mRNA_P-wetherbeei_contig5362.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5362.1.1
Unique NamemRNA_P-wetherbeei_contig5362.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5362.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5362contigP-wetherbeei_contig5362:522..2344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1667
Hectar predicted targeting categorysignal peptide
Exons2
Cds size1293
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.0942988-UTR-P-wetherbeei_contig5362:521..7201683186802.0942988-UTR-P-wetherbeei_contig5362:521..720Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5362 522..720 -
1683186802.1343913-UTR-P-wetherbeei_contig5362:2169..23441683186802.1343913-UTR-P-wetherbeei_contig5362:2169..2344Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5362 2170..2344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.1066816-CDS-P-wetherbeei_contig5362:720..19191683186802.1066816-CDS-P-wetherbeei_contig5362:720..1919Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5362 721..1919 -
1683186802.1160333-CDS-P-wetherbeei_contig5362:2075..21691683186802.1160333-CDS-P-wetherbeei_contig5362:2075..2169Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5362 2076..2169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5362.1.1prot_P-wetherbeei_contig5362.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5362 721..2169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5362.1.1

>prot_P-wetherbeei_contig5362.1.1 ID=prot_P-wetherbeei_contig5362.1.1|Name=mRNA_P-wetherbeei_contig5362.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=431bp
MGWVMAMASSGLTTIAVLMLTSYPGCSKRLRGDATWLHDAKSLLRKSVRI
GVFDGSITGIVVSDGTSYSASTLPNADGSGEEDKTLETGEGLLPEAWKWW
RSLLPPGRQSAAAPEVVAAAPAATAALAAAVAAAPLWLPAPQTPEADSGW
PQQTSSHVPNSWRTTSSTEVLWVNSIGIITGLWRRNVNGTPMSRGYMESD
SFDMSDSGLEAPAIYGQFGGFFGTGGNSSSIGGGAGKSGGNAFDFGGNGD
KEDRGSSGGADNNTSGRYSSDGGYSSDGGISSHSEVSSSGGNRSSGSESH
HGSESSSGAASSGCGGTSSERGGTSNVASDRAGHNVESSWFGDFSSDSEG
DLVLRSAGVDAGSGGDGLGAEFKMRGVNPTSGDAGVAAFDDADFWVAGGN
GGVGFVAEHLERFWLDPFEGAAVAWMVQDV*
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mRNA from alignment at P-wetherbeei_contig5362:522..2344-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5362.1.1 ID=mRNA_P-wetherbeei_contig5362.1.1|Name=mRNA_P-wetherbeei_contig5362.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1823bp|location=Sequence derived from alignment at P-wetherbeei_contig5362:522..2344- (Phaeothamnion wetherbeei SAG_119_79)
AAATATCTAGAAACCGGCTGTCTCTAAAGCTGGCCATGAGGCGCGAAAGA
GAGATGCCCCGAAGCGCTGGTGGGCCAGCATATTTTTTGGATCGTATCTT
CGCGGCCGTGTCACACATCGGCGAACGCGGGAAAGGACTTTCAAGAATTA
GCCAGTGCTTCTCTGCTAGCGCGAAATGGGCTGGGTGATGGCGATGGCAA
GCTCTGGATTGACGACAATCGCAGTTCTAATGCTGACTTCGTATCCAGGG
TGCAGCAAGAGGCTCCGCGGTGAGAAGAACCTGCAAATGCAACTCTCTTT
CCTGCAAAGGTTCTTGTGATTCTAAGAGGAAAGAAGCTTTTGTTTCCTTC
TAAACCGTTTGCCGCCTTCCCTTCCACCTCATAAGTGATCCGCTTCCCTA
CTCTCTGAACCACCCAATTTCACAGGCGATGCTACGTGGCTGCATGATGC
GAAGAGTCTTCTTCGCAAATCCGTGCGCATCGGCGTCTTCGACGGCTCCA
TCACCGGCATCGTCGTCAGCGATGGCACCAGCTACAGCGCTAGTACTTTG
CCCAACGCAGATGGGTCCGGAGAGGAGGACAAGACTCTGGAGACCGGGGA
GGGACTCCTTCCTGAAGCATGGAAGTGGTGGCGGAGCCTCCTCCCGCCAG
GCCGCCAATCAGCTGCGGCTCCGGAAGTGGTAGCTGCAGCCCCGGCAGCG
ACGGCGGCGCTGGCTGCGGCGGTTGCGGCCGCGCCGCTATGGCTCCCAGC
GCCGCAGACGCCCGAAGCCGACAGCGGTTGGCCGCAGCAAACCTCTTCCC
ACGTGCCGAACTCCTGGCGGACGACGTCGAGCACTGAGGTCTTGTGGGTG
AATTCCATCGGGATCATAACGGGCCTGTGGCGGAGGAACGTGAACGGGAC
CCCAATGAGCAGGGGATACATGGAAAGCGACTCCTTTGACATGAGCGACT
CTGGCTTGGAGGCGCCGGCCATCTATGGCCAATTCGGCGGATTTTTTGGC
ACCGGCGGGAACAGCAGCAGCATCGGTGGTGGTGCCGGCAAGAGCGGCGG
GAATGCGTTTGATTTTGGTGGTAACGGGGATAAAGAAGACCGCGGCAGCA
GTGGTGGCGCCGATAATAACACCAGCGGCCGCTACAGCAGCGATGGCGGC
TACAGCAGCGATGGCGGCATCAGCAGCCACAGCGAAGTCAGCAGCAGTGG
CGGCAACCGCAGCAGCGGCAGCGAGAGCCACCACGGCAGCGAAAGCAGCA
GCGGCGCCGCGAGCAGCGGCTGCGGAGGCACCAGCAGCGAGAGGGGCGGC
ACCAGCAACGTCGCATCCGACCGGGCAGGCCACAATGTTGAGTCGTCGTG
GTTCGGGGACTTTTCCAGCGACTCCGAGGGGGACCTTGTTCTCCGCAGCG
CCGGCGTCGACGCCGGCAGCGGCGGGGACGGTCTCGGTGCCGAGTTTAAA
ATGCGTGGCGTCAATCCCACCAGTGGTGACGCTGGCGTTGCTGCCTTTGA
CGATGCTGACTTTTGGGTCGCAGGCGGCAATGGCGGCGTTGGCTTCGTCG
CCGAGCATTTGGAACGATTCTGGTTGGACCCGTTTGAGGGGGCTGCGGTC
GCGTGGATGGTGCAGGACGTTTAACGGTTCATCCAGTTTCTGTCTCCAGA
AGAGGTGCGTGTGAATTTCGTCCATAGCGTCGACAGCGGGATATGCGTAG
CGATACATAGCTGTGGATGGGCACAAGCAAAGAAAGCACAATGTATGCGT
GGAGCAAGTAGGTGTTCGGGCAAGAAGGGCGAAGGAAGGGAGGTTCTTCT
GTTATCATTAACGATGTGTCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5362:522..2344-

>mRNA_P-wetherbeei_contig5362.1.1 ID=mRNA_P-wetherbeei_contig5362.1.1|Name=mRNA_P-wetherbeei_contig5362.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1293bp|location=Sequence derived from alignment at P-wetherbeei_contig5362:522..2344- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCTGGGTGATGGCGATGGCAAGCTCTGGATTGACGACAATCGCAGT
TCTAATGCTGACTTCGTATCCAGGGTGCAGCAAGAGGCTCCGCGGCGATG
CTACGTGGCTGCATGATGCGAAGAGTCTTCTTCGCAAATCCGTGCGCATC
GGCGTCTTCGACGGCTCCATCACCGGCATCGTCGTCAGCGATGGCACCAG
CTACAGCGCTAGTACTTTGCCCAACGCAGATGGGTCCGGAGAGGAGGACA
AGACTCTGGAGACCGGGGAGGGACTCCTTCCTGAAGCATGGAAGTGGTGG
CGGAGCCTCCTCCCGCCAGGCCGCCAATCAGCTGCGGCTCCGGAAGTGGT
AGCTGCAGCCCCGGCAGCGACGGCGGCGCTGGCTGCGGCGGTTGCGGCCG
CGCCGCTATGGCTCCCAGCGCCGCAGACGCCCGAAGCCGACAGCGGTTGG
CCGCAGCAAACCTCTTCCCACGTGCCGAACTCCTGGCGGACGACGTCGAG
CACTGAGGTCTTGTGGGTGAATTCCATCGGGATCATAACGGGCCTGTGGC
GGAGGAACGTGAACGGGACCCCAATGAGCAGGGGATACATGGAAAGCGAC
TCCTTTGACATGAGCGACTCTGGCTTGGAGGCGCCGGCCATCTATGGCCA
ATTCGGCGGATTTTTTGGCACCGGCGGGAACAGCAGCAGCATCGGTGGTG
GTGCCGGCAAGAGCGGCGGGAATGCGTTTGATTTTGGTGGTAACGGGGAT
AAAGAAGACCGCGGCAGCAGTGGTGGCGCCGATAATAACACCAGCGGCCG
CTACAGCAGCGATGGCGGCTACAGCAGCGATGGCGGCATCAGCAGCCACA
GCGAAGTCAGCAGCAGTGGCGGCAACCGCAGCAGCGGCAGCGAGAGCCAC
CACGGCAGCGAAAGCAGCAGCGGCGCCGCGAGCAGCGGCTGCGGAGGCAC
CAGCAGCGAGAGGGGCGGCACCAGCAACGTCGCATCCGACCGGGCAGGCC
ACAATGTTGAGTCGTCGTGGTTCGGGGACTTTTCCAGCGACTCCGAGGGG
GACCTTGTTCTCCGCAGCGCCGGCGTCGACGCCGGCAGCGGCGGGGACGG
TCTCGGTGCCGAGTTTAAAATGCGTGGCGTCAATCCCACCAGTGGTGACG
CTGGCGTTGCTGCCTTTGACGATGCTGACTTTTGGGTCGCAGGCGGCAAT
GGCGGCGTTGGCTTCGTCGCCGAGCATTTGGAACGATTCTGGTTGGACCC
GTTTGAGGGGGCTGCGGTCGCGTGGATGGTGCAGGACGTTTAA
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