mRNA_P-wetherbeei_contig5353.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5353.3.1
Unique NamemRNA_P-wetherbeei_contig5353.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5353.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5353contigP-wetherbeei_contig5353:1363..2570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr50156
Model size747
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons3
Evalue0.000371
EggNOG OGs2F195@1|root,2T2AH@2759|Eukaryota,2XDYR@2836|Bacillariophyta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001680.1
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186800.5742538-UTR-P-wetherbeei_contig5353:1362..16271683186800.5742538-UTR-P-wetherbeei_contig5353:1362..1627Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5353 1363..1627 -
1683186800.624437-UTR-P-wetherbeei_contig5353:2541..25701683186800.624437-UTR-P-wetherbeei_contig5353:2541..2570Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5353 2542..2570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186800.586136-CDS-P-wetherbeei_contig5353:1627..16901683186800.586136-CDS-P-wetherbeei_contig5353:1627..1690Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5353 1628..1690 -
1683186800.601155-CDS-P-wetherbeei_contig5353:1873..19971683186800.601155-CDS-P-wetherbeei_contig5353:1873..1997Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5353 1874..1997 -
1683186800.6137967-CDS-P-wetherbeei_contig5353:2275..25411683186800.6137967-CDS-P-wetherbeei_contig5353:2275..2541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5353 2276..2541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5353.3.1prot_P-wetherbeei_contig5353.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5353 1628..2541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5353.3.1

>prot_P-wetherbeei_contig5353.3.1 ID=prot_P-wetherbeei_contig5353.3.1|Name=mRNA_P-wetherbeei_contig5353.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MKYSFVAALFVVLKVNCLVPPRPALALRSPFSVSQTSLARIASRRRLAMS
SNEEEKEEQFSVDWDAELKKLSSGALQPGEQPKGLDDVSEREVQAYRLQK
QVSSSFKEVRRSVPSWKQLQKDQRFWLGLLVGVSFLLAILSAMNREELIV
*
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mRNA from alignment at P-wetherbeei_contig5353:1363..2570-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5353.3.1 ID=mRNA_P-wetherbeei_contig5353.3.1|Name=mRNA_P-wetherbeei_contig5353.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1208bp|location=Sequence derived from alignment at P-wetherbeei_contig5353:1363..2570- (Phaeothamnion wetherbeei SAG_119_79)
CAAAGATACACAGCTTGGGGAAGGGCAGAATGAAGTATTCCTTCGTCGCC
GCACTTTTTGTAGTTCTCAAGGTGAATTGCCTCGTTCCGCCGCGGCCAGC
GCTAGCCTTACGGTCCCCCTTTTCCGTTTCACAGACTTCATTAGCGAGGA
TCGCATCACGGCGAAGGCTCGCCATGTCATCAAACGAGGAAGAGAAAGAG
GAGCAGTTCTCGGTAGACTGGGACGCTGAGCTGAAGAAACTAAGCAGCGG
GGCGCTGCAGCCAGGAGAGCAGCCGAAGGGACTCGACGATGTTAGGTAAG
AGGATCTCCTTTTCTCTTCCACTTTCTCATTGCTTTCTTATGAAAGTCTC
GATAATCGCCTCCTATTTCGTCTCAGAGTGTACACCGCATAAAGTAGATC
GGTTGAGTTATCCCACGGCGTCTCCAGTTTGCGTCGGTTCTCCCTTTTGC
TGTTTAATAAGAGACTCTGCTCGATCTCCGCGTCCTCTTCTCTATATGTC
CCTCTCACACATTTGCCTCATCGCTCGCCCGCGCCAATTTCCGCCGTTTT
CCCTGTTTTACTTTTACCTTCAGCGAGCGCGAAGTGCAGGCCTACCGCCT
CCAGAAACAAGTCTCGTCTTCGTTCAAGGAAGTGCGTCGGAGCGTCCCGA
GCTGGAAGCAGCTGCAAAAGGACCAGCGATTCTGGCTTGGCCTCTTGGTA
CGTACATAGTAAATATTTTGGTTTTGGCGAACATAGTCGAGAAGAACATT
TAAATTCTTGCGTCTACATCATGCTTCCTCACGATCGTGAACTCGTTTAT
GGATGAGATGGAGGAAAAATATGTTTATTATAACCTCCACTCTTCTGCAA
TGCTTTTCGCCATCCATCTCATGCGACCAGGTGGGAGTGAGCTTCCTGCT
GGCTATCTTGTCAGCAATGAACCGAGAGGAGCTCATAGTATAGGCACGGA
GAGAAGACGTCGGCGTGGGAAATGGCATCGGCCAGGCGTTCGCGGCACGG
CTCCGCCGCCGTGTCATTAGGTACAGAAGGGAACAAGTGATGGATTTCTA
GTTTACCGATGTGGCGAAGTGCAGAGAAGTAGTGCTAGTGAGCGCGGCTC
GCGGCTCGCACTCACACCTGGTCTCTTGCCGTGAAACTTTGGAGAGGAAG
CGCGAATGCAATATAATCCATCCAGACTTGTTAGAGTAAGGACACTTGAA
CCAGTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5353:1363..2570-

>mRNA_P-wetherbeei_contig5353.3.1 ID=mRNA_P-wetherbeei_contig5353.3.1|Name=mRNA_P-wetherbeei_contig5353.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig5353:1363..2570- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGTATTCCTTCGTCGCCGCACTTTTTGTAGTTCTCAAGGTGAATTG
CCTCGTTCCGCCGCGGCCAGCGCTAGCCTTACGGTCCCCCTTTTCCGTTT
CACAGACTTCATTAGCGAGGATCGCATCACGGCGAAGGCTCGCCATGTCA
TCAAACGAGGAAGAGAAAGAGGAGCAGTTCTCGGTAGACTGGGACGCTGA
GCTGAAGAAACTAAGCAGCGGGGCGCTGCAGCCAGGAGAGCAGCCGAAGG
GACTCGACGATGTTAGCGAGCGCGAAGTGCAGGCCTACCGCCTCCAGAAA
CAAGTCTCGTCTTCGTTCAAGGAAGTGCGTCGGAGCGTCCCGAGCTGGAA
GCAGCTGCAAAAGGACCAGCGATTCTGGCTTGGCCTCTTGGTGGGAGTGA
GCTTCCTGCTGGCTATCTTGTCAGCAATGAACCGAGAGGAGCTCATAGTA
TAG
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