mRNA_P-wetherbeei_contig12387.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12387.1.1
Unique NamemRNA_P-wetherbeei_contig12387.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12387.1.1 vs. uniprot
Match: UPI000B4A930E (DUF2793 domain-containing protein n=1 Tax=Rhodomicrobium TaxID=1068 RepID=UPI000B4A930E)

HSP 1 Score: 180 bits (456), Expect = 5.580e-54
Identity = 93/152 (61.18%), Postives = 109/152 (71.71%), Query Frame = 1
Query:   19 IGLPLLEASQSQKHVTHNEALLLLDTMVHLAVISRVLAAPPGSPADGDRYLVAASATGGWLGHSGHIAFREAGAWRFAIPKAGWRLWVAAESLFLLFDGTLWIDLRDFDELQNMALLGVNTTADSANKLSVASANVLFTHAGAGSRVKINKN 474
            + LP +EA+Q+QKHVTHN ALL LD +V L+V+ R LAAPPGSPADGDRYL+AASATG W G  G IA R+ GAW F  P+ GW LW+A E + L FDG  W         QN A LGVNTTAD+ NKLSVAS  VLF H G+G +VK+NKN
Sbjct:    7 LALPFIEAAQAQKHVTHNAALLALDAIVMLSVLDRDLAAPPGSPADGDRYLIAASATGAWSGKDGKIAARQDGAWSFHAPREGWLLWIADEDIVLAFDGAAWTGAAT----QNAARLGVNTTADATNKLSVASGAVLFNHIGSGVQVKLNKN 154          
BLAST of mRNA_P-wetherbeei_contig12387.1.1 vs. uniprot
Match: UPI001F2F8477 (DUF2793 domain-containing protein n=1 Tax=Fuscibacter oryzae TaxID=2803939 RepID=UPI001F2F8477)

HSP 1 Score: 168 bits (426), Expect = 9.450e-48
Identity = 82/156 (52.56%), Postives = 109/156 (69.87%), Query Frame = 1
Query:    7 DTPLIGLPLLEASQSQKHVTHNEALLLLDTMVHLAVISRVLAAPPGSPADGDRYLVAASATGGWLGHSGHIAFREAGAWRFAIPKAGWRLWVAAESLFLLFDGTLWIDLRDFDELQNMALLGVNTTADSANKLSVASANVLFTHAGAGSRVKINKN 474
            DTP++ LPL+  SQ+QKHVTHNEA++LLD +VHLAV SR L  PP SPA+ DRY+VA  ATG W G  G IA R+ GAWRF IP  G+R W+ AE+    + GT W+   +  +  ++  LGV+ T D+ N+L+V+S   L +HAGAG +VK+NKN
Sbjct:    4 DTPILALPLIMPSQAQKHVTHNEAVMLLDALVHLAVTSRTLGTPPASPAEADRYIVATGATGDWAGQVGRIALRQDGAWRFVIPNPGFRAWIVAENTAATWTGTAWVSQAE--QALSVTQLGVSATPDATNRLAVSSPATLLSHAGAGHQVKVNKN 157          
BLAST of mRNA_P-wetherbeei_contig12387.1.1 vs. uniprot
Match: A0A239MAS7_9RHOB (Uncharacterized protein (Fragment) n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239MAS7_9RHOB)

HSP 1 Score: 161 bits (407), Expect = 1.180e-47
Identity = 85/158 (53.80%), Postives = 110/158 (69.62%), Query Frame = 1
Query:    1 MSDTPL-IGLPLLEASQSQKHVTHNEALLLLDTMVHLAVISRVLAAPPGSPADGDRYLVAASATGGWLGHSGHIAFREAGAWRFAIPKAGWRLWVAAESLFLLFDGTLWIDLRDFDELQNMALLGVNTTADSANKLSVASANVLFTHAGAGSRVKINK 471
            M DT   + LP + A+Q+QKHVTHNEAL  LD +VHL+V+ R L APPGSPADGDRY+VA+ ATG W G   ++A    G W    P+ GWR WV  E L L++DG+ W D+    ELQN+ LLG+N TAD+ N+LSV++  +L +H GAG +VKINK
Sbjct:    1 MPDTTTNLMLPYILAAQAQKHVTHNEALRTLDGLVHLSVLDRDLTAPPGSPADGDRYIVASGATGDWSGWDLNVALWTDGTWLRLPPRNGWRAWVEDEGLLLVWDGSTWSDILP-SELQNLDLLGINATADTTNRLSVSATAILLSHDGAGHQVKINK 157          
BLAST of mRNA_P-wetherbeei_contig12387.1.1 vs. uniprot
Match: UPI0018C45D2A (DUF2793 domain-containing protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C45D2A)

HSP 1 Score: 159 bits (401), Expect = 7.540e-46
Identity = 81/158 (51.27%), Postives = 115/158 (72.78%), Query Frame = 1
Query:    1 MSDTPLIGLPLLEASQSQKHVTHNEALLLLDTMVHLAVISRVLAAPPGSPADGDRYLVAASATGGWLGHSGHIAFREAGAWRFAIPKAGWRLWVAAESLFLLFDGTLWIDLRDFDELQNMALLGVNTTADSANKLSVASANVLFTHAGAGSRVKINKN 474
            MS++P + LPL+EA+Q+QKH+ HN+A+ L+D ++ L ++SR L APPGS A+GDR+L+  + TG W G +G IA R+AG W F  P+AG+  W+ AES F++FDGT W+ L  F   Q++ALLGVN T D+ NKLSV S+ VL  + G G ++K+NKN
Sbjct:    1 MSNSPNLNLPLIEANQAQKHLPHNDAVALIDGLLQLRLVSRGLNAPPGSFAEGDRFLIGTTPTGDWAGKAGLIALRDAGLWVFLTPRAGFLAWIVAESTFIVFDGTAWLPLP-FP--QSVALLGVNATPDATNKLSVNSSAVLLNNVGNGMQLKLNKN 155          
BLAST of mRNA_P-wetherbeei_contig12387.1.1 vs. uniprot
Match: A0A7C4XP49_9HYPH (DUF2793 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XP49_9HYPH)

HSP 1 Score: 163 bits (412), Expect = 3.790e-45
Identity = 86/160 (53.75%), Postives = 107/160 (66.88%), Query Frame = 1
Query:    1 MSDTPLIGLPLLEASQSQKHVTHNEALLLLDTMVHLAVISRVLAAPPGSPADGDRYLVAASATGGWLGHSGHIAFREAGAWRFAIPKAGWRLWVAAESLFLLFDGTLWIDLRD-FDELQNMA--LLGVNTTADSANKLSVASANVLFTHAGAGSRVKINK 471
            M +TP +GLP + A+Q+QKHVTHNEAL  LD +V L V+ R LA PPGSPADG RY+V    TG W G   +IA  + GAWRF  P  GW +WVA E + L FDGT W+      D L  +   LLG+N TAD++N+LS+ SA  LF HAGAG ++KINK
Sbjct:    1 MDETPNLGLPYIMAAQAQKHVTHNEALRTLDALVQLTVLDRDLATPPGSPADGARYIVGPGPTGDWTGQVDNIAAWQDGAWRFYAPGQGWLVWVADEDVLLAFDGTAWVTAGGGIDSLNPVTGGLLGINATADTSNRLSINSAASLFNHAGAGHQMKINK 160          
BLAST of mRNA_P-wetherbeei_contig12387.1.1 vs. uniprot
Match: A0A7C5LX07_9RHOB (DUF2793 domain-containing protein n=1 Tax=Aliiroseovarius sp. TaxID=1872442 RepID=A0A7C5LX07_9RHOB)

HSP 1 Score: 162 bits (411), Expect = 2.150e-44
Identity = 81/158 (51.27%), Postives = 106/158 (67.09%), Query Frame = 1
Query:    1 MSDTPLIGLPLLEASQSQKHVTHNEALLLLDTMVHLAVISRVLAAPPGSPADGDRYLVAASATGGWLGHSGHIAFREAGAWRFAIPKAGWRLWVAAESLFLLFDGTLWIDLRDFDELQNMALLGVNTTADSANKLSVASANVLFTHAGAGSRVKINKN 474
            MSDTP + LPL+E++Q+QKHVTHNEAL  LDT+V LAV+S+    PPG+P DG+ ++V   ATG W G +G +A  +  AW F  PK GW  WVA       FDGT W+      + QN+ +LG+NTTAD+ N+LSVAS   L  + GAG ++KINKN
Sbjct:    1 MSDTPNLALPLIESAQAQKHVTHNEALRTLDTLVQLAVVSKDQTTPPGAPVDGESHIVPTGATGAWAGQAGKLAVWQDTAWIFHAPKEGWTAWVADIDRQWSFDGTAWVQTTPPPDFQNIPMLGINTTADATNRLSVASPATLLNNEGAGHQLKINKN 158          
BLAST of mRNA_P-wetherbeei_contig12387.1.1 vs. uniprot
Match: UPI0019CEC2A9 (DUF2793 domain-containing protein n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI0019CEC2A9)

HSP 1 Score: 158 bits (399), Expect = 2.650e-44
Identity = 78/146 (53.42%), Postives = 103/146 (70.55%), Query Frame = 1
Query:    1 MSDTPLIGLPLLEASQSQKHVTHNEALLLLDTMVHLAVISRVLAAPPGSPADGDRYLVAASATGGWLGHSGHIAFREAGAWRFAIPKAGWRLWVAAESLFLLFDGTLWIDLRDFDELQNMALLGVNTTADSANKLSVASANVLFTH 438
            M+DT  +GLP +E  Q+QKHVTHNEAL +LD  + +AV+ R   APP  PA+G R++V ASATGGW G    IA  + GAW F +PK GW +W  A+++ L+FDG+LW DLR+   L N A LGVNT+AD++N+LSV S  VL +H
Sbjct:    1 MTDTANLGLPFIEGGQAQKHVTHNEALRILDAAIQIAVLDRTRTAPPPGPAEGQRHVVGASATGGWAGQGNAIATWQDGAWAFLLPKPGWCIWSVADAIMLVFDGSLWRDLRNL-ALDNAAHLGVNTSADASNRLSVKSDAVLLSH 145          
BLAST of mRNA_P-wetherbeei_contig12387.1.1 vs. uniprot
Match: A0A239JY75_9RHOB (Uncharacterized protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A239JY75_9RHOB)

HSP 1 Score: 160 bits (405), Expect = 3.030e-44
Identity = 84/158 (53.16%), Postives = 112/158 (70.89%), Query Frame = 1
Query:    1 MSDTPL-IGLPLLEASQSQKHVTHNEALLLLDTMVHLAVISRVLAAPPGSPADGDRYLVAASATGGWLGHSGHIAFREAGAWRFAIPKAGWRLWVAAESLFLLFDGTLWIDLRDFDELQNMALLGVNTTADSANKLSVASANVLFTHAGAGSRVKINK 471
            MSDT   + LP + A+Q+QKHVTHNEAL +LD +V L+V+ R L APPGSPADGDRY+VA+ ATG W G   ++A    G W    P++GWR WV  E L L++DG+ W D+    ELQN+ L+G+N TAD+ N+LSV++  +L +H GAG +VKINK
Sbjct:    1 MSDTTTNLLLPYILAAQAQKHVTHNEALRILDGLVQLSVLDRDLTAPPGSPADGDRYIVASGATGDWSGWDLNVALWTDGTWLRLPPRSGWRAWVEDEGLLLVWDGSTWSDILP-SELQNLDLIGINATADTINRLSVSAPAILLSHDGAGHQVKINK 157          
BLAST of mRNA_P-wetherbeei_contig12387.1.1 vs. uniprot
Match: A0A2G6ID80_9RHOB (Uncharacterized protein n=1 Tax=Rhodobacterales bacterium TaxID=1948890 RepID=A0A2G6ID80_9RHOB)

HSP 1 Score: 162 bits (409), Expect = 4.170e-44
Identity = 86/158 (54.43%), Postives = 106/158 (67.09%), Query Frame = 1
Query:    1 MSDTPL-IGLPLLEASQSQKHVTHNEALLLLDTMVHLAVISRVLAAPPGSPADGDRYLVAASATGGWLGHSGHIAFREAGAWRFAIPKAGWRLWVAAESLFLLFDGTLWIDLRDFDELQNMALLGVNTTADSANKLSVASANVLFTHAGAGSRVKINK 471
            MSDT + + LP L+ASQ+QKHVTHNEAL LLD++V L+VIS     PP +P DGDRYL+ A  TG W GH GH+A  +  AW F  P  GW  WV+        DG  W  +    ++QN+ L+GVNTTADS N+LSVA+AN L TH GAG R+KINK
Sbjct:    1 MSDTSVHLSLPYLQASQAQKHVTHNEALRLLDSIVQLSVISADQTTPPAAPQDGDRYLLPAGVTGVWAGHEGHVAIWDDSAWSFLSPAEGWLAWVSDTDQLRAHDGNAWGAVSG--DMQNLDLVGVNTTADSNNRLSVAAANTLLTHEGAGHRLKINK 156          
BLAST of mRNA_P-wetherbeei_contig12387.1.1 vs. uniprot
Match: A0A1M3NRC0_9HYPH (Uncharacterized protein n=1 Tax=Rhizobiales bacterium 65-9 TaxID=1895816 RepID=A0A1M3NRC0_9HYPH)

HSP 1 Score: 159 bits (403), Expect = 6.510e-44
Identity = 81/157 (51.59%), Postives = 110/157 (70.06%), Query Frame = 1
Query:    1 MSDTPLIGLPLLEASQSQKHVTHNEALLLLDTMVHLAVISRVLAAPPGSPADGDRYLVAASATGGWLGHSGHIAFREAGAWRFAIPKAGWRLWVAAESLFLLFDGTLWIDLRDFDELQNMALLGVNTTADSANKLSVASANVLFTHAGAGSRVKINK 471
            MS T  + LPL+  +Q+QKHVTHNEA+ LLD + HL+V+ R L+APP SPADGDRY+VAA+ +G W G +G +A+ +  AWR   P+ GW  W+A ESL L + G  W  L   + +   +L+GVN TAD+ N+L+V+SA  LF HAGAG ++KINK
Sbjct:    1 MSATTHLALPLIAPAQAQKHVTHNEAIGLLDALTHLSVLDRDLSAPPSSPADGDRYIVAAAPSGAWTGAAGAVAWFDVNAWRILQPQTGWIAWIADESLALCWSGLDWTPLASVNPV---SLMGVNATADATNRLAVSSAGSLFNHAGAGHQLKINK 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12387.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000B4A930E5.580e-5461.18DUF2793 domain-containing protein n=1 Tax=Rhodomic... [more]
UPI001F2F84779.450e-4852.56DUF2793 domain-containing protein n=1 Tax=Fuscibac... [more]
A0A239MAS7_9RHOB1.180e-4753.80Uncharacterized protein (Fragment) n=1 Tax=Antarct... [more]
UPI0018C45D2A7.540e-4651.27DUF2793 domain-containing protein n=1 Tax=Aestuari... [more]
A0A7C4XP49_9HYPH3.790e-4553.75DUF2793 domain-containing protein n=1 Tax=Hyphomic... [more]
A0A7C5LX07_9RHOB2.150e-4451.27DUF2793 domain-containing protein n=1 Tax=Aliirose... [more]
UPI0019CEC2A92.650e-4453.42DUF2793 domain-containing protein n=1 Tax=Tardipha... [more]
A0A239JY75_9RHOB3.030e-4453.16Uncharacterized protein n=2 Tax=Rhodobacterales Ta... [more]
A0A2G6ID80_9RHOB4.170e-4454.43Uncharacterized protein n=1 Tax=Rhodobacterales ba... [more]
A0A1M3NRC0_9HYPH6.510e-4451.59Uncharacterized protein n=1 Tax=Rhizobiales bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12387contigP-wetherbeei_contig12387:1525..1998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1267005.KB911255_gene2476
PFAMsDUF2793
Model size474
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.34e-44
EggNOG OGs28JTG@1|root,2Z7PY@2|Bacteria,1QVNY@1224|Proteobacteria,2U7ED@28211|Alphaproteobacteria,3N6VP@45401|Hyphomicrobiaceae
DescriptionProtein of unknown function (DUF2793)
Cds size474
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.4119363-CDS-P-wetherbeei_contig12387:1524..19981683185947.4119363-CDS-P-wetherbeei_contig12387:1524..1998Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12387 1525..1998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12387.1.1prot_P-wetherbeei_contig12387.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12387 1525..1998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12387.1.1

>prot_P-wetherbeei_contig12387.1.1 ID=prot_P-wetherbeei_contig12387.1.1|Name=mRNA_P-wetherbeei_contig12387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
MSDTPLIGLPLLEASQSQKHVTHNEALLLLDTMVHLAVISRVLAAPPGSP
ADGDRYLVAASATGGWLGHSGHIAFREAGAWRFAIPKAGWRLWVAAESLF
LLFDGTLWIDLRDFDELQNMALLGVNTTADSANKLSVASANVLFTHAGAG
SRVKINKN
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mRNA from alignment at P-wetherbeei_contig12387:1525..1998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12387.1.1 ID=mRNA_P-wetherbeei_contig12387.1.1|Name=mRNA_P-wetherbeei_contig12387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig12387:1525..1998+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGACACTCCATTGATCGGCCTGCCGTTGCTTGAAGCATCCCAGTC GCAGAAACACGTGACGCATAATGAGGCGCTTTTGCTGCTTGATACCATGG TGCATCTGGCGGTGATTTCGCGGGTGCTTGCCGCGCCTCCCGGCTCTCCT GCTGACGGCGACCGTTATCTGGTGGCAGCTTCTGCCACCGGCGGCTGGCT GGGCCATTCCGGCCACATCGCCTTTCGTGAGGCAGGGGCCTGGCGCTTTG CCATTCCGAAAGCAGGCTGGCGGCTGTGGGTTGCGGCAGAATCCCTATTC CTGCTTTTCGATGGAACACTCTGGATCGATCTCCGGGATTTCGACGAATT GCAGAACATGGCTCTGCTTGGCGTCAACACCACCGCCGATTCGGCAAACA AACTGTCCGTGGCTTCGGCGAATGTGTTGTTCACCCATGCAGGCGCAGGA AGCCGCGTCAAGATCAACAAGAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12387:1525..1998+

>mRNA_P-wetherbeei_contig12387.1.1 ID=mRNA_P-wetherbeei_contig12387.1.1|Name=mRNA_P-wetherbeei_contig12387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig12387:1525..1998+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGACACTCCATTGATCGGCCTGCCGTTGCTTGAAGCATCCCAGTC
GCAGAAACACGTGACGCATAATGAGGCGCTTTTGCTGCTTGATACCATGG
TGCATCTGGCGGTGATTTCGCGGGTGCTTGCCGCGCCTCCCGGCTCTCCT
GCTGACGGCGACCGTTATCTGGTGGCAGCTTCTGCCACCGGCGGCTGGCT
GGGCCATTCCGGCCACATCGCCTTTCGTGAGGCAGGGGCCTGGCGCTTTG
CCATTCCGAAAGCAGGCTGGCGGCTGTGGGTTGCGGCAGAATCCCTATTC
CTGCTTTTCGATGGAACACTCTGGATCGATCTCCGGGATTTCGACGAATT
GCAGAACATGGCTCTGCTTGGCGTCAACACCACCGCCGATTCGGCAAACA
AACTGTCCGTGGCTTCGGCGAATGTGTTGTTCACCCATGCAGGCGCAGGA
AGCCGCGTCAAGATCAACAAGAAT
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