTCAGCGATGGACGGTGCAGTTATTAATTTGTACTGGTGGGA
ATTAGATGCCGAAGTTNTCCTGGATACATCGGGTGAAACATTATCGAAAC
ACGGTTATCGCAAAGTGCCTGGGAAAGCACCTATGCTGGAAGCGCTGGCA
TCGGCAACAATTCTTGCTTCGAAGTGGGATCGTCAATCACCGTTTGTTAA
TCCCATGTGCGGATCGGGAACGGTGGCAATTGAAGCTGTGCTGATGGCAA
CGAACCGCAGGCCCGGGTTGATTCGAAAGAATTATTCTTTTATGCATGTG
ATCGGGTATGATGAACAACATTATCAGGATCAACTTGAATTGCTTAATCG
GAAAATAAAAGATGTTGCTGGACTAAAAGTTATT
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