mRNA_P-wetherbeei_contig53417.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53417.1.1
Unique NamemRNA_P-wetherbeei_contig53417.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53417.1.1 vs. uniprot
Match: A0A0S8B0A3_9PROT (CMD domain-containing protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B0A3_9PROT)

HSP 1 Score: 106 bits (265), Expect = 2.270e-27
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 LAQWRTSEEFDARERAALGIAEAVTAGKVDDATWAEGVAQFSNEEMVELVLVAGFYSMVGRVLDALRVELDDDIRDYAPRLP 246
            LA WR S+EFDARERAAL + EAVTAG V DA +AE    F + E VEL + A FY MVGR+LDA+RVELD+D RDYAP+LP
Sbjct:   96 LADWRNSKEFDARERAALLLTEAVTAGDVSDAVYAEVSKIFDHSEYVELCITAAFYCMVGRMLDAMRVELDEDARDYAPKLP 177          
BLAST of mRNA_P-wetherbeei_contig53417.1.1 vs. uniprot
Match: UPI001998A6A5 (Carboxymuconolactone decarboxylase family protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI001998A6A5)

HSP 1 Score: 97.4 bits (241), Expect = 8.830e-24
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 LAQWRTSEEFDARERAALGIAEAVTAGKVDDATWAEGVAQFSNEEMVELVLVAGFYSMVGRVLDALRVELDDDIRDYAPRLP 246
            LA WR S EFDA+ERA L + E+V A  V D   AE    FS+ E VEL L AGFY+MV R+LDA+RVELD D+RDY+PRLP
Sbjct:   93 LADWRGSAEFDAKERAVLALTESVMACDVSDQVHAEVKKYFSDAEFVELSLTAGFYAMVSRMLDAMRVELDPDVRDYSPRLP 174          
BLAST of mRNA_P-wetherbeei_contig53417.1.1 vs. uniprot
Match: A0A521Z4D7_9PROT (Carboxymuconolactone decarboxylase family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521Z4D7_9PROT)

HSP 1 Score: 95.5 bits (236), Expect = 5.390e-23
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 LAQWRTSEEFDARERAALGIAEAVTAGKVDDATWAEGVAQFSNEEMVELVLVAGFYSMVGRVLDALRVELDDDIRDYAPRLP 246
            L  WR S EFD+RE+AAL IA+AVT G+V D T+ + +  F + + VEL + AGFY+MV RVLDA+RV L+ + RDYAP+LP
Sbjct:   96 LDTWRESPEFDSREKAALAIADAVTEGRVSDETYRDVMKHFDHHDFVELAVTAGFYAMVSRVLDAMRVPLEPEHRDYAPKLP 177          
BLAST of mRNA_P-wetherbeei_contig53417.1.1 vs. uniprot
Match: A0A537A4Z3_9PROT (Carboxymuconolactone decarboxylase family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A4Z3_9PROT)

HSP 1 Score: 94.7 bits (234), Expect = 1.220e-22
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 LAQWRTSEEFDARERAALGIAEAVTAGKVDDATWAEGVAQFSNEEMVELVLVAGFYSMVGRVLDALRVELDDDIRDYAPRLP 246
            L+ WRTS EFD RE+AAL +AE VT G V DA  AE +  F + + VEL  VA FY+MVGR+LDA+ V+L+ D RD++P LP
Sbjct:  100 LSAWRTSGEFDQREKAALALAEEVTQGHVSDAVHAEALRHFDHHDYVELAAVAAFYAMVGRMLDAMGVQLEPDFRDFSPELP 181          
BLAST of mRNA_P-wetherbeei_contig53417.1.1 vs. uniprot
Match: A0A536Y4M8_9PROT (Carboxymuconolactone decarboxylase family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Y4M8_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 4.320e-22
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 LAQWRTSEEFDARERAALGIAEAVTAGKVDDATWAEGVAQFSNEEMVELVLVAGFYSMVGRVLDALRVELDDDIRDYAPRL 243
            LA WRTS EFD RE+AAL +AEAVT G+V D  +      F + + VEL  VA FY+MVGR+LDA+ V LD+D+R+Y PRL
Sbjct:   96 LANWRTSSEFDEREKAALELAEAVTNGRVSDEVYGRVGRHFDHHDYVELAAVAAFYAMVGRMLDAMGVPLDEDVRNYQPRL 176          
BLAST of mRNA_P-wetherbeei_contig53417.1.1 vs. uniprot
Match: A0A537DAD2_9PROT (Carboxymuconolactone decarboxylase family protein n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537DAD2_9PROT)

HSP 1 Score: 92.0 bits (227), Expect = 1.280e-21
Identity = 45/81 (55.56%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 LAQWRTSEEFDARERAALGIAEAVTAGKVDDATWAEGVAQFSNEEMVELVLVAGFYSMVGRVLDALRVELDDDIRDYAPRL 243
            LA+WR+S+EFDARE+AAL +AEAVTAG+V +  +A     F + + VEL LVA FY+ VGR++DAL V+L+  +RD++PRL
Sbjct:   96 LARWRSSKEFDAREKAALALAEAVTAGRVGERVYAGASKHFDHADYVELCLVAAFYAAVGRMIDALGVQLEPAMRDHSPRL 176          
BLAST of mRNA_P-wetherbeei_contig53417.1.1 vs. uniprot
Match: A0A177QU73_9PROT (CMD domain-containing protein (Fragment) n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QU73_9PROT)

HSP 1 Score: 91.3 bits (225), Expect = 2.330e-21
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 LAQWRTSEEFDARERAALGIAEAVTAGKVDDATWAEGVAQFSNEEMVELVLVAGFYSMVGRVLDALRVELDDDIRDYAPRLP 246
            L+ WR SE F ARE+AAL +AEAVT GKV D  +A  +  F + + VEL + A FY+MVGR+LDA+ V+L+ D+ +Y+P+LP
Sbjct:   94 LSSWRKSELFSAREKAALALAEAVTQGKVSDEVYALAMQHFDHHDYVELSITAAFYAMVGRMLDAMGVQLEPDVENYSPKLP 175          
BLAST of mRNA_P-wetherbeei_contig53417.1.1 vs. uniprot
Match: A0A1F4BJS6_9PROT (CMD domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_19 TaxID=1797491 RepID=A0A1F4BJS6_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 6.900e-21
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 LAQWRTSEEFDARERAALGIAEAVTAGKVDDATWAEGVAQFSNEEMVELVLVAGFYSMVGRVLDALRVELDDDIRDYAPRLP 246
            LA W+ SE+FDARERAAL + EAVTA ++ DA  AE     S+ + VEL L A  Y+MV R+LDAL VELD   RDYAP+LP
Sbjct:   96 LANWQASEQFDARERAALALTEAVTACRMTDAVHAEAKRHCSDADYVELCLTAAAYAMVSRMLDALGVELDAHERDYAPKLP 177          
BLAST of mRNA_P-wetherbeei_contig53417.1.1 vs. uniprot
Match: A0A1F4ESB2_9PROT (CMD domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4ESB2_9PROT)

HSP 1 Score: 87.8 bits (216), Expect = 5.900e-20
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 LAQWRTSEEFDARERAALGIAEAVTAGKVDDATWAEGVAQFSNEEMVELVLVAGFYSMVGRVLDALRVELDDDIRDYAPRL 243
            LA WR S EFDA+E+AAL IA+AVT G+V D  + +    F + + VEL + AGFY+MV R LDAL V+L+ D  DY+P+L
Sbjct:   99 LADWRKSAEFDAKEKAALAIADAVTEGRVSDDVYRDVSKHFDHHDYVELAVTAGFYAMVARTLDALGVQLEPDFVDYSPKL 179          
BLAST of mRNA_P-wetherbeei_contig53417.1.1 vs. uniprot
Match: UPI001FD8F897 (carboxymuconolactone decarboxylase family protein n=1 Tax=Pseudonocardia parietis TaxID=570936 RepID=UPI001FD8F897)

HSP 1 Score: 77.4 bits (189), Expect = 2.640e-16
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 LAQWRTSEEFDARERAALGIAEAVTAGKVDDATWAEGVAQFSNEEMVELVLVAGFYSMVGRVLDALRVELDDDIRDYAP 237
            +A W+TS+ +  RER AL + +AV AG V+D    E    FS++E VELVL AGFY+MV RVLDALRV ++DD  +  P
Sbjct:   60 IAAWQTSDCYSERERVALMLTDAVLAGHVNDGVQYELARYFSDQERVELVLTAGFYTMVPRVLDALRVPIEDDPPEPGP 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53417.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S8B0A3_9PROT2.270e-2765.85CMD domain-containing protein n=1 Tax=Betaproteoba... [more]
UPI001998A6A58.830e-2460.98Carboxymuconolactone decarboxylase family protein ... [more]
A0A521Z4D7_9PROT5.390e-2356.10Carboxymuconolactone decarboxylase family protein ... [more]
A0A537A4Z3_9PROT1.220e-2256.10Carboxymuconolactone decarboxylase family protein ... [more]
A0A536Y4M8_9PROT4.320e-2256.79Carboxymuconolactone decarboxylase family protein ... [more]
A0A537DAD2_9PROT1.280e-2155.56Carboxymuconolactone decarboxylase family protein ... [more]
A0A177QU73_9PROT2.330e-2152.44CMD domain-containing protein (Fragment) n=1 Tax=B... [more]
A0A1F4BJS6_9PROT6.900e-2158.54CMD domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A1F4ESB2_9PROT5.900e-2053.09CMD domain-containing protein n=1 Tax=Betaproteoba... [more]
UPI001FD8F8972.640e-1651.90carboxymuconolactone decarboxylase family protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53417contigP-wetherbeei_contig53417:289..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1034943.BN1094_00822
PFAMsCMD
Model size249
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.45e-14
EggNOG OGsCOG2128@1|root,COG2128@2|Bacteria,1MVWP@1224|Proteobacteria,1SE5X@1236|Gammaproteobacteria
DescriptionCarboxymuconolactone decarboxylase family
Cds size249
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.069511-CDS-P-wetherbeei_contig53417:288..5371683186799.069511-CDS-P-wetherbeei_contig53417:288..537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53417 289..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53417.1.1prot_P-wetherbeei_contig53417.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53417 289..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53417.1.1

>prot_P-wetherbeei_contig53417.1.1 ID=prot_P-wetherbeei_contig53417.1.1|Name=mRNA_P-wetherbeei_contig53417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
LAQWRTSEEFDARERAALGIAEAVTAGKVDDATWAEGVAQFSNEEMVELV
LVAGFYSMVGRVLDALRVELDDDIRDYAPRLP*
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mRNA from alignment at P-wetherbeei_contig53417:289..537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53417.1.1 ID=mRNA_P-wetherbeei_contig53417.1.1|Name=mRNA_P-wetherbeei_contig53417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig53417:289..537- (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCCAATGGCGCACGTCGGAGGAGTTCGACGCGCGCGAACGCGCGGC GCTCGGCATTGCGGAAGCCGTGACTGCCGGCAAGGTGGACGATGCGACCT GGGCCGAAGGCGTGGCGCAGTTTTCGAACGAGGAAATGGTCGAGCTCGTC CTCGTGGCGGGGTTCTACTCGATGGTGGGCAGGGTGCTCGACGCGTTGCG TGTCGAGCTCGACGACGACATCCGCGACTACGCGCCGCGGCTGCCTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53417:289..537-

>mRNA_P-wetherbeei_contig53417.1.1 ID=mRNA_P-wetherbeei_contig53417.1.1|Name=mRNA_P-wetherbeei_contig53417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig53417:289..537- (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCCAATGGCGCACGTCGGAGGAGTTCGACGCGCGCGAACGCGCGGC
GCTCGGCATTGCGGAAGCCGTGACTGCCGGCAAGGTGGACGATGCGACCT
GGGCCGAAGGCGTGGCGCAGTTTTCGAACGAGGAAATGGTCGAGCTCGTC
CTCGTGGCGGGGTTCTACTCGATGGTGGGCAGGGTGCTCGACGCGTTGCG
TGTCGAGCTCGACGACGACATCCGCGACTACGCGCCGCGGCTGCCTTAA
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