mRNA_P-wetherbeei_contig5340.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5340.1.1
Unique NamemRNA_P-wetherbeei_contig5340.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5340.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5340contigP-wetherbeei_contig5340:2334..3900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1567
Hectar predicted targeting categoryother localisation
Exons1
Cds size1551
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.8917327-UTR-P-wetherbeei_contig5340:2333..23491683186798.8917327-UTR-P-wetherbeei_contig5340:2333..2349Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5340 2334..2349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.9005642-CDS-P-wetherbeei_contig5340:2349..39001683186798.9005642-CDS-P-wetherbeei_contig5340:2349..3900Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5340 2350..3900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5340.1.1prot_P-wetherbeei_contig5340.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5340 2350..3900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5340.1.1

>prot_P-wetherbeei_contig5340.1.1 ID=prot_P-wetherbeei_contig5340.1.1|Name=mRNA_P-wetherbeei_contig5340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=517bp
MAGMIGLGGGSARPAEGFTAVASATAAASVAAAAMTAATVAPEMAAAAAP
KATPRLRPGDAAQGAASGGVSPVAAGVAGVPPPAEEAAERTHRQFFSQPT
ALEAAAAEAPSVEALLAAAGVETNRWAGGRGGGVGAGGGRGGIEAPAAAA
APSRRQSRPAAVAGTPAAGVTTAAAAAPASSRESEQGRPTHFRQNRAAES
AQRAATGVSPVCISPSFATSDVSVSAAAGASVAVGVVVMWSGTACGVCST
VPLDEEIMAGWQLPGSGAGGSGGRHGGGMARSERMIRCPTCGEAMEPELR
IVIKGRRRDRGGGAVGPGNGHRQQPSVAAADGAGATTRTATAGPGSRTSG
KGGGSSGGWSRDRCGIGGSGGAASGNEAARGGGENGGGGGGPSGADLSHV
MDANQLSIGRRSADGTQRSVRIGSVRLFTESLMSLHESTAAAAAAVAAGR
TAAPARPREPETAGSATAPAKSVGFSSALLGVPSSAAVGGEREREKEGKR
VGWGPSRRSSKTDGGGG
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mRNA from alignment at P-wetherbeei_contig5340:2334..3900+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5340.1.1 ID=mRNA_P-wetherbeei_contig5340.1.1|Name=mRNA_P-wetherbeei_contig5340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1567bp|location=Sequence derived from alignment at P-wetherbeei_contig5340:2334..3900+ (Phaeothamnion wetherbeei SAG_119_79)
ATCATCAAGGTCGGTGATGGCCGGCATGATCGGGCTCGGCGGCGGGAGCG
CGCGGCCGGCGGAAGGATTCACGGCGGTGGCGAGTGCGACGGCAGCTGCG
TCGGTGGCAGCGGCGGCAATGACGGCAGCGACGGTGGCTCCTGAGATGGC
GGCGGCAGCGGCACCAAAGGCGACGCCGAGATTGCGGCCTGGCGATGCGG
CCCAGGGAGCAGCGAGTGGAGGCGTCAGTCCAGTGGCTGCCGGCGTGGCA
GGAGTTCCGCCGCCTGCGGAGGAGGCGGCGGAACGAACGCACCGCCAGTT
TTTCTCTCAGCCCACCGCGTTGGAGGCGGCTGCGGCCGAGGCGCCCTCCG
TGGAGGCTCTCTTGGCGGCCGCGGGCGTCGAAACGAACAGATGGGCCGGC
GGGCGCGGCGGCGGCGTTGGGGCTGGGGGTGGCAGAGGCGGTATTGAGGC
GCCAGCAGCAGCGGCGGCGCCAAGCAGGCGCCAAAGCCGTCCCGCTGCGG
TCGCAGGAACGCCGGCCGCGGGGGTGACGACGGCCGCGGCGGCGGCGCCA
GCATCGTCGCGCGAGTCGGAGCAGGGAAGACCGACGCACTTTCGGCAGAA
CCGCGCCGCAGAATCTGCTCAACGCGCTGCCACGGGCGTCTCACCTGTCT
GCATCTCGCCGTCGTTCGCAACCTCCGACGTTTCCGTCAGCGCCGCCGCT
GGCGCCAGTGTGGCGGTCGGCGTTGTAGTCATGTGGAGCGGCACCGCCTG
CGGCGTATGCAGCACCGTCCCGCTGGACGAAGAAATTATGGCCGGCTGGC
AGCTGCCTGGCAGCGGCGCCGGGGGCAGCGGCGGGCGGCATGGCGGCGGG
ATGGCGCGCTCCGAGCGCATGATTCGGTGTCCGACCTGCGGCGAGGCCAT
GGAGCCGGAGCTCCGGATTGTAATCAAAGGGAGACGGCGCGACCGCGGCG
GCGGCGCCGTTGGGCCCGGCAACGGCCACCGGCAGCAGCCCTCCGTCGCC
GCCGCCGACGGGGCAGGCGCGACGACCCGCACTGCCACCGCTGGGCCTGG
AAGTCGAACAAGCGGCAAGGGCGGCGGCAGCAGCGGTGGATGGAGCCGGG
ATCGCTGCGGCATCGGGGGGAGCGGCGGCGCGGCCTCCGGAAACGAGGCT
GCGCGAGGTGGTGGTGAGAACGGTGGCGGCGGCGGCGGCCCCAGTGGAGC
GGATTTGAGTCACGTGATGGATGCCAATCAGCTGTCCATAGGCCGTCGGT
CGGCGGATGGCACCCAGCGGTCGGTCCGGATTGGATCTGTACGGCTGTTC
ACCGAAAGCCTCATGAGCCTGCACGAGTCTACGGCGGCTGCCGCGGCGGC
CGTGGCGGCGGGAAGGACGGCGGCACCGGCGCGGCCACGCGAACCCGAAA
CCGCTGGCTCTGCTACCGCCCCTGCGAAGTCGGTGGGATTCTCGTCGGCT
TTGCTGGGCGTGCCATCGTCGGCGGCGGTTGGCGGGGAGCGCGAAAGGGA
AAAGGAGGGGAAGCGCGTGGGGTGGGGACCGTCGCGAAGGTCCAGCAAGA
CTGACGGCGGCGGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5340:2334..3900+

>mRNA_P-wetherbeei_contig5340.1.1 ID=mRNA_P-wetherbeei_contig5340.1.1|Name=mRNA_P-wetherbeei_contig5340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1551bp|location=Sequence derived from alignment at P-wetherbeei_contig5340:2334..3900+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGCATGATCGGGCTCGGCGGCGGGAGCGCGCGGCCGGCGGAAGG
ATTCACGGCGGTGGCGAGTGCGACGGCAGCTGCGTCGGTGGCAGCGGCGG
CAATGACGGCAGCGACGGTGGCTCCTGAGATGGCGGCGGCAGCGGCACCA
AAGGCGACGCCGAGATTGCGGCCTGGCGATGCGGCCCAGGGAGCAGCGAG
TGGAGGCGTCAGTCCAGTGGCTGCCGGCGTGGCAGGAGTTCCGCCGCCTG
CGGAGGAGGCGGCGGAACGAACGCACCGCCAGTTTTTCTCTCAGCCCACC
GCGTTGGAGGCGGCTGCGGCCGAGGCGCCCTCCGTGGAGGCTCTCTTGGC
GGCCGCGGGCGTCGAAACGAACAGATGGGCCGGCGGGCGCGGCGGCGGCG
TTGGGGCTGGGGGTGGCAGAGGCGGTATTGAGGCGCCAGCAGCAGCGGCG
GCGCCAAGCAGGCGCCAAAGCCGTCCCGCTGCGGTCGCAGGAACGCCGGC
CGCGGGGGTGACGACGGCCGCGGCGGCGGCGCCAGCATCGTCGCGCGAGT
CGGAGCAGGGAAGACCGACGCACTTTCGGCAGAACCGCGCCGCAGAATCT
GCTCAACGCGCTGCCACGGGCGTCTCACCTGTCTGCATCTCGCCGTCGTT
CGCAACCTCCGACGTTTCCGTCAGCGCCGCCGCTGGCGCCAGTGTGGCGG
TCGGCGTTGTAGTCATGTGGAGCGGCACCGCCTGCGGCGTATGCAGCACC
GTCCCGCTGGACGAAGAAATTATGGCCGGCTGGCAGCTGCCTGGCAGCGG
CGCCGGGGGCAGCGGCGGGCGGCATGGCGGCGGGATGGCGCGCTCCGAGC
GCATGATTCGGTGTCCGACCTGCGGCGAGGCCATGGAGCCGGAGCTCCGG
ATTGTAATCAAAGGGAGACGGCGCGACCGCGGCGGCGGCGCCGTTGGGCC
CGGCAACGGCCACCGGCAGCAGCCCTCCGTCGCCGCCGCCGACGGGGCAG
GCGCGACGACCCGCACTGCCACCGCTGGGCCTGGAAGTCGAACAAGCGGC
AAGGGCGGCGGCAGCAGCGGTGGATGGAGCCGGGATCGCTGCGGCATCGG
GGGGAGCGGCGGCGCGGCCTCCGGAAACGAGGCTGCGCGAGGTGGTGGTG
AGAACGGTGGCGGCGGCGGCGGCCCCAGTGGAGCGGATTTGAGTCACGTG
ATGGATGCCAATCAGCTGTCCATAGGCCGTCGGTCGGCGGATGGCACCCA
GCGGTCGGTCCGGATTGGATCTGTACGGCTGTTCACCGAAAGCCTCATGA
GCCTGCACGAGTCTACGGCGGCTGCCGCGGCGGCCGTGGCGGCGGGAAGG
ACGGCGGCACCGGCGCGGCCACGCGAACCCGAAACCGCTGGCTCTGCTAC
CGCCCCTGCGAAGTCGGTGGGATTCTCGTCGGCTTTGCTGGGCGTGCCAT
CGTCGGCGGCGGTTGGCGGGGAGCGCGAAAGGGAAAAGGAGGGGAAGCGC
GTGGGGTGGGGACCGTCGCGAAGGTCCAGCAAGACTGACGGCGGCGGCGG
G
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