mRNA_P-wetherbeei_contig53403.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53403.1.1
Unique NamemRNA_P-wetherbeei_contig53403.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53403.1.1 vs. uniprot
Match: A0A8F9IHT1_ECOLX (Colicin n=2 Tax=Escherichia coli TaxID=562 RepID=A0A8F9IHT1_ECOLX)

HSP 1 Score: 47.4 bits (111), Expect = 3.060e-5
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:   10 DDYELWNNVHTATLLDYNLQELDADRNRNLFHPDA 114
            D YELWNNVHTATL D+ +++ D      LFHPDA
Sbjct:  109 DGYELWNNVHTATLEDFKIKDTD------LFHPDA 137
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53403.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8F9IHT1_ECOLX3.060e-560.00Colicin n=2 Tax=Escherichia coli TaxID=562 RepID=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53403contigP-wetherbeei_contig53403:395..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog199310.c4755
PFAMsT6SS_HCP
Model size144
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K06887
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.21e-05
EggNOG OGsCOG3157@1|root,COG4104@1|root,COG3157@2|Bacteria,COG4104@2|Bacteria,1QUAE@1224|Proteobacteria,1RZRA@1236|Gammaproteobacteria
DescriptionCOG3209 Rhs family protein
Cds size144
COG categoryM
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.9497051-CDS-P-wetherbeei_contig53403:394..5381683186798.9497051-CDS-P-wetherbeei_contig53403:394..538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53403 395..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53403.1.1prot_P-wetherbeei_contig53403.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53403 395..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53403.1.1

>prot_P-wetherbeei_contig53403.1.1 ID=prot_P-wetherbeei_contig53403.1.1|Name=mRNA_P-wetherbeei_contig53403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
GAGDDYELWNNVHTATLLDYNLQELDADRNRNLFHPDAWPLFRGEID*
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mRNA from alignment at P-wetherbeei_contig53403:395..538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53403.1.1 ID=mRNA_P-wetherbeei_contig53403.1.1|Name=mRNA_P-wetherbeei_contig53403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig53403:395..538- (Phaeothamnion wetherbeei SAG_119_79)
GGGGCCGGCGATGACTATGAACTTTGGAACAACGTTCATACCGCGACCTT
GTTGGACTACAATCTTCAGGAGCTTGATGCCGATCGAAACCGGAATCTCT
TCCATCCTGACGCATGGCCCCTTTTTCGAGGCGAGATCGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53403:395..538-

>mRNA_P-wetherbeei_contig53403.1.1 ID=mRNA_P-wetherbeei_contig53403.1.1|Name=mRNA_P-wetherbeei_contig53403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig53403:395..538- (Phaeothamnion wetherbeei SAG_119_79)
GGGGCCGGCGATGACTATGAACTTTGGAACAACGTTCATACCGCGACCTT
GTTGGACTACAATCTTCAGGAGCTTGATGCCGATCGAAACCGGAATCTCT
TCCATCCTGACGCATGGCCCCTTTTTCGAGGCGAGATCGACTGA
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